BAC Information

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BAC

Clone NameB6Ng01-220K23
Chromosome16 (Build37)
Map Location 12,525,105 - 12,692,653
singlet/doubletdoublet
Overlap genenone
Upstream gene4933437K13Rik, LOC100043171, C530044N13Rik, 2700045P11Rik
Downstream geneEG622509, LOC622553, Ercc4, Gt4-1, Mkl2, Parn, LOC100043196, 3110001I22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220K23.bB6Ng01-220K23.g
ACCGA036181GA036182
length9521,074
definitionB6Ng01-220K23.b B6Ng01-220K23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,525,105 - 12,526,057)(12,691,579 - 12,692,653)
sequence
gaattcaatggcattttctaatgaaatccaagatgttgacattttacact
ctgcagtgcttaacttctctggtgggtggctcttgctatgtagcccagtc
tggcctcagatgtgtattctttaactttcttattgctatcaccaattttt
tgatgggaacaacctaaggcagaagggattcttttggctcacagtttgaa
agacaacgatccattatggtggggagacaatggcaaagttcctggtggga
gacagtaaggctgacacttctctgggacccattatacctctgaaaaccag
aatcagagggtatgaacctcaaatgaggccacctgtaaccatttctcctg
tctttagaaccctacatatactcactagacaccatgtcccaaaggtttca
tcctcaccacacacataggaaaaataaaaacagtgccaccagcttgggat
cagttcaaacacatgagtctgtgggggacattttatgttcaaaccattac
aaatatcccaatctggccttgaacttgctatatagaatgggttggctata
aattcttaaacatcttgctttggcctcctggaagccagaactataggtat
gttcaccatatccaactcttaaagttgatacttttcaagatttaattttt
tatttatgtatacagggggcattgtgtacatgtgagcacaggtgtgtgtg
tgtgtgtgtgtgtgtgtgtatggtatacaggttcatgcagatgcccacaa
aagccagaagaatgcatcacatcccctgtagctggtgttacaagtagtta
tgagtcacctgacctgaaagctgaaaacctgatcctctgcagaccactac
tgattttaaccactagtcatttctcctgctcctcaattccatcttcaaat
gaaaatggttcatacaaatctttatagtttccaggatttagcatttccat
gg

gaattcatcttcatgggtgaattacaggcacctatgcccccatggcgctg
agtcaaggagacagtgagaagtttgtgttccagggtcactaactccttct
agttatggggaaaggaagggagaaagatctgtggagcacacacgtcttca
ttaatttatcattaatatttattgaatattaagagctgagtatcaagtga
tagactcccaagacaatcacactggtcactgatgtgacaagagaggcgat
acactggataagatacacacaatggaacctgactcattgggaaatgaatg
gatttcctcttagttcttgtaaccaatgaagaatttgagaaccaggagtg
ttgggttgcttatcactgagctcataggctgaacccatagagatttgttt
tgcaaattccaaggttttgagactttgaccttctctgagtcttggagatt
gatgttgtctttctcctaaacacaaaggaagctgggattccctccacctg
agtggcatgtggggcaaaatctacagaaaggccattgaaacactggacta
gccttacctgttacctccttccagcctagctaggctggctcagaccatct
gccacggaggcagagccacctgctgtgctgcttctcatcactctcctttg
atgttacactgcctgctgcctgcctgaggccaaactggttctccaagatc
ttccagagttagctgcgaactgtgattttcgtgggttcccactaaaaggc
tgatctgacaactacaaaggaaccttgcatgactgggaatgggcctccct
cttctttataaagtgtgtttgccgacattaagttgaactcttgatcagaa
tattgtctgggttccatttctctctctacccacctaggattcccttcttt
tctttcagttccaagatgtatcccaggctcgaacccaagacatgagagct
gcagccagcccacacttaccatgttttcttgagactttcatggccatcta
cttcccaggcaggtatctgtcttatttttattttcttgttgttagggaag
aaggtctccaggttgatagtccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_12525105_12526057
seq2: B6Ng01-220K23.b_51_1001

seq1  GAATTCAATGGCATTTTCTAATGAAATCCAAGATGTTGACATTTTACACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGGCATTTTCTAATGAAATCCAAGATGTTGACATTTTACACT  50

seq1  CTGCAGTGCTTAACTTCTCTGGTGGGTGGCTCTTGCTATGTAGCCCAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTGCTTAACTTCTCTGGTGGGTGGCTCTTGCTATGTAGCCCAGTC  100

seq1  TGGCCTCAGATGTGTATTCTTTAACTTTCTTATTGCTATCACCAATTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCAGATGTGTATTCTTTAACTTTCTTATTGCTATCACCAATTTTT  150

