BAC Information

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BAC

Clone NameB6Ng01-221H12
Chromosome16 (Build37)
Map Location 79,915,100 - 80,025,898
singlet/doubletdoublet
Overlap geneEG383172, 1700066C05Rik
Upstream geneChodl, Prss7
Downstream geneLOC621365, LOC100039724
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221H12.bB6Ng01-221H12.g
ACCGA036755GA036756
length7661,104
definitionB6Ng01-221H12.b B6Ng01-221H12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,915,100 - 79,915,676)(80,024,801 - 80,025,898)
sequence
gaattcctgctggttaacatagtaacttcaggcatcgtgtggcctccacg
ctgaatatggctcttctttttttcttttttttttttctttccatttttat
taggtatttagctcatttacatttccaatgctataccaaaagtcccccat
acccacccatccccactcccctacccgcccactccccctttttggccctg
gcgttcccctgttctggagcatataaagtttgtgtgtccaatgggcctct
ctttccagtgatggccgactaggccatcttttgatacatatgcagctaga
gtcaagagctccggggtactggttagttcataatgttgttccacctatag
ggttgcagatccctttagctccttgggtactttctctagctcctccattg
ggagccctgtgatccatccattagctgactgtgggcatccacttctgtgt
ttgctaggccccggcatagtctcacaagagagagctacatctgggtcctt
tcgataaaatcttgctagtgtatgcaatggtgtcagcgtttggatgctga
ttatggggtggatccctggataaggcagtctctacatggtccatcctttc
atctcagctccaaacttttgtctctgtaactccttccaagggtgttttgt
tcccacttctaaggaggggcatagtgtccacacttcagtcttcatttttc
ttgagttttcatgtgtttaggaaattgtatcttatattctttgtgtatcc
taggtttttgggctaa
gaattcctgctagatagttcattatttaaaaatggatattctggaactaa
aaagatagttcaatgaggaagagcttttactgttcttctcgacttgagtt
atgtcctagcaacacgtttcatggtctaccactccctgtctctccaatgg
cacagaatcatatgtatttatcaggtcttcactggtacaatcccacactt
ggtgcatgtacacgtgcacacaaacacaataaataattggtaaaataaaa
caaaagtttcacattatatatttaaaaatatattacttggtaagatttta
aaatcttatttccatttagatctttgtaaattgtatgacatgcttctaaa
agtttgatttttatataatacctatagtagctttttttaatctagatttg
atcatgatttcagacatgttcagctcaggaaggttgggcttaagtggtga
catgcacaagtatttcaacttcttttgcctgtactagcagagatattatt
gaatattattgtgatatttatttatcagattccatgttgaaagccagtga
ttatatatttaagtgtaaaggaatacttacacagggctgtaccccttcat
taaccaggatttcttcttctctcattagcaacaggatttggagcttttac
catcttgctgtgtgagattctatattcccatatgagccatgacttggttc
atccagggatgtctgaattaaatatttgttctatatgtatatatgagatt
tctcagcatctaagacaatgggaccgtgaagagggagcaaggtggtaaag
aaaagagaaactcaacattttcacttcctgcctgaacttgaccttagact
tctcatctcattttccttctctcacgttggtgttgctagctaaaattcac
tgcctctctgatttttagccttatgccaaccaaataccatacttcaaact
tctcagggtgtttcctttgtatactgcacttctataggacgttaatcagt
ttctttaagatatctttttttcctctaattctgggcataaaatattttta
tatttgattttgttaggaatttgaagtttgcttttgtgtcattctccatt
gcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_79915100_79915676
seq2: B6Ng01-221H12.b_46_622

seq1  GAATTCCTGCTGGTTAACATAGTAACTTCAGGCATCGTGTGGCCTCCACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCTGGTTAACATAGTAACTTCAGGCATCGTGTGGCCTCCACG  50

seq1  CTGAATATGGCTCTTCTTTTTTTCTTTTTTTTTTTTCTTTCCATTTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATATGGCTCTTCTTTTTTTCTTTTTTTTTTTTCTTTCCATTTTTAT  100

seq1  TAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCAT  150

seq1  ACCCACCCATCCCCACTCCCCTACCCGCCCACTCCCCCTTTTTGGCCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCCATCCCCACTCCCCTACCCGCCCACTCCCCCTTTTTGGCCCTG  200

seq1  GCGTTCCCCTGTTCTGGAGCATATAAAGTTTGTGTGTCCAATGGGCCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTCCCCTGTTCTGGAGCATATAAAGTTTGTGTGTCCAATGGGCCTCT  250

seq1  CTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGA  300

seq1  GTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAG  350

seq1  GGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTG  400

seq1  GGAGCCCTGTGATCCATCCATTAGCTGACTGTGGGCATCCACTTCTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCCTGTGATCCATCCATTAGCTGACTGTGGGCATCCACTTCTGTGT  450

seq1  TTGCTAGGCCCCGGCATAGTCTCACAAGAGAGAGCTACATCTGGGTCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAGGCCCCGGCATAGTCTCACAAGAGAGAGCTACATCTGGGTCCTT  500

seq1  TCGATAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGATGCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGATGCTGA  550

seq1  TTATGGGGTGGATCCCTGGATAAGGCA  577
      |||||||||||||||||||||||||||
seq2  TTATGGGGTGGATCCCTGGATAAGGCA  577

seq1: chr16_80024801_80025898
seq2: B6Ng01-221H12.g_62_1165 (reverse)

