BAC Information

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BAC

Clone NameB6Ng01-220M04
Chromosome16 (Build37)
Map Location 10,971,519 - 11,084,478
singlet/doubletdoublet
Overlap geneLOC100043147, LOC100042597, Snn, Txndc11
Upstream geneGrin2a, LOC665291, LOC100042534, 4930517K11Rik, Atf7ip2, Emp2, Tekt5, Nubp1, BC068110, Ciita, LOC669998, Dexi, 4932416N17Rik, Socs1, Tnp2, Prm3, Prm2, Prm1, A630055G03Rik, Litaf
Downstream geneZc3h7a, LOC665450, LOC622271, Rsl1d1, Gspt1, Tnfrsf17, 4933437K13Rik, LOC100043171, C530044N13Rik, 2700045P11Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220M04.bB6Ng01-220M04.g
ACCGA036238GA036239
length4731,146
definitionB6Ng01-220M04.b B6Ng01-220M04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,084,000 - 11,084,478)(10,971,519 - 10,972,668)
sequence
ccagcccagcagaaagtgagggccaacagcaggtgtgagtaaatactgtc
cccttcccacaggacgttctgctgctctattatacacagtggtgtggctt
ttgcccgtctctcaatcacatcttcatccagctagctcggctcctgccag
aggacacatttactgtggccaggtaaggacaccagtctagcatcacgggc
catgctgttcttggttgtttggttttggtgtttgtttgtttgttttgttg
ttgttgttgttgttgttttcacgacaggtttctctggctgtcctagaact
cactctgtagaccaggttggcctcgaactcagaaatccgcctgcctctgc
ctcccaagtgctgggattaaagacgtgccaccactgcctggcctgctgct
cttttaatcttctctgccaacccacccatgctgggtgggctggaagttaa
tgatcataaaaatgcttattgct

gaattcaggacctctggaagagcagatggtgctcttaatcactgagccat
ctctccagccccccaagcctattttttaaaggtgggaaatggagcccaga
ggcttggggggattgcaagaccagctgccgaaacactccaagtcctgctg
ttttcaggagagccagagcagtggttctcagcctgtaggagtcgtgactt
tggagagcagagtgaccttttcacaggggtcaccgaagaccatcagaaaa
cacagatttacagtatgatccaaaacaacagtaaaattgtaattatgaca
tagcaacaaaaataatttcctgattgaggtgtcaccatgacatgaggctg
taacattaggaagtttggtacagtgtccctgctgtggctgccttgaataa
gttttgcatgtttgaacccaggatctgtgttagcttgctgtggaaggttc
tgtgggttaggcaaccaactgcagacaagcaagaacagaactagagtgtg
gaccagctgtgagaataaccctggcctatatcaatctagcactcagaatc
ccagaccccctgcagcagggcctcgatgatctgctttggggaagatggca
acttcagtgatacacaggacaggatgggacaaattgatagccatttgtgg
cctgcaggaccatgtctgggagacacaggctccacccgagcctgctacag
agaaaggtctctcgggcttgttttcattagcacagctccatctatcccag
gcagaataattaaattatgtttaactcaattcattaatttaaatttaact
taatttctgcctaacaagagaaactacaatcaagaactgagattttgctg
ggcagaggtgagtttgagggccacacactatagcaatagttaagactttg
ttttcacagggtcaccctttgtcactcccctagcgcgctcaaggccagca
tgtccctttagccagagagggttctgtcacagatggaccctcccaacaca
aagttaccattcactgatgatctgggcccagttccctccctgcaagccag
gtcctccaagaacagttacagccactgtggttacagatactgcagagcca
ttcgttccactgctctggggaacaggcacaactgagacctggctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_11084000_11084478
seq2: B6Ng01-220M04.b_43_521 (reverse)

seq1  AGCAATAAGCATTTTTATGATCATTAACTTCCAGCCCACCCAGCATGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATAAGCATTTTTATGATCATTAACTTCCAGCCCACCCAGCATGGGT  50