seq1  TGATGGGAACAACCTAAGGCAGAAGGGATTCTTTTGGCTCACAGTTTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGGAACAACCTAAGGCAGAAGGGATTCTTTTGGCTCACAGTTTGAA  200

seq1  AGACAACGATCCATTATGGTGGGGAGACAATGGCAAAGTTCCTGGTGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACGATCCATTATGGTGGGGAGACAATGGCAAAGTTCCTGGTGGGA  250

seq1  GACAGTAAGGCTGACACTTCTCTGGGACCCATTATACCTCTGAAAACCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTAAGGCTGACACTTCTCTGGGACCCATTATACCTCTGAAAACCAG  300

seq1  AATCAGAGGGTATGAACCTCAAATGAGGCCACCTGTAACCATTTCTCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGAGGGTATGAACCTCAAATGAGGCCACCTGTAACCATTTCTCCTG  350

seq1  TCTTTAGAACCCTACATATACTCACTAGACACCATGTCCCAAAGGTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGAACCCTACATATACTCACTAGACACCATGTCCCAAAGGTTTCA  400

seq1  TCCTCACCACACACATAGGAAAAATAAAAACAGTGCCACCAGCTTGGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACCACACACATAGGAAAAATAAAAACAGTGCCACCAGCTTGGGAT  450

seq1  CAGTTCAAACACATGAGTCTGTGGGGGACATTTTATGTTCAAACCATTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCAAACACATGAGTCTGTGGGGGACATTTTATGTTCAAACCATTAC  500

seq1  AAATATCCCAATCTGGCCTTGAACTTGCTATATAGAATGGGTTGGCTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCCCAATCTGGCCTTGAACTTGCTATATAGAATGGGTTGGCTATA  550

seq1  AATTCTTAAACATCTTGCTTTGGCCTCCTGGAAGCCAGAACTATAGGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTAAACATCTTGCTTTGGCCTCCTGGAAGCCAGAACTATAGGTAT  600

seq1  GTTCACCATATCCAACTCTTAAAGTTGATACTTTTCAAGATTTAATTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACCATATCCAACTCTTAAAGTTGATACTTTTCAAGATTTAATTTTT  650

seq1  TATTTATGTATACA-GGGGCATTGTGTACATGTGAGCACAGGTGTGTGTG  699
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TATTTATGTATACAGGGGGCATTGTGTACATGTGAGCACAGGTGTGTGTG  700

seq1  TGTGTGTGTGTGTGTGTGTATGGTATACAGGTTCATGCAGATGCCCACAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTATGGTATACAGGTTCATGCAGATGCCCACAA  750

seq1  AAGCCAGAAGAATGCATCACATCCCCTGTAGCTGGTGTTACAAGTAGTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGAAGAATGCATCACATCCCCTGTAGCTGGTGTTACAAGTAGTTA  800

seq1  TGAGTCACCTGACCTGGAAGCTGAAAACCTGGTCCTCTGCAAGAGCAGCT  849
      |||||||||||||||| |||||||||||||| |||||||| ||| || ||
seq2  TGAGTCACCTGACCTGAAAGCTGAAAACCTGATCCTCTGC-AGACCA-CT  848

seq1  ACTGATTTTAACCACTAAGTCATTTCTCCTGCTCCTCAATTTCATTTTTC  899
      |||||||||||||||| |||||||||||||||||||||||| || | |||
seq2  ACTGATTTTAACCACT-AGTCATTTCTCCTGCTCCTCAATTCCA-TCTTC  896

seq1  AAATG-AAATTGTTCATACAAGTCTTTATAGTTTTCAGGATTAAGCATTT  948
      ||||| |||| |||||||||| |||||||||||| ||||||| |||||||
seq2  AAATGAAAATGGTTCATACAAATCTTTATAGTTTCCAGGATTTAGCATTT  946

seq1  CCATG  953
      |||||
seq2  CCATG  951


seq1: chr16_12691579_12692653
seq2: B6Ng01-220K23.g_63_1136 (reverse)

seq1  ATGGACTATC-ACCTGGAGTCTTTCTCCCTTAACAAC-AGGAAATAAAAA  48
      |||||||||| |||||||| | |||| || ||||||| || |||||||||
seq2  ATGGACTATCAACCTGGAGACCTTCTTCCCTAACAACAAGAAAATAAAAA  50

seq1  TAAGACAGATAACCTGCCCTGGGAAGTAGATGGCCATGAAAGGTCTCAAG  98
      |||||||||| ||||| |||||||||||||||||||||||| ||||||||
seq2  TAAGACAGAT-ACCTG-CCTGGGAAGTAGATGGCCATGAAA-GTCTCAAG  97

seq1  AAAACATGGTAAGTGTTGGGGCTGGCCTGCAGCTCTCATGTC-TGGGTTC  147
      ||||||||||||||||  ||||||| |||||||||||||||| |||||||
seq2  AAAACATGGTAAGTGT--GGGCTGG-CTGCAGCTCTCATGTCTTGGGTTC  144

