BAC Information

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BAC

Clone NameB6Ng01-221M13
Chromosome16 (Build37)
Map Location 60,549,604 - 60,550,592
singlet/doubletsinglet
Overlap geneEpha6
Upstream geneBC043118, LOC672884, Arl6, LOC100043804
Downstream geneEG668168, LOC668170, LOC100043524, LOC668183
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221M13.bB6Ng01-221M13.g
ACCGA036978GA036979
length1,1611,034
definitionB6Ng01-221M13.b B6Ng01-221M13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgccagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
gaattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccagaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcccaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatatactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacaggctcccaa
tggaggagctagagaaagtacccaaggagctaaagggatcttcaacccta
taggtggacacattatgactaccagtacccctgagctcttgactctagct
gcatatgtatcaaaagatggcttagtcgcatcacttggaaagagaggcca
ttggaaccgcagacttgtgtgccagtacaggaacgcaaggctaaagagaa
ttagcgtgtta

gaattcatataaaagctcactcagggagaaactctagaaaggacatcatt
ctgtacagtttcaaatgaaacccgaagtgttaaaccaataggatccctat
atttaacttcagcgatcgtgctgacttcctaggtcttttaaaataatttt
aaatgcagtttcatgtttcttttcttagcttttcttcaacctaagtggcc
ataatgcatcagctatttttgtgcatgtgttaagagcatcctctgggcta
gagatgaaattcagaggatggagaccttgccttatatgaacaaagacttg
gatgtgaatagaagcactgcacaagctgtgtgtgctggtatctgcctgtc
atcttgggctccagaagtgaaacctggagattaacacatttgacagacca
gcctaggatacaagataaaagataaaattcctgcctatttatttatttat
tttggatagatacacccaattatccatatatttgtttctttatatttgaa
ttggagtagaatttatactaagtttagtgttttattcacacatatacata
tgcatatacatacatgggtatatataatatactcataaatatattctatg
tatatgtatatatatatgtgtgtatatatacatatacatattacatatac
atatacatatacatatacattacatatacatatacatatacatatacata
tatatatgcatgttatatggtacatcatcttgattttccctacataccca
ttaaaagtttattttcctccaatagttgaagctcctgaatcatgattttc
tgtcaatagctgttctctccacataggaccaaagatcttaagattattac
tgtgtttttcataagtgagggaaccctctgctccctttattttcctgttg
gcacaatcctgattataaaagtataaaagcacttttttattattttattt
gctattagatcaatgggatttttaatcatattgggccagagcttaccccc
ttctccaaaagtggcttcctcctaagccctttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_60549604_60550592
seq2: B6Ng01-221M13.g_65_1073 (reverse)

seq1  TTTGGAGAAGGGG--TAGCTCTGGCC--ATATGATTAAAA--TCCATTGA  44
      |||||||||||||   ||||||||||  ||||||||||||   |||||||
seq2  TTTGGAGAAGGGGGTAAGCTCTGGCCCAATATGATTAAAAATCCCATTGA  50

seq1  TCTAATAGCAA--TAAATAAT--AAAAGTGC-TTTATACTTTTAT-ATCA  88
      |||||||||||   |||||||  |||||||| ||||||||||||| ||||
seq2  TCTAATAGCAAATAAAATAATAAAAAAGTGCTTTTATACTTTTATAATCA  100

seq1  -GATTGTGCC-ACAGG-AAATTAAGGGAGCAGAGGGTTCCCTCACTTATG  135
       ||||||||| ||||| |||| ||||||||||||||||||||||||||||
seq2  GGATTGTGCCAACAGGAAAATAAAGGGAGCAGAGGGTTCCCTCACTTATG  150

seq1  -AAAACACAGTAATAATCTTAAGATC-TTGGTCCTATGTGGAGAGAACAG  183
       ||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAAAACACAGTAATAATCTTAAGATCTTTGGTCCTATGTGGAGAGAACAG  200

seq1  CTATTGACAGAAAATCATGATTCAGGAGCTTCAACTATTGGAGGAAAATA  233
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGACAGAAAATCATGATTCAGGAGCTTCAACTATTGGAGGAAAATA  250

seq1  AAC-TTTAATGGGTATGTAGGGAAAATCAAGATGATGTACCATAT-ACAT  281
      ||| ||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AACTTTTAATGGGTATGTAGGGAAAATCAAGATGATGTACCATATAACAT  300

seq1  GCATATATATATGTATATGTATATGTATATGTATATGTAATGTATATGTA  331
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATATATATGTATATGTATATGTATATGTATATGTAATGTATATGTA  350

seq1  TATGTATATGTATATGT-ATATGTATATGTATATATACACACATATATAT  380
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TATGTATATGTATATGTAATATGTATATGTATATATACACACATATATAT  400

seq1  ATACATATACATAGAATATATTTATGAGTATATTATATATACCCATGTAT  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATACATAGAATATATTTATGAGTATATTATATATACCCATGTAT  450

seq1  GTATATGCATATGTATATGTGTGAATAAAACACTAAACTTAGTATAAATT  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGCATATGTATATGTGTGAATAAAACACTAAACTTAGTATAAATT  500

seq1  CTACTCCAATTCAAATATAAAGAAACAAATATATGGATAATTGGGTGTAT  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCCAATTCAAATATAAAGAAACAAATATATGGATAATTGGGTGTAT  550

seq1  CTATCCAAAATAAATAAATAAATAGGCAGGAATTTTATCTTTTATCTTGT  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCAAAATAAATAAATAAATAGGCAGGAATTTTATCTTTTATCTTGT  600

seq1  ATCCTAGGCTGGTCTGTCAAATGTGTTAATCTCCAGGTTTCACTTCTGGA  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAGGCTGGTCTGTCAAATGTGTTAATCTCCAGGTTTCACTTCTGGA  650

seq1  GCCCAAGATGACAGGCAGATACCAGCACACACAGCTTGTGCAGTGCTTCT  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAGATGACAGGCAGATACCAGCACACACAGCTTGTGCAGTGCTTCT  700

seq1  ATTCACATCCAAGTCTTTGTTCATATAAGGCAAGGTCTCCATCCTCTGAA  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACATCCAAGTCTTTGTTCATATAAGGCAAGGTCTCCATCCTCTGAA  750

seq1  TTTCATCTCTAGCCCAGAGGATGCTCTTAACACATGCACAAAAATAGCTG  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCTCTAGCCCAGAGGATGCTCTTAACACATGCACAAAAATAGCTG  800

seq1  ATGCATTATGGCCACTTAGGTTGAAGAAAAGCTAAGAAAAGAAACATGAA  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTATGGCCACTTAGGTTGAAGAAAAGCTAAGAAAAGAAACATGAA  850

seq1  ACTGCATTTAAAATTATTTTAAAAGACCTAGGAAGTCAGCACGATCGCTG  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATTTAAAATTATTTTAAAAGACCTAGGAAGTCAGCACGATCGCTG  900

seq1  AAGTTAAATATAGGGATCCTATTGGTTTAACACTTCGGGTTTCATTTGAA  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAAATATAGGGATCCTATTGGTTTAACACTTCGGGTTTCATTTGAA  950

seq1  ACTGTACAGAATGATGTCCTTTCTAGAGTTTCTCCCTGAGTGAGCTTTTA  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTACAGAATGATGTCCTTTCTAGAGTTTCTCCCTGAGTGAGCTTTTA  1000

seq1  TATGAATTC  989
      |||||||||
seq2  TATGAATTC  1009


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