BAC Information

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BAC

Clone NameB6Ng01-221D22
Chromosome7 (Build37)16 (Build37)
Map Location 58,007,775 - 58,008,33663,441,961 - 63,442,506
singlet/doubletsingletsinglet
Overlap geneNell1
Upstream geneHtatip2, Prmt3, Slc6a5, 4933405O20Rik
Downstream geneEG668766, EG668767, EG668768, EG638046, EG668770, EG668774, LOC668776, LOC434186, LOC546971, LOC668779, Tmem16e, Slc17a6, EG620599, LOC654473
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221D22.bB6Ng01-221D22.g
ACCGA036587GA036588
length1,016831
definitionB6Ng01-221D22.b B6Ng01-221D22.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(58,007,775 - 58,008,336)(63,441,961 - 63,442,506)
sequence
gaattctcctttattacctgataaattttattgaaaaacatacttaagaa
ttctcctctatcatctggaataacaaaaaacagaggatagcaaaaactct
tctcaaggataaaagaacctctggtggaatcaccatgccggacctaaaac
tgtactacagagcaattgtggtcaaaactgcatggtactggtatagtgac
agacaagtagaccaatggaacagaattgaagacccagagatgaatccaca
cacctatggtcacttgatctttgacaagggagctataatcatccagtgga
aaaaagaaagcattttcaacaaatggtgctggcacaactggcggttatca
tgtagaataatgcgaattgatccatttctatctccttgtactaaggtcaa
atctaagtggattaaggaactccacataaaaccagagacactgaaactta
tagcggagaaagtagggaaaagcctcgaagatatgggtacaggggaaaaa
ttcctgaatagaacggcaatggcttgtgctgtaagatcaagaatcgataa
atgggacctcataaaattgcaaagcttctgcaaagcaaaagacaccgtca
ataagacaaaaaggccaccaacagattgggaaaggatctttacctatccc
aaatctgataggggactaatatccaatatatatataaagaactcaagaag
gtggactccagaaaatcaaataaccccattaaaaaatggggctcagagct
gaacaaagaattctcacctgaggaataccgaatggcagagaagcacctga
aaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaac
actgagattccacttcactccagtcagaatggctaagatcaaaaactcag
gtgacagcagatgctgggcaaggatgtgggagaaaggggaacactcctcc
cattgtgggtgggattgcaagcttgtacaaccactctgggaaatcagtct
ggctggtttcctcaga
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaaggatctgatggtgttttggat
ttcttcaggatctgttgttatgtctccctttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgatttctcaaagaaccaacccctcgttttggttaattctttga
attagttctcttgtttccacttgttgatttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_58007775_58008336
seq2: B6Ng01-221D22.b_44_605

seq1  GAATTCTCCTTTATTACCTGATAAATTTTATTGAAAAACATACTTAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTTATTACCTGATAAATTTTATTGAAAAACATACTTAAGAA  50

seq1  TTCTCCTCTATCATCTGGAATAACAAAAAACAGAGGATAGCAAAAACTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTCTATCATCTGGAATAACAAAAAACAGAGGATAGCAAAAACTCT  100

seq1  TCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCGGACCTAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCGGACCTAAAAC  150

seq1  TGTACTACAGAGCAATTGTGGTCAAAACTGCATGGTACTGGTATAGTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTACAGAGCAATTGTGGTCAAAACTGCATGGTACTGGTATAGTGAC  200

seq1  AGACAAGTAGACCAATGGAACAGAATTGAAGACCCAGAGATGAATCCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGTAGACCAATGGAACAGAATTGAAGACCCAGAGATGAATCCACA  250

seq1  CACCTATGGTCACTTGATCTTTGACAAGGGAGCTATAATCATCCAGTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTATGGTCACTTGATCTTTGACAAGGGAGCTATAATCATCCAGTGGA  300

seq1  AAAAAGAAAGCATTTTCAACAAATGGTGCTGGCACAACTGGCGGTTATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAAGCATTTTCAACAAATGGTGCTGGCACAACTGGCGGTTATCA  350

seq1  TGTAGAATAATGCGAATTGATCCATTTCTATCTCCTTGTACTAAGGTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAATAATGCGAATTGATCCATTTCTATCTCCTTGTACTAAGGTCAA  400

seq1  ATCTAAGTGGATTAAGGAACTCCACATAAAACCAGAGACACTGAAACTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGTGGATTAAGGAACTCCACATAAAACCAGAGACACTGAAACTTA  450

seq1  TAGCGGAGAAAGTAGGGAAAAGCCTCGAAGATATGGGTACAGGGGAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGGAGAAAGTAGGGAAAAGCCTCGAAGATATGGGTACAGGGGAAAAA  500

seq1  TTCCTGAATAGAACGGCAATGGCTTGTGCTGTAAGATCAAGAATCGATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAATAGAACGGCAATGGCTTGTGCTGTAAGATCAAGAATCGATAA  550

seq1  ATGGGACCTCAT  562
      ||||||||||||
seq2  ATGGGACCTCAT  562

seq1: chr16_63441961_63442506
seq2: B6Ng01-221D22.g_350_894 (reverse)

seq1  GAAATCAACCAAGTGGAAACAAGAAGAACT-ATTCAAAGAATTAACC-AA  48
      |||||||| |||||||||||||| |||||| |||||||||||||||| ||
seq2  GAAATCAA-CAAGTGGAAACAAG-AGAACTAATTCAAAGAATTAACCAAA  48

seq1  ACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGC  98
      |||||| |||||||||||||| ||||||||||||||||||||||||||||
seq2  ACGAGGGGTTGGTTCTTTGAG-AAATCAACAAGATAGATAAACCCTTAGC  97

seq1  TAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAA  147

seq1  ATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATC  198
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATG-AAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATC  196

seq1  AGATCC-TTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACG  247
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCTTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACG  246

seq1  AAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGAT  296

seq1  CAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGT  346

seq1  TATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGATGGGTTTAGTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGATGGGTTTAGTG  396

seq1  CAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAA  446

seq1  CTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGA  496

seq1  AGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATA  546
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATA  545