seq1  GGGTTGGCAGAGAGGATTAAAAGAGCAGCAGGCCAGGCAGTGGTGGCACG  100
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGGTTGGCAGAGAAGATTAAAAGAGCAGCAGGCCAGGCAGTGGTGGCACG  100

seq1  TCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCG  150

seq1  AGGCCAACCTGGTCTACAGAGTGAGTTCTAGGACAGCCAGAGAAACCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAACCTGGTCTACAGAGTGAGTTCTAGGACAGCCAGAGAAACCTGT  200

seq1  CGTGAAAACAACAACAACAACAACAACAAAACAAACAAACAAACACCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAAAACAACAACAACAACAACAACAAAACAAACAAACAAACACCAAA  250

seq1  ACCAAACAACCAAGAACAGCATGGCCCGTGATGCTAGACTGGTGTCCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACAACCAAGAACAGCATGGCCCGTGATGCTAGACTGGTGTCCTTA  300

seq1  CCTGGCCACAGTAAATGTGTCCTCTGGCAGGAGCCGAGCTAGCTGGATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCACAGTAAATGTGTCCTCTGGCAGGAGCCGAGCTAGCTGGATGA  350

seq1  AGATGTGATTGAGAGACGGGCAAAAGCCACACCACTGTGTATAATAGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGATTGAGAGACGGGCAAAAGCCACACCACTGTGTATAATAGAGC  400

seq1  AGCAGAACGTCCTGTGGGAAGGGGACAGTATTTACTCACACCTGCTGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAACGTCCTGTGGGAAGGGGACAGTATTTACTCACACCTGCTGTTG  450

seq1  GCCCTCACTTTCTGCTGGGCTGGGAATTC  479
      |||||||||||||||||||||||||||||
seq2  GCCCTCACTTTCTGCTGGGCTGGGAATTC  479


seq1: chr16_10971519_10972668
seq2: B6Ng01-220M04.g_64_1209

seq1  GAATTCAGGACCTCTGGAAGAGCAGATGGTGCTCTTAATCACTGAGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGACCTCTGGAAGAGCAGATGGTGCTCTTAATCACTGAGCCAT  50

seq1  CTCTCCAGCCCCCCAAGCCTATTTTTTAAAGGTGGGAAATGGAGCCCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAGCCCCCCAAGCCTATTTTTTAAAGGTGGGAAATGGAGCCCAGA  100

seq1  GGCTTGGGGGGATTGCAAGACCAGCTGCCGAAACACTCCAAGTCCTGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGGGGGATTGCAAGACCAGCTGCCGAAACACTCCAAGTCCTGCTG  150

seq1  TTTTCAGGAGAGCCAGAGCAGTGGTTCTCAGCCTGTAGGAGTCGTGACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGGAGAGCCAGAGCAGTGGTTCTCAGCCTGTAGGAGTCGTGACTT  200

seq1  TGGAGAGCAGAGTGACCTTTTCACAGGGGTCACCGAAGACCATCAGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGCAGAGTGACCTTTTCACAGGGGTCACCGAAGACCATCAGAAAA  250

seq1  CACAGATTTACAGTATGATCCAAAACAACAGTAAAATTGTAATTATGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATTTACAGTATGATCCAAAACAACAGTAAAATTGTAATTATGACA  300

seq1  TAGCAACAAAAATAATTTCCTGATTGAGGTGTCACCATGACATGAGGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAACAAAAATAATTTCCTGATTGAGGTGTCACCATGACATGAGGCTG  350

seq1  TAACATTAGGAAGTTTGGTACAGTGTCCCTGCTGTGGCTGCCTTGAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTAGGAAGTTTGGTACAGTGTCCCTGCTGTGGCTGCCTTGAATAA  400

