BAC Information

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BAC

Clone NameB6Ng01-220N07
Chromosome16 (Build37)8 (Build37)
Map Location 61,275,802 - 61,276,34686,114,239 - 86,115,343
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEpha6, LOC100043804, EG668168, LOC668170, LOC100043524
Downstream geneLOC668183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220N07.bB6Ng01-220N07.g
ACCGA036289GA036290
length1,0521,106
definitionB6Ng01-220N07.b B6Ng01-220N07.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(61,275,802 - 61,276,346)(86,114,239 - 86,115,343)
sequence
gaattcctaatctttccaagacttttatcatgaatgggtgttggatttta
tcaaatgctttctccgcatctaacgagacgctcatgtggtttttgtcttt
gagtttgtttatgtaccagattacattgatggatttctgtatattgaacc
ttccctgcatccctgggatgaaacctacttggtcaggatggatgattgct
ttgatgtgttcttggattcagttagcaagaactttattgagtatttttgc
aacgatattcataagggaaattggtctgaagttctctaactttgttgggt
ctttttgttgtttaggtatcagagtaattgtgggttcatagaatgagttg
ggtagagtaccttctgcttctattttgtggaatagtttgtgcagaactgg
gattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggcttcttttggtttggagactattactgactgcttctatttct
ttaggagatataggactgtttagatcattaacctgatcttgatttaactt
tggtacctggtatctgtctagaaacttgtccatttcatcaaggttctcca
gttttgttgagtatatacttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggatgctttccctgtgccctctagtgagtctggctaaggttttatcta
tcttgttgattttctcaaaaaaccagctcctcgattggttgattatttga
atagttcttcttgtttgcacttgcttgatttcgcccctgagtttgattat
ttcctgccgtctactcatctgggtgaatttgcttccttttgttctagagg
atttacatgtgtgtcaagctgctaattgtgtgctctctctagtttcttct
tggagcaatcagagctatgagtttccctctagaaatgttttcatggtgtc
ccatagttgggtatgttggtggcttcatttgcatgaaactccaaaaggtc
ct

gaattccaggccaccctggtaggatggctcagcaggtaaaggtgtctgct
attgaacctgaagacttggggttagttccttttagttcctggaacgcagg
tggtgaaaggaaagaactcccacaggctgccctctgacttccacttgcat
gcatcagtgtgcatcacaggctgccctctctgacttccacatgcatgcat
cagtgtgcatcacaggctgccctctctgacttccacatgcatgcatcagt
gtgcatcacaggctgccctctctgacttccacatgcatgcatcagtgtgc
atcacaggctgccctctctgacttccacatgcatgcatcagtgtgcatca
caggctgccctctctgacttccacatgcacgcatcagtgtgcgttcaatt
acaataaataaaaatgtaatttttcttgaggtagaatctgtgtagtctgt
gtagctctgcctgaccctgagtggcctggaacttgccttgtagactagtc
tgtatctggccttgaaccaagggatctccctttgtcttcctaagtgctgg
gtttaaaggcgtgtgctaccacaacaggctaaaattttaatttaaataac
aaagtaatagatacctttgaaggactgagtcgatcctttgccctcttgca
cctctgtccactgggaaacctcccgtctcagaagcctcggaggtagtgag
acagttcatcaggtagagatgcgtctttgaggcctacctgaatttgatcc
tttcaccccacaaggtggcaggagagaaccaatttctggaatacaatgaa
ttttaagaaggagaaagactttttgcccataggaagacaccacagatata
atgaagtacagttaattatttttggatgttgtggtgctgagctggaaccc
agggtctttcttgcacaggctaatcaagcaccctgcccccaaagccgcgc
cccccagacttggtgctcaggggctgggagagatgggtcgagaaagaccc
aggttcagttcccaacatcacacattctgtctacccattctgcaacaagc
agttctaggccccagcaccctcttctgtcttgtggcattgcataagctta
agtgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_61275802_61276346
seq2: B6Ng01-220N07.b_561_1102 (reverse)

seq1  AGGACTTTTTGGAGTTTCATGAAAATGAAGCCA-CAACATACCCAAAGTT  49
      ||||| ||||||||||||||| ||||||||||| ||||||||||||   |
seq2  AGGACCTTTTGGAGTTTCATGCAAATGAAGCCACCAACATACCCAA--CT  48