seq1  GAGCCTGGGATACATCTTGGAACTGAAAGAAAAG-AGGGAAT-CTAGGTG  195
      |||||||||||||||||||||||||||||||||| ||||||| |||||||
seq2  GAGCCTGGGATACATCTTGGAACTGAAAGAAAAGAAGGGAATCCTAGGTG  194

seq1  GGTAGAGAGAGAAATGGAACCAAGACAATATTCTGATCAAG-GTTCAACT  244
      ||||||||||||||||||||| ||||||||||||||||||| ||||||| 
seq2  GGTAGAGAGAGAAATGGAACCCAGACAATATTCTGATCAAGAGTTCAAC-  243

seq1  TTAATGTCGGCAAACACACTTTATAAAGAAGAGGGAGGCCCATTCCCAGT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTCGGCAAACACACTTTATAAAGAAGAGGGAGGCCCATTCCCAGT  293

seq1  CATGCAAGGTTCCTTTGTAGTTGTCAGATCAGCCTTTTAGTGGGAACCCA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAAGGTTCCTTTGTAGTTGTCAGATCAGCCTTTTAGTGGGAACCCA  343

seq1  CGAAAATCACAGTTCGCAGCTAACTCTGGAAGATCTTGGAGAACCAGTTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAATCACAGTTCGCAGCTAACTCTGGAAGATCTTGGAGAACCAGTTT  393

seq1  GGCCTCAGGCAGGCAGCAGGCAGTGTAACATCAAAGGAGAGTGATGAGAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCAGGCAGGCAGCAGGCAGTGTAACATCAAAGGAGAGTGATGAGAA  443

seq1  GCAGCACAGCAGGTGGCTCTGCCTCCGTGGCAGATGGTCTGAGCCAGCCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCACAGCAGGTGGCTCTGCCTCCGTGGCAGATGGTCTGAGCCAGCCT  493

seq1  AGCTAGGCTGGAAGGAGGTAACAGGTAAGGCTAGTCCAGTGTTTCAATGG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGGCTGGAAGGAGGTAACAGGTAAGGCTAGTCCAGTGTTTCAATGG  543

seq1  CCTTTCTGTAGATTTTGCCCCACATGCCACTCAGGTGGAGGGAATCCCAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTGTAGATTTTGCCCCACATGCCACTCAGGTGGAGGGAATCCCAG  593

seq1  CTTCCTTTGTGTTTAGGAGAAAGACAACATCAATCTCCAAGACTCAGAGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTTGTGTTTAGGAGAAAGACAACATCAATCTCCAAGACTCAGAGA  643

seq1  AGGTCAAAGTCTCAAAACCTTGGAATTTGCAAAACAAATCTCTATGGGTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAAAGTCTCAAAACCTTGGAATTTGCAAAACAAATCTCTATGGGTT  693

seq1  CAGCCTATGAGCTCAGTGATAAGCAACCCAACACTCCTGGTTCTCAAATT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTATGAGCTCAGTGATAAGCAACCCAACACTCCTGGTTCTCAAATT  743

seq1  CTTCATTGGTTACAAGAACTAAGAGGAAATCCATTCATTTCCCAATGAGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTGGTTACAAGAACTAAGAGGAAATCCATTCATTTCCCAATGAGT  793

seq1  CAGGTTCCATTGTGTGTATCTTATCCAGTGTATCGCCTCTCTTGTCACAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTCCATTGTGTGTATCTTATCCAGTGTATCGCCTCTCTTGTCACAT  843

seq1  CAGTGACCAGTGTGATTGTCTTGGGAGTCTATCACTTGATACTCAGCTCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACCAGTGTGATTGTCTTGGGAGTCTATCACTTGATACTCAGCTCT  893

seq1  TAATATTCAATAAATATTAATGATAAATTAATGAAGACGTGTGTGCTCCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTCAATAAATATTAATGATAAATTAATGAAGACGTGTGTGCTCCA  943

seq1  CAGATCTTTCTCCCTTCCTTTCCCCATAACTAGAAGGAGTTAGTGACCCT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTTTCTCCCTTCCTTTCCCCATAACTAGAAGGAGTTAGTGACCCT  993

seq1  GGAACACAAACTTCTCACTGTCTCCTTGACTCAGCGCCATGGGGGCATAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACAAACTTCTCACTGTCTCCTTGACTCAGCGCCATGGGGGCATAG  1043

seq1  GTGCCTGTAATTCACCCATGAAGATGAATTC  1075
      |||||||||||||||||||||||||||||||
seq2  GTGCCTGTAATTCACCCATGAAGATGAATTC  1074


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