BAC Information

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BAC

Clone NameB6Ng01-221O05
Chromosome16 (Build37)
Map Location 50,834,213 - 50,939,486
singlet/doubletdoublet
Overlap genenone
Upstream geneCd47, EG433024, LOC100043769, LOC628951, EG224180, EG667802, LOC100043404, Bbx, LOC100043414, Ccdc54, LOC672778, 5330426P16Rik
Downstream geneEG639820, LOC627543
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221O05.bB6Ng01-221O05.g
ACCGA037056GA037057
length1,1031,100
definitionB6Ng01-221O05.b B6Ng01-221O05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,938,393 - 50,939,486)(50,834,213 - 50,835,320)
sequence
ttggacgtccgactgggaaaccaccgttgttggactatcatgattgtgag
ccactctaataaagtactttttttatgtacactgattcattctatctgtt
cagtttctttagagaactctgaataataccagtaatgtttagcctcactc
ataatcacttacatgcaatcaacccaattttaagacaaaattgacagtga
taagagataaggtctggctgtctcataaatataggaatttttctcctaaa
atgctgaaaattagttttttcatctgccattgttttaacacactctgatg
ggttatgcatctactttcccactttttaatctatgctgtcaaagaaattc
agacaagtgtcatgtggggagagataatcatgtgactctattttcctaat
ccagatatctgtccacttttctcagtgatattttcatgtatcttttgcat
tttaacatgtgatatatttgacatgcttagcagatgtcgctatagcacac
aaaatataaaacatgcaagaagcttttaaagaattgtcatgcagagagaa
gtggacagttgagccaaagatcttcaaaacactagaggtttaaatcctaa
gttttacgtaaaaaaattccttaaattttggaatttatataaattctact
ttctttttattttttagcataatggatatgaagactactagaaaaagcaa
gcaaagaaacccattgttcctgtaaggtaattttgtagctgtatgcatag
acagcctgtcagagggatcattggttaggacatcatttgtctgtgtgaat
tttctttctcctaccctcagcatgccttccaagctgctttccattataag
taaaggcattctgtcttttgtatgagtccttgaaaaaaatctttcttggg
tataaaaagctttccatcaacttaataagggaggcagagacgtggagcca
tagaagagcacacaattatttcactgccttcctgtagtgagtttgaagtg
tttcagcaagggaaggatttctacattctcatggatctgtgcttacctta
atctcttagtagaaacccttctttcaaatctttagagtctggtgtcatcg
cat
gaattcaggacagcaactccatcagggtaatattttggagacaagagatg
atgcagaggccacggaggagcgctgtttactggcttgctcttcaaggctt
gctcaatttgttttgttatccaccccagaaccaccagcccactgaacact
atgggctaggacttcccatgtcagtcatcaatcaagaaaatgacccacag
gccaaagtgttgagggcattgtctcaattgacattctctcttccaaaatg
gctctggcatgtgtcaatctgacataaaaactaaccaggacagtcagtga
tataacagatgctcaaacagactttctgaagcaatgaagagaaaatgatg
gcatagcttgtcgctatatgcatatttctacaacctactatccactttcc
ccccaaattcattaatcaactaacagttgtccacattaggaccatgacag
acaatgcataccagctctattgagaacaatggccagaaactctgcctcca
aacagcaaactgtttgggcttagatatcctgggaaagttaaaattaagag
aaagttaccagatcaccttggtactgggtgccaatagaggcaatttttat
tttctatgaagataaagcagtaatggttgaaagaaaacactaaacataca
tcccagtttttctcctggaaggtgaggggtagtcaggcttcatcagggag
agttttcgagccccggttgcaagattagggtcacatggtgactaacatct
catgagtatctaagtcatctatatttctcagtataatttaaatatgcttt
tgtattctttgcctagaattcataaagaaaaagaatacttaccatgacca
tacaatttttaactgaatttactttagacttgttttccctttcattccaa
aagattttctttcctcatgccttccatgaagtttataacatcatacttat
acaggaaacttttactagaaaaagggtgtgtgtgttccagttaatttcct
ctttctttgtgtacacacagattcattctactcacatatcagatgtgtgc
tggtaaagtgtgtcaaggtttgctctctgaatttttggtcacccacctca

