BAC Information

Click to search

BAC

Clone NameB6Ng01-219N02
Chromosome16 (Build37)
Map Location 33,221,657 - 33,379,933
singlet/doubletdoublet
Overlap geneOsbpl11, Snx4
Upstream geneFbxo45, Wdr53, 2310010M20Rik, Rnf168, LOC666966, Ubxd7, Tm4sf19, 0610012D17Rik, Pcyt1a, Osta, Zdhhc19, LOC385820, Tfrc, Tnk2, ENSMUSG00000075265, LOC672302, Muc4, Muc20, 1700021K19Rik, Fyttd1, Lrch3, EG625660, Iqcg, Rpl35a, Lmln, LOC638791
Downstream geneZfp148, Slc12a8, 4632417D23Rik, Heg1, Muc13, Itgb5, Umps, Kalrn, LOC100043670
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219N02.bB6Ng01-219N02.g
ACCGA035544GA035545
length1,053885
definitionB6Ng01-219N02.b B6Ng01-219N02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,378,883 - 33,379,933)(33,221,657 - 33,222,532)
sequence
gaattctctccttgtccacacccacctccccaccccttgaatgttcattt
gaataggctttttggccaaactccaaactcccgcattatgcacttgtgat
gacactgaattagattactgtctgcaaggttaatattccctcaggcgtta
accttagtaaaccgcgacgccttttgaagtagctgaggctcagaagttca
gctgaattcaaacacagttaactaagaaaagcagggatgagcccacagcc
tcacaataaactctacttgaaccttctccactaaaaaaatataaatttta
ataagatgacagtgcatattctgaatgctaattgtaacaaaaccgtgata
caagctagagcaagggacagttagctggaggacagccttctggcaacttc
tagcaactgcagtgacatcaaattcagatgtatttttaaaaagggaagag
aagaaaaaaaaaaccctctggcagccaagaagctaacttttaggtttaag
ctgtggtaaagctaataactagaaagagctaaaagcctagggtcacaccc
agtggactaagatgaatagggttgccactaggaatacatctctttgtttc
tgaagagaattaagacaaggaagaaacaaccatctaaaatgggcagagtg
gagaagactactgaccatgccttcaaagtaagagtgattgaaggctcttg
aaattcttgctggtccattttttttatccagactgctgctgcttaccttc
caataccagtcttggccacgcagcttgcttcctttccatcttaaatttct
tccactcacccactttaaaacaatgagagacagccataaaggtagtgacg
ttaatcccagcactcaggaggcagaggcaggggtatcacttgagttagag
tccagtcttggtctacagagccagttccaggacagccaggcttcaccaga
gaaacccctgtctgagattgctcagcatttcaagcacttgctgctctttc
agagggcccaagtttccagagcacttgccctcacatggcagataatttgc
aca
gaattccctaaaagaagaaaataggggctagagagatggctcagtggtta
agagcactggctgctcttccagaggtcctgagttcaattcccagcaacca
catggtggctcacaaccatctgtaaggggatctggtgccctcttctggtt
tgtttgaagacagtgacagtgtactcacatacatactcactttttttttt
aaaaaaaaattacaacaacaacaacaaaacacgaggagaaagataaagca
aagtgatgcttagaaccctggccagacagcacggcttgctacatgagcct
cttgccctgagtttggtactttgaacctagggaagaagagaactgaatcc
agaaagctgtcttctgacctgcacctgtgagggcgcatacatgtgcgaca
cacacaagtaataattaaagaatagtggctagaagcccactctcttataa
cttgattgttgttttacggattggactttaaggttctttaggagagtgtg
tatgcacaggtgctcgccccccccccccccccccgtgtgtgtgtgtgtgt
gtgtatgctttggttttagtctagctacacagaacaaaaacagatgagta
tcttgtttgatagaatttttactttgtggtagggcaaataaaaatgtcac
caacaaaatcctcatagcttgagtttggagagatgggctcagttggttaa
agagcactggctactcttttcagaggtcctgagtttcaattcccagcaaa
ccacttggtggctcaaaaaccatctgtaatggatctgatgccctctttct
gatgtgtctgaagattaaaacagtgtatttcgtatacataaaatcttttt
ttaaaaatcctagcttttcaagcatgatggcctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_33378883_33379933
seq2: B6Ng01-219N02.b_48_1100 (reverse)

seq1  TGTGCATATTATCTGCCATGTGTGTGCAGGTGCTCTGGAAACTTGGGCCC  50
      |||||| ||||||||||||||| | ||| |||||||||||||||||||||
seq2  TGTGCAAATTATCTGCCATGTGAGGGCAAGTGCTCTGGAAACTTGGGCCC  50

