BAC Information

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BAC

Clone NameB6Ng01-221B07
Chromosome16 (Build37)
Map Location 54,972,110 - 55,135,683
singlet/doubletdoublet
Overlap geneLOC436421
Upstream geneLOC433027, LOC100043442, LOC100043449, LOC667927
Downstream geneZpld1, Nfkbiz, Gm1752, Lrriq2, EG667966, LOC629242, Rpl24, Zbtb11, Pcnp, Rg9mtd1, Senp7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221B07.bB6Ng01-221B07.g
ACCGA036469GA036470
length1,107978
definitionB6Ng01-221B07.b B6Ng01-221B07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,134,566 - 55,135,683)(54,972,110 - 54,973,040)
sequence
ggaattccagaaacttattgatttattgactatagtcactttaaaaaaat
ctatagtccaaaggctaataatgaaaaaatgtagggacggtaaatatgag
gtttaaataaagtatatgtttgcccatggtgcttgaatttttatgctaat
atacttttgtcttagatattcttgcacagattttccactatttgagaatt
tatgtagaacaacagggcagtacatattgtttaatggaaatattgtattg
tagctttctggttagcagtaatgggagctttctctttggagtgttttaag
gcctacttaattaggtcacctttgggcaaattgtatttcagacaaattga
aaggcatttaaattctttcagatcacctgaatagcattcagtgtcctggt
atgttaatttgccaactggaacctctgggaatggagctaattaagtctat
aaataaagcaaataagcaaatatctgggagggagtgtattctacagttgt
gtaatgtctttgagttggtttgtgaaatgtgatagaaattatttaccaaa
gcaatttttcttgtaattttaaaacattttttttttggctaaaatgtgat
tccatattcttctcagtggagacctcataggttaaaaagtcattaaatga
aacatttttttcttttatgttgtaaagttataaaatgtcgaatatgacat
tctgaattaaatggtagctagatgcattattttggagtggtagatatcca
tttgtataaagccttttgtctctgtactctggtgagagaccatggcagta
tgccttgtggaagtacttgttctgtatttgatccatggaaatctatggtc
ttccacttgctcagacccctcttctcatggggaaacaggctcccatcctt
ctaaatcacaaaatgtgtcattagtgtctagttcccagctatggattcca
tgtctcaatctactctaattacatcactgctccaattccccgtttactgt
tacttgtaacagatcagaaaaaaatcttttcatatgtgtgatcacttcaa
tgcatgatgtagaagaagctactttagttaagttggattcagtgaataat
tcactgg

gaattcctaataggagaaagagcagaatgcagtacagttactcgtgattt
agtggatcattagaagagtaggtgggccatgtgatagttgatgacaaagt
tggcttgtatgtgaagccaacttcaaagctcctttcctgtgatgcagcag
gattcccagatgacaaaactcaaggagaaagttcacgacaactggggaat
atcttttaatgcttctatctttgaaaggaaaggtgagtcagaggaagcct
tgacttgtacttgttaagtaccttttacacaaaataatatgtgtaccaaa
gtattatattttggaattctttatattgttttccttcaaataaaaggaaa
tgttatgaaacaaaatattactaatgagaaaaaattgaaaacaatatgga
tttgaattaataatgtgtttataggaagtatcctatgctcgcttcagcat
cacatatactaaaattggaacaatacagagaagattagcatggcccctgc
acaaggatgacatgtaaattcatgaagtattccatatttttccaagtcca
taaaggcagacttatcagtattacaatggacttctcaccagagactatgg
aagctagaagatcctgggcagatgtcatacataccctaagagaacacaaa
tgtcagcccagactactatacccagcaaaactctcaattaccatagatgg
agaaaaccagttatttccatgagaaaaaacaaatgtacacaatatctctc
cactaattcagccctacaaaagataatagatggaaaactccaacacaaga
agggaagccacaccctaaaaaagcaagaaagtaatcttctttcaacaaac
caaaaagaagataaccacaaaaaaaacccataattccaccgataacacag
aagtaacaggaagcacaatcagttttcctttaatatctcttatatcaatg
gactcagtttcctaataaaagaactaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_55134566_55135683
seq2: B6Ng01-221B07.b_47_1152 (reverse)

seq1  CCAGTGAATAATTTCACTGAATCCAACTTAAACTAAAAGTTGCTTTCTCT  50
      ||||||||| | ||||||||||||||||| |||| ||||| ||||  |||
seq2  CCAGTGAATTA-TTCACTGAATCCAACTT-AACT-AAAGTAGCTTCTTCT  47