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_50938393_50939486
seq2: B6Ng01-221O05.b_59_1161 (reverse)

seq1  ATGCGATGACACCAG-CTCTAAAGATTTGGAAGA--GGGTTCTCTGAAGA  47
      ||||||||||||||| ||||||||||||| ||||  || ||||   ||||
seq2  ATGCGATGACACCAGACTCTAAAGATTTGAAAGAAGGGTTTCTACTAAGA  50

seq1  GAATTAGGTAAGCACAGATCCATG-GAATGTAGAAATCC-TCCCTTGCTG  95
      || | ||||||||||||||||||| |||||||||||||| ||||||||||
seq2  GATTAAGGTAAGCACAGATCCATGAGAATGTAGAAATCCTTCCCTTGCTG  100

seq1  -AACACCTCAAACTCACTACAGGGAAAGCAGTGAAATAATTGTGTGCTCT  144
       ||||| |||||||||||||| |||| |||||||||||||||||||||||
seq2  AAACACTTCAAACTCACTACA-GGAAGGCAGTGAAATAATTGTGTGCTCT  149

seq1  TCTAT-GCTCCACGTCTCTGCCTCCCTTATTTAGTTGATGGAAAGCTTTT  193
      ||||| ||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCTATGGCTCCACGTCTCTGCCTCCCTTATTAAGTTGATGGAAAGCTTTT  199

seq1  TATACCCAAGAAAGATTTTTTTTCAAGGACTCATACAAAAGAACAGAATG  243
      ||||||||||||||| ||||||||||||||||||||||||| ||||||||
seq2  TATACCCAAGAAAGA-TTTTTTTCAAGGACTCATACAAAAG-ACAGAATG  247

seq1  CCTTTACTTATAATGGAAAGCAGCTTGGAAGGCATGCTGAGGGTAGGAGA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACTTATAATGGAAAGCAGCTTGGAAGGCATGCTGAGGGTAGGAGA  297

seq1  AAG-AAATTCACACAGACAAATGATGTCCTAACCAATGATCCCTCTGACA  342
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATTCACACAGACAAATGATGTCCTAACCAATGATCCCTCTGACA  347

seq1  GGCTGTCTATGCATACAGCTACAAAATTACCTTACAGGAACAATGGGTTT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCTATGCATACAGCTACAAAATTACCTTACAGGAACAATGGGTTT  397

seq1  CTTTGCTTGC-TTTTCTAGTAGTCTTCATATCCATTATGCT-AAAAATAA  440
      |||||||||| |||||||||||||||||||||||||||||| ||||||||
seq2  CTTTGCTTGCTTTTTCTAGTAGTCTTCATATCCATTATGCTAAAAAATAA  447

seq1  AA--GAAGTAGAATTTATATAAATTCCAAAATTTAAGGAATTTTTTTACG  488
      ||   |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGTAGAATTTATATAAATTCCAAAATTTAAGGAATTTTTTTACG  497

seq1  TAAAACTTAGGATTTAAACCTCTAGTGTTTTGAAGATCTTTGGCTCAACT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTTAGGATTTAAACCTCTAGTGTTTTGAAGATCTTTGGCTCAACT  547

seq1  GTCCACTTCTCTCTGCATGACAATTCTTTAAAAGCTTCTTGCATGTTTTA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACTTCTCTCTGCATGACAATTCTTTAAAAGCTTCTTGCATGTTTTA  597

seq1  TATTTTGTGTGCTATAGCGACATCTGCTAAGCATGTCAAATATATCACAT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTGTGCTATAGCGACATCTGCTAAGCATGTCAAATATATCACAT  647

