BAC Information

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BAC

Clone NameB6Ng01-220C24
Chromosome16 (Build37)
Map Location 31,943,987 - 32,058,051
singlet/doubletdoublet
Overlap genePigz, 0610012G03Rik, Ncbp2, Senp5, Pak2
Upstream geneAI480653, Centb2, Ppp1r2, Apod, 1700007E05Rik, Bdh1, Gm536, Dlg1, Mfi2, LOC677155
Downstream genePigx, 1500031L02Rik, Lrrc33, Bex6, Fbxo45, Wdr53, 2310010M20Rik, Rnf168, LOC666966, Ubxd7, Tm4sf19, 0610012D17Rik, Pcyt1a, Osta, Zdhhc19, LOC385820, Tfrc, Tnk2, ENSMUSG00000075265, LOC672302, Muc4, Muc20, 1700021K19Rik, Fyttd1, Lrch3, EG625660, Iqcg, Rpl35a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220C24.bB6Ng01-220C24.g
ACCGA035811GA035812
length1,1381,140
definitionB6Ng01-220C24.b B6Ng01-220C24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,943,987 - 31,945,125)(32,056,906 - 32,058,051)
sequence
gaattcatttaagggaactgcgttcattctttccctgctgttatccctct
catgcttaaaccagctgaaacacataaaatccttttcctgttttgtgtct
ttgcctgtctcctctgcatccaggtggaagctctctgctgttaaagagct
ggggagagaggacaggccacctgagactctcccacacaaagtagctcatt
gattgagcagtaaaacccaagcggtgcgatgccggttattgtgcgggaag
tgtccaccagggggccttgcaatcctgccgataacccagaacgcgagcct
gcgcaagcctaagcttggaactggctcacccctgcctctctctctgcaga
ggacatcctgggtgtgcaggctacacggccctgggaattttaccccagca
gctcctgccgcactgtggtcttcccactgctgacctctggctctaccttc
tggttactcaggctctgggaagagctggggctctggcctggtctggtgag
tggctacatgctgctggtggggccccgattccttctcaccgccctctcct
ttgccctggactgggctgtgtacgatctggccccgttgtggggggcagat
cgttggaatgccttgtgcctgctgtctggttcctatgtcaccctggtttt
ctacacaagaaccttctccaacaccatcgagggactgctcttcacctggc
tgctggtgctggtgtcccctggtgtggtaaggagtcctacatcaaagaag
cctaccccaggtccacggtggcacagatatcttcttggtgttatcttggc
tgctggcttcttcaaccggccaacctttctagcctttgctctggcccccc
tctctctctggggcatccatagagcttcagaacttggtggcatcagggcc
ctgatccaggaggccctggtgctgttgccaggggctgctcttgctgcagt
gctgtgtgtagccacggacagctggtacttctccagctctcgagatcaca
ggcgtctttctcacacttgccaacttctgtactaacaacttgacccccaa
aacttgcaaggcacggcacacaaacgcacggctcacttcactgggcagtc
aatgggcttcttgcttttgggtgttgcaatgctcaagc
gaattcctcagaaactcatgagccagatagcctggcatgcacagcggtaa
atgagaccctggctcaaaacatggaaagcaagggcttatccatgaagtta
ccatttgacctccaaatgtgtgcttacacattctcaagaagattaaataa
caaagacaaggggactagatagcttcttccagaggacaaagttcagttat
tggcacctacattaggtgactcacagcctctagtaactccaactccagtg
gatcagatgtcttcttttggctacctcgagcaaccccacacaggcaaaac
tcacacaagcacacacacataatttttttaaatataaaagacaaaatata
tatctatacatgaatgcaagtagagttaaaatatccaccaagatagctat
gagagagatgtcacctgtctatctgagcagagcattaaaaggtgacaggc
agtcttggcattacagccacactgccttattaaaatgaactctaatgtcc
aaaaactgttattttgtgtttgtaccacagtaagagccaagattttaagc
tctactcaaaacaaaacaaaacaaacaaaaagactttttatctatttatg
ttcattaaaaactaatagtgatatattattttaaaatgtcatacacaaaa
attaattgattgtgctgtttgttaatatatttggagttatttaaaattca
tattgagaaaaatgtatgtattttcagttactgtagacaaacatctacat
aagactgttcaactgattgttgttttatatcaaacaacttttataatact
catttttattgttaaaatattttataaattttaaagaatatggtaaaaaa
aggtattgcaggttttgaaggggctctctgggaggagttggggtacaaaa
ggaaagaagaatgtgatttactcaaatatgtttttaaatgttaacaaatt
cagattttaaaaaagcatctctttggactacttaatggtatttattattt
gttcccttagtgactgccaattctgactactgtaagctgaatctcagcct
tagcttgaattggcattcctgatggtgtcttgagaactggggcatcctta
tgtgtcatggaatgtttgtatattcagatatttgttttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_31943987_31945125
seq2: B6Ng01-220C24.b_43_1180