seq1  ATGGGACACAATGAAATCATTTCTAAGAGGAAAACTCATAGTTCTGAGTG  99
      ||||||||| |||||| ||||||| ||||| |||||||||| ||||| ||
seq2  ATGGGACACCATGAAAACATTTCT-AGAGGGAAACTCATAGCTCTGATTG  97

seq1  TCTCCAAAAAGAAACTAGAGAGAGTACAC-ACTATCAACTTGATAACACA  148
       |||||| |||||||||||||||| |||| | || || |||||  |||||
seq2  -CTCCAAGAAGAAACTAGAGAGAGCACACAATTAGCAGCTTGA-CACACA  145

seq1  CCTAAAATCTCTAGAACAAAAGATAGCAAATTCAACCAAGAGGAGTAGAA  198
        ||||  ||||||||||||||  ||||||||| ||| ||| ||||||| 
seq2  TGTAAATCCTCTAGAACAAAAGGAAGCAAATTC-ACCCAGATGAGTAGAC  194

seq1  GGCAGGAAATAATCAAATTCAGGGGCAAAATCAACCAAGTGGAAACAAGA  248
      ||||||||||||||||| |||||||| ||||||| |||||| ||||||||
seq2  GGCAGGAAATAATCAAACTCAGGGGCGAAATCAAGCAAGTGCAAACAAGA  244

seq1  AGAACTATTCAAAGAATCAACCAAATGAGGAGCTGGTTCTTTGAGAAAAT  298
      ||||||||||||| ||||||||||  |||||||||||| |||||||||||
seq2  AGAACTATTCAAATAATCAACCAATCGAGGAGCTGGTTTTTTGAGAAAAT  294

seq1  CAACAAGATAGATAAACCCTTAGCCAGAGTCACGAAAGGGCA-AAGGAAA  347
      |||||||||||||||| ||||||||||| |||| | |||||| | |||||
seq2  CAACAAGATAGATAAAACCTTAGCCAGACTCACTAGAGGGCACAGGGAAA  344

seq1  TCATTCCAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACATAT  397
       ||| | |||||||||||||||||||||||||||||||||||||||| ||
seq2  GCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGAT  394

seq1  TCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTC  447
       ||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  CCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGTATATACTC  444

seq1  AACAAAACTGGAGAACCTAGATGAAATGGACAAGTTTCTAGACAGATACC  497
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AACAAAACTGGAGAACCTTGATGAAATGGACAAGTTTCTAGACAGATACC  494

seq1  AGGTACCAAAGTTAACTCAAGATCAGGTTAATGATCTAAACAGGCCTA  545
      ||||||||||||||| ||||||||||||||||||||||||||| ||||
seq2  AGGTACCAAAGTTAAATCAAGATCAGGTTAATGATCTAAACAGTCCTA  542


seq1: chr8_86114239_86115343
seq2: B6Ng01-220N07.g_67_1172 (reverse)

seq1  TGCACTT-AGCTTATGCAATGCCCACAGGACAGAAGAGGGTGCTGGGGCC  49
      ||||||| ||||||||||||| ||||| |||||||||||||||||||| |
seq2  TGCACTTAAGCTTATGCAATG-CCACAAGACAGAAGAGGGTGCTGGGG-C  48

seq1  CTAGAACTGC-TGTTGCAG-ATGGGTAGACAGAATGTTGGTGATGTTGGG  97
      |||||||||| |||||||| |||||||||||||||||  |||||||||||
seq2  CTAGAACTGCTTGTTGCAGAATGGGTAGACAGAATGT--GTGATGTTGGG  96

seq1  AACTGAACCTGGGTC-TTCTCGACCCATCTCT-CCAGCCCCTGAGCACCA  145
      ||||||||||||||| |||||||||||||||| |||||||||||||||||
seq2  AACTGAACCTGGGTCTTTCTCGACCCATCTCTCCCAGCCCCTGAGCACCA  146

seq1  AGTCTGGGGGGCGCGGCTTTGGGGGCAGGGTGCTTGATTAGCCTGTGCAA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGGGGGCGCGGCTTTGGGGGCAGGGTGCTTGATTAGCCTGTGCAA  196

