BAC Information

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BAC

Clone NameB6Ng01-222D07
Chromosome16 (Build37)
Map Location 18,903,659 - 18,904,802
singlet/doubletsinglet
Overlap geneHira
Upstream geneEs2el, Gscl, Slc25a1, Vpreb2, Dgcr6, Prodh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l, Tbx1, Gp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik, Mrpl40
Downstream geneIgl, Igl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1, Igl-C4, Igl-J4, Igl-C2, Igl-J2, Igl-V3, Igl-V2, Olfr164, Olfr165, Olfr166, Olfr167, Olfr168, Olfr169, Olfr170, Olfr171, LOC100043444, Lamp3, B3gnt5, LOC100042935, A930003A15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222D07.bB6Ng01-222D07.g
ACCGA037290GA037291
length1,2191,137
definitionB6Ng01-222D07.b B6Ng01-222D07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacct
gtagccaacatcaaagtaaatgatgagaagctggaagcaatcccaccaaa
atcagcgactagacaatgctgcccactttctccctacctatttaacattg
tacttgaagtcctagccagatagatttgacaacaaaacgagatcaagggg
atacaaattggaaaagaagaagtcaaaatatcactttttgcaaatgatat
aatagtatatataagtgaccctaaaaattccaccagagaactcctaaacc
tgataaacagcttcggtgaagtagatggatataaaattaactcaaacaag
tcaatggcctttctcaacacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaatagtataaaatacctaggcg
taactctaactatggaagtgaaagatttctatgataagaacttcaagtct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatgaattggcaggatcaacgttgtaaaaatggctaccttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattagaaagagcaatctgcaatttcatatggaataacaaaaaacc
gaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatca
ccatgcctgacctaaagttgtattacattgcaattgtgataaaaactgca
tggtactgttggtagtgacagataagtagaccaatggaatagaaatgaag
acccagaaatgaacccacacacctattgtcacttaatcttcaacaaggga
gctaaaaccatccagtggaagaaagacagcattttcaacaaatggtgctg
gcacaactggtagttatcatgtagaagaatgtgaatttattttattgcta
tctacttgtactaagatcaaatctaagtggatcaaggacacacataaacc
agagacactgaaactatagagagaagtgggggaaagctcgagatatgagc
actatggaaaatctgaatagaaacagcaatggcctgttctgtagattgag
aatggacaatgactcataaactgcaagcttctgttaaggcataggaacac
cggtcattaggaccgatag
gaattcaggacctctggaagagcagtcaagtgcttttaactgctgagccg
tctctccagcccaaggtggtgcacaccattaactccagcactctagagtc
agaggcagatatatgtatctctgggagttcaagaccagcaccatgagagt
ttcagaacagccaaagctacatagtgaaaccatatttaacaacaacaaaa
acaacaacaataacgtgacgaaacccaacaacaacaacaacaacaacaat
gtgacaaagcccaaaagaagacaatgagcgtgcagatattgcagttcaca
gttaagtctatttttcttttatactgagaaaagatagaatgagttaagct
gtgtattttgttgcttgaaaggtttagtagtacagttacatagactacag
gagagggtagaggacatattggaaacacagaagtaaagcattgtgtcata
tccagcaaaagcaaagcaataacaaagcactgaagaaaacacttagaact
actgaagtaagccattcagttagcctcatatgaaagcatgtatcttttat
tagtgatagccaaatagaatatctaatgattataaaagaagcctcatgac
caataacgtaaaaagttgtgaatacctaggaataatattaccaagaaata
catgacatctgacttaaagtgtagacttattcaaaaaacgtttacaatgc
tggggatttgactcagggtcttgcatattagacaagcaccctgcccttga
actacaactccagctgtccttcttttctcttctcgttttagaaattgagt
cttgccctgattgcctagacccaagtcctacttcagctttctaaacagct
ttcccaaatttgagtaggaaaataggtatatattatcatcacaaactttt
attaagtatgaggcaaactctttgcacatagctcatggtgatgtgtaact
tggtgtatctccaggctgggctcaagttcatgatcttcctgccatagttt
cctgaatattggtatataggcaggaccattgtgcttggctcacagtcttt
tttgaaaagaaaatataattcattatcaatagaatttaatgttattccaa
cttattactcatcaatgtaacagttacttgatcacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_18903659_18904802
seq2: B6Ng01-222D07.g_65_1201

seq1  GAATTCAGGACCTCTGGAAGAGCAGTCAAGTGCTTTTAACTGCTGAGCCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGACCTCTGGAAGAGCAGTCAAGTGCTTTTAACTGCTGAGCCG  50

seq1  TCTCTCCAGCCCAAGGTGGTGCACACCATTAACTCCAGCACTCTAGAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCAGCCCAAGGTGGTGCACACCATTAACTCCAGCACTCTAGAGTC  100