seq1  GTTAAAATGCAAAAGATACATGAAAATATCACTGAGAAAAGTGGACAGAT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAATGCAAAAGATACATGAAAATATCACTGAGAAAAGTGGACAGAT  697

seq1  ATCTGGATTAGGAAAATAGAGTCACATGATTATCTCTCCCCACATGACAC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGATTAGGAAAATAGAGTCACATGATTATCTCTCCCCACATGACAC  747

seq1  TTGTCTGAATTTCTTTGACAGCATAGATTAAAAAGTGGGAAAGTAGATGC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGAATTTCTTTGACAGCATAGATTAAAAAGTGGGAAAGTAGATGC  797

seq1  ATAACCCATCAGAGTGTGTTAAAACAATGGCAGATGAAAAAACTAATTTT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCCATCAGAGTGTGTTAAAACAATGGCAGATGAAAAAACTAATTTT  847

seq1  CAGCATTTTAGGAGAAAAATTCCTATATTTATGAGACAGCCAGACCTTAT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTTTAGGAGAAAAATTCCTATATTTATGAGACAGCCAGACCTTAT  897

seq1  CTCTTATCACTGTCAATTTTGTCTTAAAATTGGGTTGATTGCATGTAAGT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTATCACTGTCAATTTTGTCTTAAAATTGGGTTGATTGCATGTAAGT  947

seq1  GATTATGAGTGAGGCTAAACATTACTGGTATTATTCAGAGTTCTCTAAAG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATGAGTGAGGCTAAACATTACTGGTATTATTCAGAGTTCTCTAAAG  997

seq1  AAACTGAACAGATAGAATGAATCAGTGTACATAAAAAAAGTACTTTATTA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAACAGATAGAATGAATCAGTGTACATAAAAAAAGTACTTTATTA  1047

seq1  GAGTGGCTCACAATCATGATAGTCCAACAACGGTGGTTTCCCAGTCGGAC  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGCTCACAATCATGATAGTCCAACAACGGTGGTTTCCCAGTCGGAC  1097

seq1  GTCCAA  1094
      ||||||
seq2  GTCCAA  1103

seq1: chr16_50834213_50835320
seq2: B6Ng01-221O05.g_66_1165

seq1  GAATTCAGGACAGCAACTCCATCAGGGTAATATTTTGGAGACAAGAGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGACAGCAACTCCATCAGGGTAATATTTTGGAGACAAGAGATG  50

seq1  ATGCAGAGGCCACGGAGGAGCGCTGTTTACTGGCTTGCTCTTCAAGGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAGGCCACGGAGGAGCGCTGTTTACTGGCTTGCTCTTCAAGGCTT  100

seq1  GCTCAATTTGTTTTGTTATCCACCCCAGAACCACCAGCCCACTGAACACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAATTTGTTTTGTTATCCACCCCAGAACCACCAGCCCACTGAACACT  150

seq1  ATGGGCTAGGACTTCCCATGTCAGTCATCAATCAAGAAAATGACCCACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTAGGACTTCCCATGTCAGTCATCAATCAAGAAAATGACCCACAG  200

seq1  GCCAAAGTGTTGAGGGCATTGTCTCAATTGACATTCTCTCTTCCAAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAGTGTTGAGGGCATTGTCTCAATTGACATTCTCTCTTCCAAAATG  250

seq1  GCTCTGGCATGTGTCAATCTGACATAAAAACTAACCAGGACAGTCAGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGCATGTGTCAATCTGACATAAAAACTAACCAGGACAGTCAGTGA  300

seq1  TATAACAGATGCTCAAACAGACTTTCTGAAGCAATGAAGAGAAAATGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACAGATGCTCAAACAGACTTTCTGAAGCAATGAAGAGAAAATGATG  350

