BAC Information

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BAC

Clone NameB6Ng01-220L14
Chromosome16 (Build37)
Map Location 88,424,661 - 88,425,746
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486, ORF63, Bach1, LOC100039901, Grik1
Downstream geneEG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220L14.bB6Ng01-220L14.g
ACCGA036211GA036212
length1,0841,177
definitionB6Ng01-220L14.b B6Ng01-220L14.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacttcactacctaggtatccacatacttcagctttatttgattg
catatctaaaccaagagataatagaagcagagggatagggacagagacaa
agtggaaagagggagggagaagaggcaggaaaaggagtgagctggcttcg
gtgtaaatgatctatcactcaaaggtaacatagactgatgagctatgttg
acaagacctgtcagacagagaacctctacaggtagtcatatgaaagatgg
atttcaaaacaagtagctactctcatgtcaagggtagtggaatctttaat
tatataaatggtatcaagaattacattaaaaaacgagaagcataaagact
gctgttcttgatcttctggaaagaatgatgaggcaggaaccgctctatct
ttttgaagaagtgacagtaattccaggagatggaagaagtcctacctgtt
ttccccagaggcgagtaatgatacaaactgtcatctgattcttaatgttt
catggtgtgtgttctctgagaggaataactccactgaatcaccataggaa
atatagctctgtcttcccacctcccaggctggcccctcccacctcccagg
ctggcccctgccccaccatggagttacatttagatgtcttcctctttagg
tattgactacaacaacaagaagatgtaactagtcatcatttttaagagcg
gggccttagaggaacttattcccagcaactaacatgatgcctccatcttc
aacattcccttaagaaattcatttttgtagctgaacttctctgatttgtc
tagttaacagggcttatgattaattgactttaaactatgtttcatgacat
tcgattccatactagacatgaaattccagtcatctaatctgttttgtttt
tgtttttgtttaatttttatattttttgggtttgttttgttttgttttcg
agacagggtttcctctgtataagctctgccagtcctgactcacttttgta
gaccagctggcttcgaactcagaaatcatcttgctctgcctctctaagtg
ctgggaattaaaggtgtgcgcccaccaacgccag
gaattccttgcttgcttgcttatgctctactagatttcttcacagctgta
tacagttcaggacccagtctgtgagaagctgcagcccacactcaggatga
attttcctatataaattgaaaaccaagatcatcctccacaggtataccca
cagagcagtatgggctacaaaagtcctctttgggactctctttccaagtg
attccagggcatataagttgatagataaactaacaagcaacaaatgaacg
tgccaaggtagatggagaaagcaatgcctcgcctcaaccctacacgaaga
actataggcaactgaggacaactgggacctggagaggtagtcttcctgag
aaaagagcacactgtttgtccaatgccaagcagtcagacctgaaagcata
catacaagtaatagtacatgggctgagcgtgttatatttataaaccatgt
acatatacatcatatgcatatacatatgtcatacatatttatacatataa
aaatatacacatatataaagctgtgcatatatattatatgcctatatctg
catgtaataacaagtaatgaattaaagaggaaatgagtttgaaggagagc
agggagagatttagggaagaaaggaaagggagaaatgttacgattacaat
atcaataattaaaaaactatatgtatgcatggagaaaataaaaaagcaca
atatcaaagagagaagagaagggtttttaaactactgaatacaaattgta
ctttgactctgtctttaaacaataattaaaggagtaagcagattatttga
cttcattctttggtgtagattttaaaattgaacttgagtcatcttatctc
ccgagggccaatgcacttcttaacatagtgaaacatggatataagccaat
ggtttactaatgaaacatattttcttgttgtttgctcatgcattatttat
caaaaaaataaatgcacacctctctcactggtctgtttcagggctactta
tccttctcactgatttctgggtattttaatttatatcagtgaatgatgta
agccacatggattcaggtctttgcacacttgtttaaaagcttatcacatt
tatattcagatgtttcacttgtgtttgccagcacctccacgttatataga
attacctcgtgacggagtagatatagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_88424661_88425746
seq2: B6Ng01-220L14.b_51_1134

seq1  GAATTCACTTCACTACCTAGGTATCCACATACTTCAGCTTTATTTGATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCACTACCTAGGTATCCACATACTTCAGCTTTATTTGATTG  50

seq1  CATATCTAAACCAAGAGATAATAGAAGCAGAGGGATAGGGACAGAGACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTAAACCAAGAGATAATAGAAGCAGAGGGATAGGGACAGAGACAA  100

seq1  AGTGGAAAGAGGGAGGGAGAAGAGGCAGGAAAAGGAGTGAGCTGGCTTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAAAGAGGGAGGGAGAAGAGGCAGGAAAAGGAGTGAGCTGGCTTCG  150

