BAC Information

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BAC

Clone NameB6Ng01-219O05
Chromosome16 (Build37)
Map Location 62,062,502 - 62,142,790
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043524, LOC668183
Downstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219O05.bB6Ng01-219O05.g
ACCGA035592GA035593
length1,0341,172
definitionB6Ng01-219O05.b B6Ng01-219O05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,062,502 - 62,063,256)(62,141,616 - 62,142,790)
sequence
gaattcctccagtttgagctcttctttaaaggtctcacagaatgtatatg
acatatgtcagttggattctcacataaacccctgtgtcctcaattggtgt
tctagaaacagactcgaagattatgctaagttcttcttggagatctgtaa
aaacataattcatgttctcatttttttgtgtgtctgatggtatataagca
ctattatttagttgggaaaataaagcttttacttccgagattgtatattc
tttaattccattgttattattattattattattattattattattattat
tattattattattattattattaccattatcatccctattatttttccat
taaaatttcattttattctaatattcatttatttatttatttatatttct
aaagttttcccccttcccattataccctccactagcattccatccaccct
ccccttcacctctaaaagggtgctctcacacccacccaccaactcccatc
tcaccactttagcaacttctttctctggagcatcaagcctccacaagtcc
aggtgcctgccctcccactgaggccagcaagggagtcctctgctgcacgt
gtagcaggagccactgactcgcccatgcatgctctttaaatggtggctta
ggccctgagagctctaaggggtccagttagttgataccatggagttacaa
tctccttcagttcatttagtccctaaatctttcataggggtacccctgat
aagtccaatggttggttatgagtatctgcacctgtctcagtcagtgctag
cagagtctcagaggaaagccaggccaggctactgtatgcaagcacatctt
gaaatcagcaatcatgtcagagtttggtgtctgcacatggatagatccaa
gtttgggatggtctctggatggtctttcattcagtctctgctccatttcc
tttagataggagcaattcttacgtcaaaactcttgagataaccctccatt
ggtggcatgtctatctaatggaggtggtctctca

gaattctttcttatggatttcaaggttttctttaagtactctgaatggaa
gtgcactatcaaccatatttgtaatttcatgttcttaaccttcattcagt
ttagatggtttttcatcaataatttcttgaaagtaatgtatttgaaaatg
ccatatttacagtgtctgtgtgttataatttcatgtttaaaaatttttta
tttgagatcacaaaatatatttaaaatattctgtagtttcattttccaaa
ataacactttacagtatctaagatccatcaattggattagtgagatcaaa
ttataacttatatgaattgttttccaataggtttaatacttctgattcaa
ctgtaaattattttgatagctatgtcatcttttagttattcattgatgtc
aagtatgatttttaaatgtacatatattactaattagttttaatttatgg
aaaattttaagttatttatataatgataaaaatatgttttatatttcagt
aatagtttgaaaggtttgaaaaatgtatttattattataactaattttat
tgttcatgagattgagaccaggcctacatccatattaaatatgtgttgtc
tttatgaattaccttcatgccctaggtaataattaataactcagatgggc
acagcaatgtaacacagaaacatgtgttatatagctaaaattatttctag
ttaggtctgctagaatgattttggaacaaagtagaatatgaaattacagg
cagaagaaagtcttccaatgacatgtgcatcattgtacccattgagcatt
atacagtgagtttaaaaaggatagatcagggcttactctgataaactact
tgccctatagtagtaattttatcatacacagtacttccactgctcagctt
atacactgtaatgagaattgctaacactagtttcagatttcaggatatct
agctacatcaccaatttcttcagtcatgaagataggggtagcatcccatg
aacttctcagcctcttatattctttgagccagtatctcatatcttcacac
atgacacgtgcacaccatacacacacacttacacaaaccacacatattgc
agagaacacaacattgcagctcatgttttttttctttgcaggctcaattt
ttttctgaaaagttcaattaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_62062502_62063256
seq2: B6Ng01-219O05.b_46_800

seq1  GAATTCCTCCAGTTTGAGCTCTTCTTTAAAGGTCTCACAGAATGTATATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCAGTTTGAGCTCTTCTTTAAAGGTCTCACAGAATGTATATG  50

seq1  ACATATGTCAGTTGGATTCTCACATAAACCCCTGTGTCCTCAATTGGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGTCAGTTGGATTCTCACATAAACCCCTGTGTCCTCAATTGGTGT  100

