BAC Information

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BAC

Clone NameB6Ng01-221P17
Chromosome16 (Build37)
Map Location 25,826,431 - 25,946,369
singlet/doubletdoublet
Overlap geneTrp63
Upstream geneLpp, 5430420C16Rik
Downstream geneLOC100043571, Leprel1, Cldn1, Cldn16, LOC100043057, Il1rap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221P17.bB6Ng01-221P17.g
ACCGA037127GA037128
length1,1101,044
definitionB6Ng01-221P17.b B6Ng01-221P17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,945,251 - 25,946,369)(25,826,431 - 25,827,469)
sequence
gaattcctatttgaaagataaggaaagcaggcttggggagaaagggaagc
cattggtacatacataggacctacatggcccatacattctgcttgatact
tttgagtctattatcatcattattccctttactgaaatttgaaagtgact
ttcatcaacttttacagggggattgttctgcaaaagttgtatgtctcaac
atatagctctttgccattgacaaatgcattgtcctctggccagcaggcca
atcacaacatggaacagttctatcccagggctgccctttggagatagtct
ctccctacttgatgacaatcactggatggttcttcagccctacagtgtgc
tcactcgcaccttcagcaaacagcatatcagagctccaagagtttaagca
actgggtcctggtaggcagctaatgagtgactggatctcatctttgaacc
cagcaccgtggattccttgtgaaggtggaaagtgtgagctcggagccaag
gaaaacagctgtcacgtttccccagcctgcctttcagagagggctctgtc
tcttcagggctctgttagaggcaagcaaacaacctcattaccaaaggcaa
tatctgatcgtgttccacctctgatcaccggtaggtgctgagggaagact
ctgtccctgcccagtggaacaatctgaaagccattactatctgcaggctg
ctcggcagactatggcgtaagagattggtttctcttccagttcctttact
tatctggaagacaagagggtactgaaaggaggtcactggtaaacacttta
gtctctcagttcagcagcttccccactaaagcctgggggccctttgccag
acgggtgagtctgcaggtgagccttgcttgcacaaagtgggtgcttctgc
taattgggttgatgtaattaactgtcgtggcttattttattttcaccccg
ggaagccagccatggtctcagcattgagcagtttttgctggggcagccct
gcagcagcagtgagcacaacatttggtagctcaactgcaacaggcactca
agtaagagcaagctgtccgctgggacagagccattacctggggctgggag
gtgagcaatg

gaattcagactcttatggctagcccttcaaaggacatgataaacttctcc
acgttgtcgttgtctgtgatttgcagattcttctcataaagaaaatattt
ctaggctcaggtcatggctcagtgttgaagtatagtgttcgcatacaaga
ttctgggttcaatttctaacacactctgtctatgtctctgtctctgtatt
ttgctgtctgtctctttctctcctctctgtttctatgcctttttgtctct
ctctgtctttctatctctgtctttctcttttacacacacacacacacaca
cacacacacacacacacacacacaatttaagccttaatttggccttagtg
tagtctcagttaatgacagttagattttattgctgaaggaaaagagagaa
attggtagcctataacaaggttatttttagttcttggcatagctgttctg
taaattacctgagatacatataaacgcatctttctgtacatcaaacacgc
taatgagttacccaagctatttcttagaacacagagtactaagtaagaat
gtctcaaataacatgcttggtgactctcaatgatggttacagtgactgcc
tttggggtttggatttacacacatccctagacaggcatgctacagaagag
atgttcctcagtccagagcataattattcagccatttagctgagtctgag
ttcatctaatctgatgtttatcacactcctactttcttcttagtgatttg
taggctaaaagcatgggagtttctttcaagacaattaatgttgatctatt
tgagtctgagtattataaggaccattgatccaacagaaataattttcaaa
ttatcgcttttacactacaaaaagaatctgtgtttttctctatcctttct
attctttcttttcttcccacccccttaaatctccacccattctcctctgt
cttctcctatgtgttgtcctcttgttttctcctcctttcttaggtatact
cataggggccaacaagctttgtaagggatcactagccaatgagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_25945251_25946369
seq2: B6Ng01-221P17.b_47_1156 (reverse)

seq1  CATTGCTCACCCTCCAGCCCCCAGGGAAATGGCTCTGTCCCAGCGG-CAG  49
      |||||||||||  ||||||||   || ||||||||||||||||||| |||
seq2  CATTGCTCACCTCCCAGCCCC--AGGTAATGGCTCTGTCCCAGCGGACAG  48

seq1  CCTGCTCTTTACTTTGAAGTTGCTGTTTGCATTTGGAGCTCCAAAAATGT  99
      | ||||| ||||||   |||  ||| ||||| || ||||| |  ||||| 
seq2  CTTGCTC-TTACTT--GAGTGCCTG-TTGCAGTT-GAGCTAC-CAAATG-  91

seq1  TTGTGCTCACTGCTGCTGCA-GGCTGGCCCAGC-AAAACTGCTC-ATGCT  146
      |||||||||||||||||||| ||||| |||||| |||||||||| |||||
seq2  TTGTGCTCACTGCTGCTGCAGGGCTGCCCCAGCAAAAACTGCTCAATGCT  141