seq1  GAATTCATTTAAGGGAACTGCGTTCATTCTTTCCCTGCTGTTATCCCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTAAGGGAACTGCGTTCATTCTTTCCCTGCTGTTATCCCTCT  50

seq1  CATGCTTAAACCAGCTGAAACACATAAAATCCTTTTCCTGTTTTGTGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTAAACCAGCTGAAACACATAAAATCCTTTTCCTGTTTTGTGTCT  100

seq1  TTGCCTGTCTCCTCTGCATCCAGGTGGAAGCTCTCTGCTGTTAAAGAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGTCTCCTCTGCATCCAGGTGGAAGCTCTCTGCTGTTAAAGAGCT  150

seq1  GGGGAGAGAGGACAGGCCACCTGAGACTCTCCCACACAAAGTAGCTCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGAGAGGACAGGCCACCTGAGACTCTCCCACACAAAGTAGCTCATT  200

seq1  GATTGAGCAGTAAAACCCAAGCGGTGCGATGCCGGTTATTGTGCGGGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAGCAGTAAAACCCAAGCGGTGCGATGCCGGTTATTGTGCGGGAAG  250

seq1  TGTCCACCAGGGGGCCTTGCAATCCTGCCGATAACCCAGAACGCGAGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCACCAGGGGGCCTTGCAATCCTGCCGATAACCCAGAACGCGAGCCT  300

seq1  GCGCAAGCCTAAGCTTGGAACTGGCTCACCCCTGCCTCTCTCTCTGCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCAAGCCTAAGCTTGGAACTGGCTCACCCCTGCCTCTCTCTCTGCAGA  350

seq1  GGACATCCTGGGTGTGCAGGCTACACGGCCCTGGGAATTTTACCCCAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATCCTGGGTGTGCAGGCTACACGGCCCTGGGAATTTTACCCCAGCA  400

seq1  GCTCCTGCCGCACTGTGGTCTTCCCACTGCTGACCTCTGGCTCTACCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGCCGCACTGTGGTCTTCCCACTGCTGACCTCTGGCTCTACCTTC  450

seq1  TGGTTACTCAGGCTCTGGGAAGAGCTGGGGCTCTGGCCTGGTCTGGTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTACTCAGGCTCTGGGAAGAGCTGGGGCTCTGGCCTGGTCTGGTGAG  500

seq1  TGGCTACATGCTGCTGGTGGGGCCCCGATTCCTTCTCACCGCCCTCTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTACATGCTGCTGGTGGGGCCCCGATTCCTTCTCACCGCCCTCTCCT  550

seq1  TTGCCCTGGACTGGGCTGTGTACGATCTGGCCCCGTTGTGGGGGGCAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCTGGACTGGGCTGTGTACGATCTGGCCCCGTTGTGGGGGGCAGAT  600

seq1  CGTTGGAATGCCTTGTGCCTGCTGTCTGGTTCCTATGTCACCCTGGTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGGAATGCCTTGTGCCTGCTGTCTGGTTCCTATGTCACCCTGGTTTT  650

seq1  CTACACAAGAACCTTCTCCAACACCATCGAGGGACTGCTCTTCACCTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAAGAACCTTCTCCAACACCATCGAGGGACTGCTCTTCACCTGGC  700

seq1  TGCTGGTGCTGGTGTCCCCTGGTGTGGTAAGGAGTCCTACATCAAAGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTGCTGGTGTCCCCTGGTGTGGTAAGGAGTCCTACATCAAAGAAG  750