seq1  TCTAGAAACAGACTCGAAGATTATGCTAAGTTCTTCTTGGAGATCTGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAACAGACTCGAAGATTATGCTAAGTTCTTCTTGGAGATCTGTAA  150

seq1  AAACATAATTCATGTTCTCATTTTTTTGTGTGTCTGATGGTATATAAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAATTCATGTTCTCATTTTTTTGTGTGTCTGATGGTATATAAGCA  200

seq1  CTATTATTTAGTTGGGAAAATAAAGCTTTTACTTCCGAGATTGTATATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATTTAGTTGGGAAAATAAAGCTTTTACTTCCGAGATTGTATATTC  250

seq1  TTTAATTCCATTGTTATTATTATTATTATTATTATTATTATTATTATTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTCCATTGTTATTATTATTATTATTATTATTATTATTATTATTAT  300

seq1  TATTATTATTATTATTATTATTACCATTATCATCCCTATTATTTTTCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTATTATTATTATTATTACCATTATCATCCCTATTATTTTTCCAT  350

seq1  TAAAATTTCATTTTATTCTAATATTCATTTATTTATTTATTTATATTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTCATTTTATTCTAATATTCATTTATTTATTTATTTATATTTCT  400

seq1  AAAGTTTTCCCCCTTCCCATTATACCCTCCACTAGCATTCCATCCACCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTTCCCCCTTCCCATTATACCCTCCACTAGCATTCCATCCACCCT  450

seq1  CCCCTTCACCTCTAAAAGGGTGCTCTCACACCCACCCACCAACTCCCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCACCTCTAAAAGGGTGCTCTCACACCCACCCACCAACTCCCATC  500

seq1  TCACCACTTTAGCAACTTCTTTCTCTGGAGCATCAAGCCTCCACAAGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCACTTTAGCAACTTCTTTCTCTGGAGCATCAAGCCTCCACAAGTCC  550

seq1  AGGTGCCTGCCCTCCCACTGAGGCCAGCAAGGGAGTCCTCTGCTGCACGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCCTGCCCTCCCACTGAGGCCAGCAAGGGAGTCCTCTGCTGCACGT  600

seq1  GTAGCAGGAGCCACTGACTCGCCCATGCATGCTCTTTAAATGGTGGCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAGGAGCCACTGACTCGCCCATGCATGCTCTTTAAATGGTGGCTTA  650

seq1  GGCCCTGAGAGCTCTAAGGGGTCCAGTTAGTTGATACCATGGAGTTACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGAGAGCTCTAAGGGGTCCAGTTAGTTGATACCATGGAGTTACAA  700

seq1  TCTCCTTCAGTTCATTTAGTCCCTAAATCTTTCATAGGGGTACCCCTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTCAGTTCATTTAGTCCCTAAATCTTTCATAGGGGTACCCCTGAT  750

seq1  AAGTC  755
      |||||
seq2  AAGTC  755


seq1: chr16_62141616_62142790
seq2: B6Ng01-219O05.g_69_1240 (reverse)

seq1  ATTAATTGATTTTTCTCCAGAAAAAAATGGAGCCTGCAAAGAAAAAAAAA  50
      |||||||||  ||  | ||||||||||| |||||||||||||||||||| 
seq2  ATTAATTGAACTT--TTCAGAAAAAAATTGAGCCTGCAAAGAAAAAAAAC  48

seq1  ATTGGAGCCTGCAATG-TGTG-TCTCTGC-ATATGTGT-GTTTGTGTAAG  96
      ||  ||| |||||||| |||| ||||||| |||||||| |||||||||||
seq2  AT--GAG-CTGCAATGTTGTGTTCTCTGCAATATGTGTGGTTTGTGTAAG  95

seq1  TTGTGTGTGTAT-GTGTGCACGTGTCCATGTGTGAAGATATGAGATACTG  145
       ||||||||||| |||||||||||| ||||||||||||||||||||||||
seq2  -TGTGTGTGTATGGTGTGCACGTGT-CATGTGTGAAGATATGAGATACTG  143

seq1  GCTCAAAGAATAT-AGAGGCTGAGAAGTTCATGGGATGCTACCCCTATCT  194
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GCTCAAAGAATATAAGAGGCTGAGAAGTTCATGGGATGCTACCCCTATCT  193