seq1  TAGCAA-GGAGAATGGACAACAAAAAC-AACTTCAAATTCATAAACAAAA  48
      |||||| ||||||| ||| |||||| | |||||||||||| | |||||||
seq2  TAGCAATGGAGAAT-GAC-ACAAAAGCAAACTTCAAATTCCT-AACAAAA  47

seq1  TCAAAATATAAAAATATATTATGCACAGAATTAGAG--AAAAAAGATATC  96
      || |||||||||||||| |||||| |||||||||||  ||||||||||||
seq2  TC-AAATATAAAAATATTTTATGCCCAGAATTAGAGGAAAAAAAGATATC  96

seq1  TTAAAGAAACTGA-TAACGT-CTATAG-AGTGCAGTATAC-AAGGAAACA  142
      ||||||||||||| |||||| |||||| |||||||||||| |||||||||
seq2  TTAAAGAAACTGATTAACGTCCTATAGAAGTGCAGTATACAAAGGAAACA  146

seq1  CCCTGAGAAGTTTGAAGTATGGTATTTGGTTGGCAT-AGGCTAAAAATCA  191
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCCTGAGAAGTTTGAAGTATGGTATTTGGTTGGCATAAGGCTAAAAATCA  196

seq1  GAGAGGCAGTGAATTTTTAGCTAGCAACACCAACGTGAGAGAAGG-AAAT  240
      ||||||||||||| ||||||||||||||||||||||||||||||| ||||
seq2  GAGAGGCAGTGAA-TTTTAGCTAGCAACACCAACGTGAGAGAAGGAAAAT  245

seq1  GAGATGAGAAGTCTAAGGTCAAGTTCAGGCAGGAAGTGAAAATGTTGAGT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGAGAAGTCTAAGGTCAAGTTCAGGCAGGAAGTGAAAATGTTGAGT  295

seq1  TTCTCTTTTCTTTACCACCTTGCTCCCTCTTCACGGT-CCATTGTCTTAG  339
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTCTCTTTTCTTTACCACCTTGCTCCCTCTTCACGGTCCCATTGTCTTAG  345

seq1  ATGCTGAGAAATCTCATATATACATATAGAACAAATATTTAATTCAGACA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGAGAAATCTCATATATACATATAGAACAAATATTTAATTCAGACA  395

seq1  TCCCTGGATGAACCAAGTCATGGCTCATATGGGAATATAGAATCTCACAC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGATGAACCAAGTCATGGCTCATATGGGAATATAGAATCTCACAC  445

seq1  AGCAAGATGGTAAAAGCTCCAAATCCTGTTGCTAATGAGAGAAGAAGAAA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGATGGTAAAAGCTCCAAATCCTGTTGCTAATGAGAGAAGAAGAAA  495

seq1  TCCTGGTTAATGAAGGGGTACAGCCCTGTGTAAGTATTCCTTTACACTTA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTTAATGAAGGGGTACAGCCCTGTGTAAGTATTCCTTTACACTTA  545

seq1  AATATATAATCACTGGCTTTCAACATGGAATCTGATAAATAAATATCACA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATAATCACTGGCTTTCAACATGGAATCTGATAAATAAATATCACA  595

seq1  ATAATATTCAATAATATCTCTGCTAGTACAGGCAAAAGAAGTTGAAATAC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATTCAATAATATCTCTGCTAGTACAGGCAAAAGAAGTTGAAATAC  645

seq1  TTGTGCATGTCACCACTTAAGCCCAACCTTCCTGAGCTGAACATGTCTGA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCATGTCACCACTTAAGCCCAACCTTCCTGAGCTGAACATGTCTGA  695

seq1  AATCATGATCAAATCTAGATTAAAAAAAGCTACTATAGGTATTATATAAA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGATCAAATCTAGATTAAAAAAAGCTACTATAGGTATTATATAAA  745

seq1  AATCAAACTTTTAGAAGCATGTCATACAATTTACAAAGATCTAAATGGAA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAACTTTTAGAAGCATGTCATACAATTTACAAAGATCTAAATGGAA  795

seq1  ATAAGATTTTAAAATCTTACCAAGTAATATATTTTTAAATATATAATGTG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATTTTAAAATCTTACCAAGTAATATATTTTTAAATATATAATGTG  845

seq1  AAACTTTTGTTTTATTTTACCAATTATTTATTGTGTTTGTGTGCACGTGT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTTGTTTTATTTTACCAATTATTTATTGTGTTTGTGTGCACGTGT  895

seq1  ACATGCACCAAGTGTGGGATTGTACCAGTGAAGACCTGATAAATACATAT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCACCAAGTGTGGGATTGTACCAGTGAAGACCTGATAAATACATAT  945

seq1  GATTCTGTGCCATTGGAGAGACAGGGAGTGGTAGACCATGAAACGTGTTG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGTGCCATTGGAGAGACAGGGAGTGGTAGACCATGAAACGTGTTG  995

seq1  CTAGGACATAACTCAAGTCGAGAAGAACAGTAAAAGCTCTTCCTCATTGA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGACATAACTCAAGTCGAGAAGAACAGTAAAAGCTCTTCCTCATTGA  1045

seq1  ACTATCTTTTTAGTTCCAGAATATCCATTTTTAAATAATGAACTATCTAG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTTTTTAGTTCCAGAATATCCATTTTTAAATAATGAACTATCTAG  1095

seq1  CAGGAATTC  1098
      |||||||||
seq2  CAGGAATTC  1104