seq1  GAAAGACCCTGGGTTCCAGCTCAGCACCACAACATCCAAAAATAATTAAC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACCCTGGGTTCCAGCTCAGCACCACAACATCCAAAAATAATTAAC  246

seq1  TGTACTTCATTATATCTGTGGTGTCTTCCTATGGGCAAAAAGTCTTTCTC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTCATTATATCTGTGGTGTCTTCCTATGGGCAAAAAGTCTTTCTC  296

seq1  CTTCTTAAAATTCATTGTATTCCAGAAATTGGTTCTCTCCTGCCACCTTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTAAAATTCATTGTATTCCAGAAATTGGTTCTCTCCTGCCACCTTG  346

seq1  TGGGGTGAAAGGATCAAATTCAGGTAGGCCTCAAAGACGCATCTCTACCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGAAAGGATCAAATTCAGGTAGGCCTCAAAGACGCATCTCTACCT  396

seq1  GATGAACTGTCTCACTACCTCCGAGGCTTCTGAGACGGGAGGTTTCCCAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAACTGTCTCACTACCTCCGAGGCTTCTGAGACGGGAGGTTTCCCAG  446

seq1  TGGACAGAGGTGCAAGAGGGCAAAGGATCGACTCAGTCCTTCAAAGGTAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGAGGTGCAAGAGGGCAAAGGATCGACTCAGTCCTTCAAAGGTAT  496

seq1  CTATTACTTTGTTATTTAAATTAAAATTTTAGCCTGTTGTGGTAGCACAC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTACTTTGTTATTTAAATTAAAATTTTAGCCTGTTGTGGTAGCACAC  546

seq1  GCCTTTAAACCCAGCACTTAGGAAGACAAAGGGAGATCCCTTGGTTCAAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAAACCCAGCACTTAGGAAGACAAAGGGAGATCCCTTGGTTCAAG  596

seq1  GCCAGATACAGACTAGTCTACAAGGCAAGTTCCAGGCCACTCAGGGTCAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGATACAGACTAGTCTACAAGGCAAGTTCCAGGCCACTCAGGGTCAG  646

seq1  GCAGAGCTACACAGACTACACAGATTCTACCTCAAGAAAAATTACATTTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCTACACAGACTACACAGATTCTACCTCAAGAAAAATTACATTTT  696

seq1  TATTTATTGTAATTGAACGCACACTGATGCGTGCATGTGGAAGTCAGAGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTGTAATTGAACGCACACTGATGCGTGCATGTGGAAGTCAGAGA  746

seq1  GGGCAGCCTGTGATGCACACTGATGCATGCATGTGGAAGTCAGAGAGGGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGCCTGTGATGCACACTGATGCATGCATGTGGAAGTCAGAGAGGGC  796

seq1  AGCCTGTGATGCACACTGATGCATGCATGTGGAAGTCAGAGAGGGCAGCC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTGATGCACACTGATGCATGCATGTGGAAGTCAGAGAGGGCAGCC  846

seq1  TGTGATGCACACTGATGCATGCATGTGGAAGTCAGAGAGGGCAGCCTGTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGCACACTGATGCATGCATGTGGAAGTCAGAGAGGGCAGCCTGTG  896

seq1  ATGCACACTGATGCATGCATGTGGAAGTCAGAGAGGGCAGCCTGTGATGC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACACTGATGCATGCATGTGGAAGTCAGAGAGGGCAGCCTGTGATGC  946

seq1  ACACTGATGCATGCAAGTGGAAGTCAGAGGGCAGCCTGTGGGAGTTCTTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGATGCATGCAAGTGGAAGTCAGAGGGCAGCCTGTGGGAGTTCTTT  996

seq1  CCTTTCACCACCTGCGTTCCAGGAACTAAAAGGAACTAACCCCAAGTCTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCACCACCTGCGTTCCAGGAACTAAAAGGAACTAACCCCAAGTCTT  1046

seq1  CAGGTTCAATAGCAGACACCTTTACCTGCTGAGCCATCCTACCAGGGTGG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTCAATAGCAGACACCTTTACCTGCTGAGCCATCCTACCAGGGTGG  1096

seq1  CCTGGAATTC  1105
      ||||||||||
seq2  CCTGGAATTC  1106


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