seq1  CCTACCCCAGGTCCACGGTGGCACAGATATCTTCTTGGTGTTATCTTGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCCCAGGTCCACGGTGGCACAGATATCTTCTTGGTGTTATCTTGGC  800

seq1  TGCTGGCTTCTTCAACCGGCCAACCTTTCTAGCCTTTGCTCTGGCCCCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCTTCTTCAACCGGCCAACCTTTCTAGCCTTTGCTCTGGCCCCCC  850

seq1  TCTCTCTCTGGGGCATCCATAGAGCTTCAGAACTTGGTGGCATCAGGGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTGGGGCATCCATAGAGCTTCAGAACTTGGTGGCATCAGGGCC  900

seq1  CTGATCCAGGAGGCCCTGGTGCTGTTGCCAGGGGCTGCTCTTGCTGCAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCCAGGAGGCCCTGGTGCTGTTGCCAGGGGCTGCTCTTGCTGCAGT  950

seq1  GCTGTGTGTAGCCACGGACAGCTGGTACTTCTCCAGCCTCTCGAGATCCA  1000
      |||||||||||||||||||||||||||||||||||| |||||||||| ||
seq2  GCTGTGTGTAGCCACGGACAGCTGGTACTTCTCCAG-CTCTCGAGAT-CA  998

seq1  CAGGCGTCTTTCTCACACCTGCCAACTTCTTGTACTACAACCTGGACCCC  1050
      |||||||||||||||||| |||||||||| |||||||  | || ||||||
seq2  CAGGCGTCTTTCTCACACTTGCCAACTTC-TGTACTAACAACTTGACCCC  1047

seq1  CAAAACCTTGCCAGGCACGGCACAC--ACGCACGGCTCAC-TCACTTGGC  1097
      ||||| ||||| |||||||||||||  ||||||||||||| ||||| |||
seq2  CAAAA-CTTGCAAGGCACGGCACACAAACGCACGGCTCACTTCACTGGGC  1096

seq1  AGTCAAT-GGCTTCCTGCTCTTTGGGGTGTTGC-ATGCTCAAGC  1139
      ||||||| |||||| ||  |||| ||||||||| ||||||||||
seq2  AGTCAATGGGCTTCTTG--CTTTTGGGTGTTGCAATGCTCAAGC  1138

seq1: chr16_32056906_32058051
seq2: B6Ng01-220C24.g_64_1203 (reverse)

seq1  ACAAAACAA--ATCTGAA-ATACAAACA-TCAATAAACACATAAAGAATG  46
      |||||||||  ||||||| ||||||||| || ||  |||||||| ||   
seq2  ACAAAACAAATATCTGAATATACAAACATTCCAT-GACACATAAGGATGC  49

seq1  CCCAG-TCTCAAGACACCATCAGGGAAATG-CAAATCAAGGCTAGGCTGA  94
      ||||| ||||||||||||||||||  |||| ||| |||||   |||||||
seq2  CCCAGTTCTCAAGACACCATCAGG--AATGCCAATTCAAGCTAAGGCTGA  97

seq1  GATTCCAGCTTACCAGTAGTCAGAA-TGGCAGTCAACTAAGGGAACAAAT  143
      |||| ||||||| |||||||||||| |||||||| |||||||||||||||
seq2  GATT-CAGCTTA-CAGTAGTCAGAATTGGCAGTC-ACTAAGGGAACAAAT  144

seq1  AAATAAATACCATTAAGTAGTCCAAAGAGAATGCTTTTTTTTAAAATCTG  193
       |||||||||||||||||||||||||||| ||||  ||||||||||||||
seq2  -AATAAATACCATTAAGTAGTCCAAAGAG-ATGC--TTTTTTAAAATCTG  190

seq1  AATTTGTTAACATTTAAAAACATATTTTGAGTAAATCACATTCTTCTTTC  243
      |||||||||||||||||||||||| |||||||||||||||||||||||| 
seq2  AATTTGTTAACATTTAAAAACATA-TTTGAGTAAATCACATTCTTCTTT-  238