seq1  GCATAGCTTGTCGCTATATGCATATTTCTACAACCTACTATCCACTTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGCTTGTCGCTATATGCATATTTCTACAACCTACTATCCACTTTCC  400

seq1  CCCCAAATTCATTAATCAACTAACAGTTGTCCACATTAGGACCATGACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAATTCATTAATCAACTAACAGTTGTCCACATTAGGACCATGACAG  450

seq1  ACAATGCATACCAGCTCTATTGAGAACAATGGCCAGAAACTCTGCCTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCATACCAGCTCTATTGAGAACAATGGCCAGAAACTCTGCCTCCA  500

seq1  AACAGCAAACTGTTTGGGCTTAGATATCCTGGGAAAGTTAAAATTAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAAACTGTTTGGGCTTAGATATCCTGGGAAAGTTAAAATTAAGAG  550

seq1  AAAGTTACCAGATCACCTTGGTACTGGGTGCCAATAGAGGCAATTTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTACCAGATCACCTTGGTACTGGGTGCCAATAGAGGCAATTTTTAT  600

seq1  TTTCTATGAAGATAAAGCAGTAATGGTTGAAAGAAAACACTAAACATACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATGAAGATAAAGCAGTAATGGTTGAAAGAAAACACTAAACATACA  650

seq1  TCCCAGTTTTTCTCCTGGAAGGTGAGGGGTAGTCAGGCTTCATCAGGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTTTTTCTCCTGGAAGGTGAGGGGTAGTCAGGCTTCATCAGGGAG  700

seq1  AGTTTTCGAGCCCCGGTTGCAAGATTAGGGTCACATGGTGACTAACATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCGAGCCCCGGTTGCAAGATTAGGGTCACATGGTGACTAACATCT  750

seq1  CATGAGTATCTAAGTCATCTATATTTCTCAGTATAATTTAAATATGCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTATCTAAGTCATCTATATTTCTCAGTATAATTTAAATATGCTTT  800

seq1  TGTATTCTTTGCCTAGAATTCATAAAGAAAAAGAATACTTACCATGACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCTTTGCCTAGAATTCATAAAGAAAAAGAATACTTACCATGACCA  850

seq1  TACAA-TTTTAACTGAATTTACTTTAGACTTGTTTTCCCTTTCATTCCCA  899
      ||||| |||||||||||||||||||||||||||||||||||||||| |||
seq2  TACAATTTTTAACTGAATTTACTTTAGACTTGTTTTCCCTTTCATT-CCA  899

seq1  AAAGATTTTCTTTCCTCATGCCTTCCATGAAGTTTATACCATCATACTTT  949
      |||||||||||||||||||||||||||||||||||||| |||||||| ||
seq2  AAAGATTTTCTTTCCTCATGCCTTCCATGAAGTTTATAACATCATAC-TT  948

seq1  ATACAGGAAAC-TTTACTAG-AAAAGGGTGTGGTGTGTTCCAGTTAATTT  997
      ||||||||||| |||||||| |||||||||| ||||||||||||||||||
seq2  ATACAGGAAACTTTTACTAGAAAAAGGGTGT-GTGTGTTCCAGTTAATTT  997

seq1  CCTCTTTCTTTGTGTACACAACAAGGATTCCATTCTTACTCACATATCAG  1047
      ||||||||||||||||||| |||  |||| ||||| ||||||||||||||
seq2  CCTCTTTCTTTGTGTACAC-ACA--GATT-CATTC-TACTCACATATCAG  1042

seq1  ATGTGTGCTGGGTAAAGTGTGTCCAAGTTTGGCTCTCTTGGAATTTTTGG  1097
      ||||||||| |||||||||||| |||| || |||||||  ||||||||||
seq2  ATGTGTGCT-GGTAAAGTGTGT-CAAGGTTTGCTCTCT--GAATTTTTGG  1088

seq1  TCA-CCACCTCA  1108
      ||| ||||||||
seq2  TCACCCACCTCA  1100