seq1  TAACATTCATACATTTGAGTGATCACACATTATGAAAAGATTTTTTTTCT  100
        ||| |||| ||||  |||||||||||| |||||||||| |||||||||
seq2  --ACA-TCATGCATTGAAGTGATCACACA-TATGAAAAGA-TTTTTTTCT  92

seq1  GATCCTGTTACAAAGTAACAGTTATACGGGGAATTGGAGCAGTGATGTAA  150
      ||| ||||||| ||||||||| || |||||||||||||||||||||||||
seq2  GAT-CTGTTAC-AAGTAACAG-TAAACGGGGAATTGGAGCAGTGATGTAA  139

seq1  TTAGAGTAGATTGAGACATGGAATCCATAGCTGGGAACTAGACACTAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGTAGATTGAGACATGGAATCCATAGCTGGGAACTAGACACTAATG  189

seq1  AACACATTTTGTGATTTAGAAGGATGGGAGCCTGTTTCCCCATGAGAAGA  250
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -ACACATTTTGTGATTTAGAAGGATGGGAGCCTGTTTCCCCATGAGAAGA  238

seq1  GGGGTCTGAGCAAGTGGAAGACCATAGATTTCCATGGATCAAATACAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCTGAGCAAGTGGAAGACCATAGATTTCCATGGATCAAATACAGAA  288

seq1  CAAGTACTTCCACAAGGCATACTGCCATGGTCTCTCACCAGAGTACAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTACTTCCACAAGGCATACTGCCATGGTCTCTCACCAGAGTACAGAG  338

seq1  ACAAAAGGCTTTATACAAATGGATATCTACCACTCCAAAATAATGCATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGGCTTTATACAAATGGATATCTACCACTCCAAAATAATGCATCT  388

seq1  AGCTACCATTTAATTCAGAATGTCATATTCGACATTTTATAACTTTACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACCATTTAATTCAGAATGTCATATTCGACATTTTATAACTTTACAA  438

seq1  CATAAAAGAAAAAAATGTTTCATTTAATGACTTTTTAACCTATGAGGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAGAAAAAAATGTTTCATTTAATGACTTTTTAACCTATGAGGTCT  488

seq1  CCACTGAGAAGAATATGGAATCACATTTTAGCCAAAAAAAAAATGTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAGAAGAATATGGAATCACATTTTAGCCAAAAAAAAAATGTTTTA  538

seq1  AAATTACAAGAAAAATTGCTTTGGTAAATAATTTCTATCACATTTCACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACAAGAAAAATTGCTTTGGTAAATAATTTCTATCACATTTCACAA  588

seq1  ACCAACTCAAAGACATTACACAACTGTAGAATACACTCCCTCCCAGATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACTCAAAGACATTACACAACTGTAGAATACACTCCCTCCCAGATAT  638

seq1  TTGCTTATTTGCTTTATTTATAGACTTAATTAGCTCCATTCCCAGAGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTATTTGCTTTATTTATAGACTTAATTAGCTCCATTCCCAGAGGTT  688

seq1  CCAGTTGGCAAATTAACATACCAGGACACTGAATGCTATTCAGGTGATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTGGCAAATTAACATACCAGGACACTGAATGCTATTCAGGTGATCT  738

seq1  GAAAGAATTTAAATGCCTTTCAATTTGTCTGAAATACAATTTGCCCAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAATTTAAATGCCTTTCAATTTGTCTGAAATACAATTTGCCCAAAG  788

seq1  GTGACCTAATTAAGTAGGCCTTAAAACACTCCAAAGAGAAAGCTCCCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCTAATTAAGTAGGCCTTAAAACACTCCAAAGAGAAAGCTCCCATT  838

seq1  ACTGCTAACCAGAAAGCTACAATACAATATTTCCATTAAACAATATGTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTAACCAGAAAGCTACAATACAATATTTCCATTAAACAATATGTAC  888

seq1  TGCCCTGTTGTTCTACATAAATTCTCAAATAGTGGAAAATCTGTGCAAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGTTGTTCTACATAAATTCTCAAATAGTGGAAAATCTGTGCAAGA  938

seq1  ATATCTAAGACAAAAGTATATTAGCATAAAAATTCAAGCACCATGGGCAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTAAGACAAAAGTATATTAGCATAAAAATTCAAGCACCATGGGCAA  988

seq1  ACATATACTTTATTTAAACCTCATATTTACCGTCCCTACATTTTTTCATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATACTTTATTTAAACCTCATATTTACCGTCCCTACATTTTTTCATT  1038

seq1  ATTAGCCTTTGGACTATAGATTTTTTTAAAGTGACTATAGTCAATAAATC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCCTTTGGACTATAGATTTTTTTAAAGTGACTATAGTCAATAAATC  1088