seq1  TCATGACCTGAAGAAATTGGTGATGTAGCTAGATATCCTGAAATCTGAAA  244
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGA-CTGAAGAAATTGGTGATGTAGCTAGATATCCTGAAATCTGAAA  242

seq1  CTAGTGTTAGCAATTCTCATTACAGTGTATAAGCCTGAGCAGTGGAAGTA  294
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTAGTGTTAGCAATTCTCATTACAGTGTATAAG-CTGAGCAGTGGAAGTA  291

seq1  CTGTGTATGATAAAATTACTACTATAGGGCAAGTAGTTTATCAGAGTAAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTATGATAAAATTACTACTATAGGGCAAGTAGTTTATCAGAGTAAG  341

seq1  CCCTGATCTATCCTTTTTAAACTCACTGTATAATGCTCAATGGGTACAAT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGATCTATCCTTTTTAAACTCACTGTATAATGCTCAATGGGTACAAT  391

seq1  GATGCACATGTCATTGGAAGACTTTCTTCTGCCTGTAATTTCATATTCTA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCACATGTCATTGGAAGACTTTCTTCTGCCTGTAATTTCATATTCTA  441

seq1  CTTTGTTCCAAAATCATTCTAGCAGACCTAACTAGAAATAATTTTAGCTA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTCCAAAATCATTCTAGCAGACCTAACTAGAAATAATTTTAGCTA  491

seq1  TATAACACATGTTTCTGTGTTACATTGCTGTGCCCATCTGAGTTATTAAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACACATGTTTCTGTGTTACATTGCTGTGCCCATCTGAGTTATTAAT  541

seq1  TATTACCTAGGGCATGAAGGTAATTCATAAAGACAACACATATTTAATAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACCTAGGGCATGAAGGTAATTCATAAAGACAACACATATTTAATAT  591

seq1  GGATGTAGGCCTGGTCTCAATCTCATGAACAATAAAATTAGTTATAATAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTAGGCCTGGTCTCAATCTCATGAACAATAAAATTAGTTATAATAA  641

seq1  TAAATACATTTTTCAAACCTTTCAAACTATTACTGAAATATAAAACATAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACATTTTTCAAACCTTTCAAACTATTACTGAAATATAAAACATAT  691

seq1  TTTTATCATTATATAAATAACTTAAAATTTTCCATAAATTAAAACTAATT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCATTATATAAATAACTTAAAATTTTCCATAAATTAAAACTAATT  741

seq1  AGTAATATATGTACATTTAAAAATCATACTTGACATCAATGAATAACTAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATATATGTACATTTAAAAATCATACTTGACATCAATGAATAACTAA  791

seq1  AAGATGACATAGCTATCAAAATAATTTACAGTTGAATCAGAAGTATTAAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGACATAGCTATCAAAATAATTTACAGTTGAATCAGAAGTATTAAA  841

seq1  CCTATTGGAAAACAATTCATATAAGTTATAATTTGATCTCACTAATCCAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTGGAAAACAATTCATATAAGTTATAATTTGATCTCACTAATCCAA  891

seq1  TTGATGGATCTTAGATACTGTAAAGTGTTATTTTGGAAAATGAAACTACA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGATCTTAGATACTGTAAAGTGTTATTTTGGAAAATGAAACTACA  941

seq1  GAATATTTTAAATATATTTTGTGATCTCAAATAAAAAATTTTTAAACATG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTTTAAATATATTTTGTGATCTCAAATAAAAAATTTTTAAACATG  991

seq1  AAATTATAACACACAGACACTGTAAATATGGCATTTTCAAATACATTACT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATAACACACAGACACTGTAAATATGGCATTTTCAAATACATTACT  1041

seq1  TTCAAGAAATTATTGATGAAAAACCATCTAAACTGAATGAAGGTTAAGAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGAAATTATTGATGAAAAACCATCTAAACTGAATGAAGGTTAAGAA  1091

seq1  CATGAAATTACAAATATGGTTGATAGTGCACTTCCATTCAGAGTACTTAA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAATTACAAATATGGTTGATAGTGCACTTCCATTCAGAGTACTTAA  1141

seq1  AGAAAACCTTGAAATCCATAAGAAAGAATTC  1175
      |||||||||||||||||||||||||||||||
seq2  AGAAAACCTTGAAATCCATAAGAAAGAATTC  1172


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