seq1  TCTGAAAGAGCAGCAAGTGCTTTGAAATGCTGAGCCATCTCAGACA-GGG  99
      |||||||||||||||||||| |||||||||||||| |||||||||| |||
seq2  TCTGAAAGAGCAGCAAGTGC-TTGAAATGCTGAGCAATCTCAGACAGGGG  99

seq1  TTTCTCT-GTGAAGCCCTGGCTGTCCTGGAACTTGCTCTGTAGACC-AGG  147
      ||||||| |||||| |||||||||||||||||| |||||||||||| || 
seq2  TTTCTCTGGTGAAG-CCTGGCTGTCCTGGAACTGGCTCTGTAGACCAAGA  148

seq1  CTGGACTCTAACTCAAGTGATACCCCTGCCTCTGCCTCCTGAGTGCTGGG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTCTAACTCAAGTGATACCCCTGCCTCTGCCTCCTGAGTGCTGGG  198

seq1  ATTAACGTCACTACC-TTATGGCTGTCTCTCATTGTTTTAAAGTGGGTGA  246
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATTAACGTCACTACCTTTATGGCTGTCTCTCATTGTTTTAAAGTGGGTGA  248

seq1  GTGGAAGAAATTTAAGATGGAAAGGAAGCAAGCTGCGTGGCCAAGACTGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAGAAATTTAAGATGGAAAGGAAGCAAGCTGCGTGGCCAAGACTGG  298

seq1  TATTGGAAGGTAAGCAGCAGCAGTCTGGATAAAAAAAATGGACCAGCAAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGAAGGTAAGCAGCAGCAGTCTGGATAAAAAAAATGGACCAGCAAG  348

seq1  AATTTCAAGAGCCTTCAATCACTCTTACTTTGAAGGCATGGTCAGTAGTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAAGAGCCTTCAATCACTCTTACTTTGAAGGCATGGTCAGTAGTC  398

seq1  TTCTCCACTCTGCCCATTTTAGATGGTTGTTTCTTCCTTGTCTTAATTCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCACTCTGCCCATTTTAGATGGTTGTTTCTTCCTTGTCTTAATTCT  448

seq1  CTTCAGAAACAAAGAGATGTATTCCTAGTGGCAACCCTATTCATCTTAGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGAAACAAAGAGATGTATTCCTAGTGGCAACCCTATTCATCTTAGT  498

seq1  CCACTGGGTGTGACCCTAGGCTTTTAGCTCTTTCTAGTTATTAGCTTTAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGGTGTGACCCTAGGCTTTTAGCTCTTTCTAGTTATTAGCTTTAC  548

seq1  CACAGCTTAAACCTAAAAGTTAGCTTCTTGGCTGCCAGAGGGTTTTTTTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTTAAACCTAAAAGTTAGCTTCTTGGCTGCCAGAGGGTTTTTTTT  598

seq1  TTCTTCTCTTCCCTTTTTAAAAATACATCTGAATTTGATGTCACTGCAGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTCTTCCCTTTTTAAAAATACATCTGAATTTGATGTCACTGCAGT  648

seq1  TGCTAGAAGTTGCCAGAAGGCTGTCCTCCAGCTAACTGTCCCTTGCTCTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGAAGTTGCCAGAAGGCTGTCCTCCAGCTAACTGTCCCTTGCTCTA  698

seq1  GCTTGTATCACGGTTTTGTTACAATTAGCATTCAGAATATGCACTGTCAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTATCACGGTTTTGTTACAATTAGCATTCAGAATATGCACTGTCAT  748

seq1  CTTATTAAAATTTATATTTTTTTAGTGGAGAAGGTTCAAGTAGAGTTTAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTAAAATTTATATTTTTTTAGTGGAGAAGGTTCAAGTAGAGTTTAT  798

seq1  TGTGAGGCTGTGGGCTCATCCCTGCTTTTCTTAGTTAACTGTGTTTGAAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGCTGTGGGCTCATCCCTGCTTTTCTTAGTTAACTGTGTTTGAAT  848

seq1  TCAGCTGAACTTCTGAGCCTCAGCTACTTCAAAAGGCGTCGCGGTTTACT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGAACTTCTGAGCCTCAGCTACTTCAAAAGGCGTCGCGGTTTACT  898

seq1  AAGGTTAACGCCTGAGGGAATATTAACCTTGCAGACAGTAATCTAATTCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTAACGCCTGAGGGAATATTAACCTTGCAGACAGTAATCTAATTCA  948

seq1  GTGTCATCACAAGTGCATAATGCGGGAGTTTGGAGTTTGGCCAAAAAGCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCATCACAAGTGCATAATGCGGGAGTTTGGAGTTTGGCCAAAAAGCC  998