seq1  GTGTAAATGATCTATCACTCAAAGGTAACATAGACTGATGAGCTATGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAATGATCTATCACTCAAAGGTAACATAGACTGATGAGCTATGTTG  200

seq1  ACAAGACCTGTCAGACAGAGAACCTCTACAGGTAGTCATATGAAAGATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACCTGTCAGACAGAGAACCTCTACAGGTAGTCATATGAAAGATGG  250

seq1  ATTTCAAAACAAGTAGCTACTCTCATGTCAAGGGTAGTGGAATCTTTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAAACAAGTAGCTACTCTCATGTCAAGGGTAGTGGAATCTTTAAT  300

seq1  TATATAAATGGTATCAAGAATTACATTAAAAAACGAGAAGCATAAAGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAATGGTATCAAGAATTACATTAAAAAACGAGAAGCATAAAGACT  350

seq1  GCTGTTCTTGATCTTCTGGAAAGAATGATGAGGCAGGAACCGCTCTATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTCTTGATCTTCTGGAAAGAATGATGAGGCAGGAACCGCTCTATCT  400

seq1  TTTTGAAGAAGTGACAGTAATTCCAGGAGATGGAAGAAGTCCTACCTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAGAAGTGACAGTAATTCCAGGAGATGGAAGAAGTCCTACCTGTT  450

seq1  TTCCCCAGAGGCGAGTAATGATACAAACTGTCATCTGATTCTTAATGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCAGAGGCGAGTAATGATACAAACTGTCATCTGATTCTTAATGTTT  500

seq1  CATGGTGTGTGTTCTCTGAGAGGAATAACTCCACTGAATCACCATAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGTGTGTTCTCTGAGAGGAATAACTCCACTGAATCACCATAGGAA  550

seq1  ATATAGCTCTGTCTTCCCACCTCCCAGGCTGGCCCCTCCCACCTCCCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGCTCTGTCTTCCCACCTCCCAGGCTGGCCCCTCCCACCTCCCAGG  600

seq1  CTGGCCCCTGCCCCACCATGGAGTTACATTTAGATGTCTTCCTCTTTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCCCTGCCCCACCATGGAGTTACATTTAGATGTCTTCCTCTTTAGG  650

seq1  TATTGACTACAACAACAAGAAGATGTAACTAGTCATCATTTTTAAGAGCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGACTACAACAACAAGAAGATGTAACTAGTCATCATTTTTAAGAGCG  700

seq1  GGGCCTTAGAGGAACTTATTCCCAGCAACTAACATGATGCCTCCATCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTTAGAGGAACTTATTCCCAGCAACTAACATGATGCCTCCATCTTC  750

seq1  AACATTCCCTTAAGAAATTCATTTTTGTAGCTGAACTTCTCTGATTTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCCCTTAAGAAATTCATTTTTGTAGCTGAACTTCTCTGATTTGTC  800

seq1  TAGTTAACAGGGCTTATGATTAATTGACTTTAAACTATGTTTCATGACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAACAGGGCTTATGATTAATTGACTTTAAACTATGTTTCATGACAT  850

seq1  TCGATTCCATACTAGACATGAAATTCCAGTCATCTAATCTTGTTTTTGTT  900
      ||||||||||||||||||||||||||||||||||||||| ||||||   |
seq2  TCGATTCCATACTAGACATGAAATTCCAGTCATCTAATC-TGTTTT--GT  897

seq1  TTTTGTTTTTGTTTTATTTTTTATATTTTTTGGTTTTGTTTTGTTTTGTT  950
      ||||||||||| |||| |||||||||||||||| |||||||||||||| |
seq2  TTTTGTTTTTG-TTTAATTTTTATATTTTTTGGGTTTGTTTTGTTTTG-T  945

seq1  TTTCGAGACAGGGTTT-CTCTGTAT-AGCTCTGCCAGTCCTGGAACTCAC  998
      |||||||||||||||| |||||||| ||||||||||||||||  ||||||
seq2  TTTCGAGACAGGGTTTCCTCTGTATAAGCTCTGCCAGTCCTG--ACTCAC  993

seq1  -TTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCATCTGCCTCTGCCT  1047
       ||||||||||| |||||| |||||||||||||| |||||  ||||||||
seq2  TTTTGTAGACCA-GCTGGCTTCGAACTCAGAAAT-CATCTTGCTCTGCCT  1041

seq1  CCCT-AGTGCTGGG-ATTAAAGGTGTGCG-CCACC-ACGCCCG  1086
      | || ||||||||| |||||||||||||| ||||| ||||| |
seq2  CTCTAAGTGCTGGGAATTAAAGGTGTGCGCCCACCAACGCCAG  1084