seq1  CCTTTTGTACCCCAACTCCTCCCAGAGAGCCCCCTTCAAAACCTGCAATA  293
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCTTTTGTACCCCAACTCCTCCCAGAGAG-CCCCTTCAAAACCTGCAATA  287

seq1  CCTTTTTTTACCATATTCTTTAAAATTTATAAAATATTTTAACAATAAAA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTTTACCATATTCTTTAAAATTTATAAAATATTTTAACAATAAAA  337

seq1  ATGAGTATTATAAAAGTTGTTTGATATAAAACAACAATCAGTTGAACAGT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTATTATAAAAGTTGTTTGATATAAAACAACAATCAGTTGAACAGT  387

seq1  CTTATGTAGATGTTTGTCTACAGTAACTGAAAATACATACATTTTTCTCA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGTAGATGTTTGTCTACAGTAACTGAAAATACATACATTTTTCTCA  437

seq1  ATATGAATTTTAAATAACTCCAAATATATTAACAAACAGCACAATCAATT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAATTTTAAATAACTCCAAATATATTAACAAACAGCACAATCAATT  487

seq1  AATTTTTGTGTATGACATTTTAAAATAATATATCACTATTAGTTTTTAAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTGTGTATGACATTTTAAAATAATATATCACTATTAGTTTTTAAT  537

seq1  GAACATAAATAGATAAAAAGTCTTTTTGTTTGTTTTGTTTTGTTTTGAGT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATAAATAGATAAAAAGTCTTTTTGTTTGTTTTGTTTTGTTTTGAGT  587

seq1  AGAGCTTAAAATCTTGGCTCTTACTGTGGTACAAACACAAAATAACAGTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTAAAATCTTGGCTCTTACTGTGGTACAAACACAAAATAACAGTT  637

seq1  TTTGGACATTAGAGTTCATTTTAATAAGGCAGTGTGGCTGTAATGCCAAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGACATTAGAGTTCATTTTAATAAGGCAGTGTGGCTGTAATGCCAAG  687

seq1  ACTGCCTGTCACCTTTTAATGCTCTGCTCAGATAGACAGGTGACATCTCT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTGTCACCTTTTAATGCTCTGCTCAGATAGACAGGTGACATCTCT  737

seq1  CTCATAGCTATCTTGGTGGATATTTTAACTCTACTTGCATTCATGTATAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAGCTATCTTGGTGGATATTTTAACTCTACTTGCATTCATGTATAG  787

seq1  ATATATATTTTGTCTTTTATATTTAAAAAAATTATGTGTGTGTGCTTGTG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATTTTGTCTTTTATATTTAAAAAAATTATGTGTGTGTGCTTGTG  837

seq1  TGAGTTTTGCCTGTGTGGGGTTGCTCGAGGTAGCCAAAAGAAGACATCTG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTTGCCTGTGTGGGGTTGCTCGAGGTAGCCAAAAGAAGACATCTG  887

seq1  ATCCACTGGAGTTGGAGTTACTAGAGGCTGTGAGTCACCTAATGTAGGTG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTGGAGTTGGAGTTACTAGAGGCTGTGAGTCACCTAATGTAGGTG  937

seq1  CCAATAACTGAACTTTGTCCTCTGGAAGAAGCTATCTAGTCCCCTTGTCT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAACTGAACTTTGTCCTCTGGAAGAAGCTATCTAGTCCCCTTGTCT  987

seq1  TTGTTATTTAATCTTCTTGAGAATGTGTAAGCACACATTTGGAGGTCAAA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATTTAATCTTCTTGAGAATGTGTAAGCACACATTTGGAGGTCAAA  1037

seq1  TGGTAACTTCATGGATAAGCCCTTGCTTTCCATGTTTTGAGCCAGGGTCT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAACTTCATGGATAAGCCCTTGCTTTCCATGTTTTGAGCCAGGGTCT  1087

seq1  CATTTACCGCTGTGCATGCCAGGCTATCTGGCTCATGAGTTTCTGAGGAA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACCGCTGTGCATGCCAGGCTATCTGGCTCATGAGTTTCTGAGGAA  1137

seq1  TTC  1146
      |||
seq2  TTC  1140