seq1  TATTCAAATGAACATTCAAGGGGTGGGGAGGTGGGTGTGGACAAGGAGAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAAATGAACATTCAAGGGGTGGGGAGGTGGGTGTGGACAAGGAGAG  1048

seq1  AATTC  1051
      |||||
seq2  AATTC  1053

seq1: chr16_33221657_33222532
seq2: B6Ng01-219N02.g_63_947

seq1  GAATTCCCTAAAAGAAGAAAATAGGGGCTAGAGAGATGGCTCAGTGGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTAAAAGAAGAAAATAGGGGCTAGAGAGATGGCTCAGTGGTTA  50

seq1  AGAGCACTGGCTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACTGGCTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCA  100

seq1  CATGGTGGCTCACAACCATCTGTAAGGGGATCTGGTGCCCTCTTCTGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGGCTCACAACCATCTGTAAGGGGATCTGGTGCCCTCTTCTGGTT  150

seq1  TGTTTGAAGACAGTGACAGTGTACTCACATACATACTCACTTTTTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGAAGACAGTGACAGTGTACTCACATACATACTCACTTTTTTTTTT  200

seq1  AAAAAAAAATTACAACAACAACAACAAAACACGAGGAGAAAGATAAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAATTACAACAACAACAACAAAACACGAGGAGAAAGATAAAGCA  250

seq1  AAGTGATGCTTAGAACCCTGGCCAGACAGCACGGCTTGCTACATGAGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATGCTTAGAACCCTGGCCAGACAGCACGGCTTGCTACATGAGCCT  300

seq1  CTTGCCCTGAGTTTGGTACTTTGAACCTAGGGAAGAAGAGAACTGAATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCCTGAGTTTGGTACTTTGAACCTAGGGAAGAAGAGAACTGAATCC  350

seq1  AGAAAGCTGTCTTCTGACCTGCACCTGTGAGGGCGCATACATGTGCGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCTGTCTTCTGACCTGCACCTGTGAGGGCGCATACATGTGCGACA  400

seq1  CACACAAGTAATAATTAAAGAATAGTGGCTAGAAGCCCACTCTCTTATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAGTAATAATTAAAGAATAGTGGCTAGAAGCCCACTCTCTTATAA  450

seq1  CTTGATTGTTGTTTTACGGATTGGACTTTAAGGTTCTTTAGGAGAGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTGTTGTTTTACGGATTGGACTTTAAGGTTCTTTAGGAGAGTGTG  500

seq1  TATGCACAGGTGCTCGCCCCCCCCCCCCCCCCCCGTGTGTGTGTGTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCACAGGTGCTCGCCCCCCCCCCCCCCCCCCGTGTGTGTGTGTGTGT  550

seq1  GTGTATGCTTTGGTTTTAGTCTAGCTACACAGAACAAAAACAGATGAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGCTTTGGTTTTAGTCTAGCTACACAGAACAAAAACAGATGAGTA  600

seq1  TCTTGTTTGATAGAATTTTTAC-TTGTGGTAGGGCAAATAAAAATGTCAC  649
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCTTGTTTGATAGAATTTTTACTTTGTGGTAGGGCAAATAAAAATGTCAC  650

seq1  CAACAAAATCCTCATAGCTTGAG-TTGGAGAGAT-GGCTCAGTTGGTT-A  696
      ||||||||||||||||||||||| |||||||||| ||||||||||||| |
seq2  CAACAAAATCCTCATAGCTTGAGTTTGGAGAGATGGGCTCAGTTGGTTAA  700

seq1  AGAGCACTGGCTACTC-TTTCAGAGGTCCTGAG-TTCAATTCCCAGC-AA  743
      |||||||||||||||| |||||||||||||||| ||||||||||||| ||
seq2  AGAGCACTGGCTACTCTTTTCAGAGGTCCTGAGTTTCAATTCCCAGCAAA  750

seq1  CCACTTGGTGGCTC-ACAACCATCTGTAATGGGATCTGATGCCCTC-TTC  791
      |||||||||||||| | ||||||||||||| ||||||||||||||| |||
seq2  CCACTTGGTGGCTCAAAAACCATCTGTAAT-GGATCTGATGCCCTCTTTC  799

seq1  TGATGTGTCTGAAGATAAAAACAGTGTA-TTCGTATACATAAAATCTTTT  840
      |||||||||||||||| ||||||||||| |||||||||||||||||||||
seq2  TGATGTGTCTGAAGATTAAAACAGTGTATTTCGTATACATAAAATCTTTT  849

seq1  TTTAAAAATCCTAGCTATTCAAGCATGATGGCCTAT  876
      |||||||||||||||| |||||||||||||||||||
seq2  TTTAAAAATCCTAGCTTTTCAAGCATGATGGCCTAT  885