seq1  GTTTTGCATGTTTGAACCCAGGATCTGTGTTAGCTTGCTGTGGAAGGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCATGTTTGAACCCAGGATCTGTGTTAGCTTGCTGTGGAAGGTTC  450

seq1  TGTGGGTTAGGCAACCAACTGCAGACAAGCAAGAACAGAACTAGAGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTTAGGCAACCAACTGCAGACAAGCAAGAACAGAACTAGAGTGTG  500

seq1  GACCAGCTGTGAGAATAACCCTGGCCTATATCAATCTAGCACTCAGAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGCTGTGAGAATAACCCTGGCCTATATCAATCTAGCACTCAGAATC  550

seq1  CCAGACCCCCTGCAGCAGGGCCTCGATGATCTGCTTTGGGGAAGATGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCCCCTGCAGCAGGGCCTCGATGATCTGCTTTGGGGAAGATGGCA  600

seq1  ACTTCAGTGATACACAGGACAGGATGGGACAAATTGATAGCCATTTGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGTGATACACAGGACAGGATGGGACAAATTGATAGCCATTTGTGG  650

seq1  CCTGCAGGACCATGTCTGGGAGACACAGGCTCCACCCGAGCCTGCTACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGGACCATGTCTGGGAGACACAGGCTCCACCCGAGCCTGCTACAG  700

seq1  AGAAAGGTCTCTCGGGCTTGTTTTCATTAGCACAGCTCCATCTATCCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGTCTCTCGGGCTTGTTTTCATTAGCACAGCTCCATCTATCCCAG  750

seq1  GCAGAATAATTAAATTATGTTTAACTCAATTCATTAATTTAAATTTAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATAATTAAATTATGTTTAACTCAATTCATTAATTTAAATTTAACT  800

seq1  TAATTTCTGCCTAACAAGAGAAACTACAATCAAGAACTGAGATTTTGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCTGCCTAACAAGAGAAACTACAATCAAGAACTGAGATTTTGCTG  850

seq1  GGCAGAGGTGAGTTTGAGGGCCACACACTATAGCAATAGTTAAGACTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGTGAGTTTGAGGGCCACACACTATAGCAATAGTTAAGACTTTG  900

seq1  TTTTCACAGGGTCACCCTTTGTCACTCCCCTAGCGCGCTCAAGGCCAGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACAGGGTCACCCTTTGTCACTCCCCTAGCGCGCTCAAGGCCAGCA  950

seq1  TGTCCC-TTAGCCAGAGAGGGTTCTTGTCACAGATGGAACCCTCCCAACA  999
      |||||| ||||||||||||||||| |||||||||||| ||||||||||||
seq2  TGTCCCTTTAGCCAGAGAGGGTTC-TGTCACAGATGG-ACCCTCCCAACA  998

seq1  CAAAGTTAACCATTCACTGATGGAATCT-GGCCCAG-TCCCTCCCTGCCA  1047
      ||||||| ||||||||||||||  |||| ||||||| |||||||||||  
seq2  CAAAGTT-ACCATTCACTGATG--ATCTGGGCCCAGTTCCCTCCCTGC--  1043

seq1  AGGCCAGGCCCTCCCAGGACAGTTTACAGCCCACCTGTGGTAACAGATAC  1097
      | |||||| ||||| || |||| ||||||||   ||||||| ||||||||
seq2  AAGCCAGGTCCTCCAAGAACAG-TTACAGCC--ACTGTGGTTACAGATAC  1090

seq1  TGCAGAGCATTCCCGTCCACTGCTCTGGGG-ACAAGCACAACTGAG--CT  1144
      ||||||||  | |  ||||||||||||||| ||| |||||||||||  ||
seq2  TGCAGAGCCATTCGTTCCACTGCTCTGGGGAACAGGCACAACTGAGACCT  1140

seq1  GGCTGG  1150
      ||||||
seq2  GGCTGG  1146


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