seq1  GAGACCATGGCTGGCTTCCC-GGGTGAAAAAAAAAAAAAAAAAAACCACG  195
      |||||||||||||||||||| |||||      |||| |||| || |||||
seq2  GAGACCATGGCTGGCTTCCCGGGGTG------AAAATAAAATAAGCCACG  185

seq1  ACAGTTAATTACATCAACCCAATTAGCAGAAGCACCCACCTTGTGCAAGC  245
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACAGTTAATTACATCAACCCAATTAGCAGAAGCACCCACTTTGTGCAAGC  235

seq1  AAGGCTCACCTGCAGACTCACCCGTCTGGCAAAGGGCCCCCAGGCTTTAG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCACCTGCAGACTCACCCGTCTGGCAAAGGGCCCCCAGGCTTTAG  285

seq1  TGGGGAAGCTGCTGAACTGAGAGACTAAAGTGTTTACCAGTGACCTCCTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAGCTGCTGAACTGAGAGACTAAAGTGTTTACCAGTGACCTCCTT  335

seq1  TCAGTACCCTCTTGTCTTCCAGATAAGTAAAGGAACTGGAAGAG-AACCA  394
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCAGTACCCTCTTGTCTTCCAGATAAGTAAAGGAACTGGAAGAGAAACCA  385

seq1  ATCTCTTACGCCATAGTCTGCCGAGCAGCCTGCAGATAGTAATGGCTTTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTACGCCATAGTCTGCCGAGCAGCCTGCAGATAGTAATGGCTTTC  435

seq1  AGATTGTTCCACTGGGCAGGGACAGAGTCTTCCCTCAGCACCTACCGGTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTTCCACTGGGCAGGGACAGAGTCTTCCCTCAGCACCTACCGGTG  485

seq1  ATCAGAGGTGGAACACGATCAGATATTGCCTTTGGTAATGAGGTTGTTTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGGTGGAACACGATCAGATATTGCCTTTGGTAATGAGGTTGTTTG  535

seq1  CTTGCCTCTAACAGAGCCCTGAAGAGACAGAGCCCTCTCTGAAAGGCAGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTCTAACAGAGCCCTGAAGAGACAGAGCCCTCTCTGAAAGGCAGG  585

seq1  CTGGGGAAACGTGACAGCTGTTTTCCTTGGCTCCGAGCTCACACTTTCCA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGAAACGTGACAGCTGTTTTCCTTGGCTCCGAGCTCACACTTTCCA  635

seq1  CCTTCACAAGGAATCCACGGTGCTGGGTTCAAAGATGAGATCCAGTCACT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACAAGGAATCCACGGTGCTGGGTTCAAAGATGAGATCCAGTCACT  685

seq1  CATTAGCTGCCTACCAGGACCCAGTTGCTTAAACTCTTGGAGCTCTGATA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGCTGCCTACCAGGACCCAGTTGCTTAAACTCTTGGAGCTCTGATA  735

seq1  TGCTGTTTGCTGAAGGTGCGAGTGAGCACACTGTAGGGCTGAAGAACCAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTTGCTGAAGGTGCGAGTGAGCACACTGTAGGGCTGAAGAACCAT  785

seq1  CCAGTGATTGTCATCAAGTAGGGAGAGACTATCTCCAAAGGGCAGCCCTG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGATTGTCATCAAGTAGGGAGAGACTATCTCCAAAGGGCAGCCCTG  835

seq1  GGATAGAACTGTTCCATGTTGTGATTGGCCTGCTGGCCAGAGGACAATGC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGAACTGTTCCATGTTGTGATTGGCCTGCTGGCCAGAGGACAATGC  885

seq1  ATTTGTCAATGGCAAAGAGCTATATGTTGAGACATACAACTTTTGCAGAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCAATGGCAAAGAGCTATATGTTGAGACATACAACTTTTGCAGAA  935

seq1  CAATCCCCCTGTAAAAGTTGATGAAAGTCACTTTCAAATTTCAGTAAAGG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCCCCTGTAAAAGTTGATGAAAGTCACTTTCAAATTTCAGTAAAGG  985

seq1  GAATAATGATGATAATAGACTCAAAAGTATCAAGCAGAATGTATGGGCCA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATGATGATAATAGACTCAAAAGTATCAAGCAGAATGTATGGGCCA  1035

seq1  TGTAGGTCCTATGTATGTACCAATGGCTTCCCTTTCTCCCCAAGCCTGCT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTCCTATGTATGTACCAATGGCTTCCCTTTCTCCCCAAGCCTGCT  1085

seq1  TTCCTTATCTTTCAAATAGGAATTC  1119
      |||||||||||||||||||||||||
seq2  TTCCTTATCTTTCAAATAGGAATTC  1110


seq1: chr16_25826431_25827469
seq2: B6Ng01-221P17.g_69_1112

seq1  GAATTCAGACTCTTATGGCTAGCCCTTCAAAGGACATGATAAACTTCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACTCTTATGGCTAGCCCTTCAAAGGACATGATAAACTTCTCC  50