seq1  AGAGGCAGATATATGTATCTCTGGGAGTTCAAGACCAGCACCATGAGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGATATATGTATCTCTGGGAGTTCAAGACCAGCACCATGAGAGT  150

seq1  TTCAGAACAGCCAAAGCTACATAGTGAAACCATATTTAACAACAACAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAACAGCCAAAGCTACATAGTGAAACCATATTTAACAACAACAAAA  200

seq1  ACAACAACAATAACGTGACGAAACCCAACAACAACAACAACAACAACAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAACAATAACGTGACGAAACCCAACAACAACAACAACAACAACAAT  250

seq1  GTGACAAAGCCCAAAAGAAGACAATGAGCGTGCAGATATTGCAGTTCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAAAGCCCAAAAGAAGACAATGAGCGTGCAGATATTGCAGTTCACA  300

seq1  GTTAAGTCTATTTTTCTTTTATACTGAGAAAAGATAGAATGAGTTAAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGTCTATTTTTCTTTTATACTGAGAAAAGATAGAATGAGTTAAGCT  350

seq1  GTGTATTTTGTTGCTTGAAAGGTTTAGTAGTACAGTTACATAGACTACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTTTGTTGCTTGAAAGGTTTAGTAGTACAGTTACATAGACTACAG  400

seq1  GAGAGGGTAGAGGACATATTGGAAACACAGAAGTAAAGCATTGTGTCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGTAGAGGACATATTGGAAACACAGAAGTAAAGCATTGTGTCATA  450

seq1  TCCAGCAAAAGCAAAGCAATAACAAAGCACTGAAGAAAACACTTAGAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCAAAAGCAAAGCAATAACAAAGCACTGAAGAAAACACTTAGAACT  500

seq1  ACTGAAGTAAGCCATTCAGTTAGCCTCATATGAAAGCATGTATCTTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGTAAGCCATTCAGTTAGCCTCATATGAAAGCATGTATCTTTTAT  550

seq1  TAGTGATAGCCAAATAGAATATCTAATGATTATAAAAGAAGCCTCATGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGATAGCCAAATAGAATATCTAATGATTATAAAAGAAGCCTCATGAC  600

seq1  CAATAACGTAAAAAGTTGTGAATACCTAGGAATAATATTACCAAGAAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAACGTAAAAAGTTGTGAATACCTAGGAATAATATTACCAAGAAATA  650

seq1  CATGACATCTGACTTAAAGTGTAGACTTATTCAAAAAACGTTTACAATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACATCTGACTTAAAGTGTAGACTTATTCAAAAAACGTTTACAATGC  700

seq1  TGGGGATTTGACTCAGGGTCTTGCATATTAGACAAGCACCCTGCCCTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGATTTGACTCAGGGTCTTGCATATTAGACAAGCACCCTGCCCTTGA  750

seq1  ACTACAACTCCAGCTGTCCTTCTTTTCTCTTCTCGTTTTAGAAATTGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAACTCCAGCTGTCCTTCTTTTCTCTTCTCGTTTTAGAAATTGAGT  800

seq1  CTTGCCCTGATTGCCTAGACCCAAGTCCTACTTCAGCTTTCTAAACAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCCTGATTGCCTAGACCCAAGTCCTACTTCAGCTTTCTAAACAGCT  850

seq1  TTCCCAAATTTGAGTAGGAAAATAGGTATATATTATCATCACAAACTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAATTTGAGTAGGAAAATAGGTATATATTATCATCACAAACTTTT  900

seq1  ATTAAGTATGAGGCAAACTCTTTGCACATAGCTCATGGTGATGTGTAACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTATGAGGCAAACTCTTTGCACATAGCTCATGGTGATGTGTAACT  950

seq1  TGGTGTATCTCCAAGGCTGGGCTCAAGTTCATGATCTTCCTGCCATAGTT  1000
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGGTGTATCTCC-AGGCTGGGCTCAAGTTCATGATCTTCCTGCCATAGTT  999

seq1  TCCTGAATATTGGTATTATAGGCAGGAACCATTGTGCTTGGCTTCACAGT  1050
      ||||||||||||||| |||||||||| ||||||||||||||| |||||||
seq2  TCCTGAATATTGGTA-TATAGGCAGG-ACCATTGTGCTTGGC-TCACAGT  1046

seq1  CTTTTTTGAGA--GATATATAATTCATTAACCAAATAAGATTTATTGTTT  1098
      ||||||||| |   | ||||||||||||| |  ||||  ||||| || ||
seq2  CTTTTTTGAAAAGAAAATATAATTCATTATC--AATAGAATTTAATG-TT  1093

seq1  ATTCCCAACTTTATTACTCATCCATGTAACAGTTACTTGATCACAT  1144
      ||| ||||| |||||||||||| |||||||||||||||||||||||
seq2  ATT-CCAAC-TTATTACTCATCAATGTAACAGTTACTTGATCACAT  1137