seq1  AATAAGTTTCTGGAATTC  1118
      ||||||||||||||||||
seq2  AATAAGTTTCTGGAATTC  1106


seq1: chr16_54972110_54973040
seq2: B6Ng01-221B07.g_68_997

seq1  GAATTCCTAATAGGAGAAAGAGCAGAATGCAGTACAGTTACTCGTGATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAATAGGAGAAAGAGCAGAATGCAGTACAGTTACTCGTGATTT  50

seq1  AGTGGATCATTAGAAGAGTAGGTGGGCCATGTGATAGTTGATGACAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGATCATTAGAAGAGTAGGTGGGCCATGTGATAGTTGATGACAAAGT  100

seq1  TGGCTTGTATGTGAAGCCAACTTCAAAGCTCCTTTCCTGTGATGCAGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGTATGTGAAGCCAACTTCAAAGCTCCTTTCCTGTGATGCAGCAG  150

seq1  GATTCCCAGATGACAAAACTCAAGGAGAAAGTTCACGACAACTGGGGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCCAGATGACAAAACTCAAGGAGAAAGTTCACGACAACTGGGGAAT  200

seq1  ATCTTTTAATGCTTCTATCTTTGAAAGGAAAGGTGAGTCAGAGGAAGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTAATGCTTCTATCTTTGAAAGGAAAGGTGAGTCAGAGGAAGCCT  250

seq1  TGACTTGTACTTGTTAAGTACCTTTTACACAAAATAATATGTGTACCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGTACTTGTTAAGTACCTTTTACACAAAATAATATGTGTACCAAA  300

seq1  GTATTATATTTTGGAATTCTTTATATTGTTTTCCTTCAAATAAAAGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATATTTTGGAATTCTTTATATTGTTTTCCTTCAAATAAAAGGAAA  350

seq1  TGTTATGAAACAAAATATTACTAATGAGAAAAAATTGAAAACAATATGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGAAACAAAATATTACTAATGAGAAAAAATTGAAAACAATATGGA  400

seq1  TTTGAATTAATAATGTGTTTATAGGAAGTATCCTATGCTCGCTTCAGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATTAATAATGTGTTTATAGGAAGTATCCTATGCTCGCTTCAGCAT  450

seq1  CACATATACTAAAATTGGAACAATACAGAGAAGATTAGCATGGCCCCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATACTAAAATTGGAACAATACAGAGAAGATTAGCATGGCCCCTGC  500

seq1  ACAAGGATGACATGTAAATTCATGAAGTATTCCATATTTTTCCAAGTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGATGACATGTAAATTCATGAAGTATTCCATATTTTTCCAAGTCCA  550

seq1  TAAAGGCAGACTTATCAGTATTACAATGGACTTCTCACCAGAGACTATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCAGACTTATCAGTATTACAATGGACTTCTCACCAGAGACTATGG  600

seq1  AAGCTAGAAGATCCTGGGCAGATGTCATACATACCCTAAGAGAACACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGAAGATCCTGGGCAGATGTCATACATACCCTAAGAGAACACAAA  650

seq1  TGTCAGCCCAGACTACTATACCCAGCAAAACTCTCAATTACCATAGATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCCCAGACTACTATACCCAGCAAAACTCTCAATTACCATAGATGG  700

seq1  AGAAAACCAGTTA-TTCCATGAG-AAAAACAAATGTACACAATATCTCTC  748
      ||||||||||||| ||||||||| ||||||||||||||||||||||||||
seq2  AGAAAACCAGTTATTTCCATGAGAAAAAACAAATGTACACAATATCTCTC  750

seq1  CACTAATTCAGCCCTACAAAAGATAATAGATGGAAAACTCCAACACAAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAATTCAGCCCTACAAAAGATAATAGATGGAAAACTCCAACACAAGA  800

seq1  AGGGAAGCCACACCCTAAAAAAAGCAAGAAAGTAATCTTCTTTCAACAAA  848
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGGGAAGCCACACCCT-AAAAAAGCAAGAAAGTAATCTTCTTTCAACAAA  849

seq1  CCAAAAAGAAGATAACCACAAAAAAAACCCATAATTCCACCGATAACAAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCAAAAAGAAGATAACCACAAAAAAAACCCATAATTCCACCGATAAC-AC  898

seq1  AGAAGTAACAGGAAGCAACAATCAGTTTTCCTT  931
      |||||||||||||||| ||||||||||||||||
seq2  AGAAGTAACAGGAAGC-ACAATCAGTTTTCCTT  930


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