seq1  ACGTTGTCGTTGTCTGTGATTTGCAGATTCTTCTCATAAAGAAAATATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTGTCGTTGTCTGTGATTTGCAGATTCTTCTCATAAAGAAAATATTT  100

seq1  CTAGGCTCAGGTCATGGCTCAGTGTTGAAGTATAGTGTTCGCATACAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCTCAGGTCATGGCTCAGTGTTGAAGTATAGTGTTCGCATACAAGA  150

seq1  TTCTGGGTTCAATTTCTAACACACTCTGTCTATGTCTCTGTCTCTGTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGTTCAATTTCTAACACACTCTGTCTATGTCTCTGTCTCTGTATT  200

seq1  TTGCTGTCTGTCTCTTTCTCTCCTCTCTGTTTCTATGCCTTTTTGTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTCTGTCTCTTTCTCTCCTCTCTGTTTCTATGCCTTTTTGTCTCT  250

seq1  CTCTGTCTTTCTATCTCTGTCTTTCTCTTTTACACACACACACACACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTTTCTATCTCTGTCTTTCTCTTTTACACACACACACACACACA  300

seq1  CACACACACACACACACACACACAATTTAAGCCTTAATTTGGCCTTAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACAATTTAAGCCTTAATTTGGCCTTAGTG  350

seq1  TAGTCTCAGTTAATGACAGTTAGATTTTATTGCTGAAGGAAAAGAGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTCAGTTAATGACAGTTAGATTTTATTGCTGAAGGAAAAGAGAGAA  400

seq1  ATTGGTAGCCTATAACAAGGTTATTTTTAGTTCTTGGCATAGCTGTTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTAGCCTATAACAAGGTTATTTTTAGTTCTTGGCATAGCTGTTCTG  450

seq1  TAAATTACCTGAGATACATATAAACGCATCTTTCTGTACATCAAACACGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTACCTGAGATACATATAAACGCATCTTTCTGTACATCAAACACGC  500

seq1  TAATGAGTTACCCAAGCTATTTCTTAGAACACAGAGTACTAAGTAAGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGTTACCCAAGCTATTTCTTAGAACACAGAGTACTAAGTAAGAAT  550

seq1  GTCTCAAATAACATGCTTGGTGACTCTCAATGATGGTTACAGTGACTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAAATAACATGCTTGGTGACTCTCAATGATGGTTACAGTGACTGCC  600

seq1  TTTGGGGTTTGGATTTACACACATCCCTAGACAGGCATGCTACAGAAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGTTTGGATTTACACACATCCCTAGACAGGCATGCTACAGAAGAG  650

seq1  ATGTTCCTCAGTCCAGAGCATAATTATTCAGCCATTTAGCTGAGTCTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCCTCAGTCCAGAGCATAATTATTCAGCCATTTAGCTGAGTCTGAG  700

seq1  TTCATCTAATCTGATGTTTATCACACTCCTACTTTCTTCTTAGTGATTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTAATCTGATGTTTATCACACTCCTACTTTCTTCTTAGTGATTTG  750

seq1  TAGGCT-AAAGCAT-GGAGTTTCTTTCAAGACAATTAATGTTGATCTA-T  797
      |||||| ||||||| ||||||||||||||||||||||||||||||||| |
seq2  TAGGCTAAAAGCATGGGAGTTTCTTTCAAGACAATTAATGTTGATCTATT  800

seq1  TGAGTCTGAGTATTATAAGGACCATTGATCCAACAGAAATAATTTTCAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTGAGTATTATAAGGACCATTGATCCAACAGAAATAATTTTCAAA  850

seq1  TTATCGCTTTTACACTACAAAAAGAATCTGTGTTTTTCTCTATCC-TTCT  896
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTATCGCTTTTACACTACAAAAAGAATCTGTGTTTTTCTCTATCCTTTCT  900

seq1  ATTCTTTCTTTTCTTCCCACCCC--TAAATCTCCACCCATTCTTCTCTGT  944
      |||||||||||||||||||||||  |||||||||||||||||| ||||||
seq2  ATTCTTTCTTTTCTTCCCACCCCCTTAAATCTCCACCCATTCTCCTCTGT  950

seq1  CTTCT-CTATGTGTTGTCCTCTTGTCTTTCTCCTCCTTTCTTAGTTATTA  993
      ||||| ||||||||||||||||||| |||||||||||||||||| || ||
seq2  CTTCTCCTATGTGTTGTCCTCTTGT-TTTCTCCTCCTTTCTTAGGTA-TA  998

seq1  CTCATAGTGGCCAACCAAGCTTTGT-AGGGATCACTAGCCAATGAGT  1039
      ||||||| |||||| |||||||||| |||||||||||||||||||||
seq2  CTCATAGGGGCCAA-CAAGCTTTGTAAGGGATCACTAGCCAATGAGT  1044


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