BAC Information

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BAC

Clone NameB6Ng01-222K02
Chromosome16 (Build37)
Map Location 40,572,560 - 40,573,745
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667400
Downstream geneEG667450, Lsamp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222K02.bB6Ng01-222K02.g
ACCGA037597GA037598
length1,1951,190
definitionB6Ng01-222K02.b B6Ng01-222K02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttctttggcagcctcaccatatctcagaggctcttccgttctgc
tcctttggaattggactgagttgcttaaaaaagaaaattccacataaaca
gaggaagcggcaacaaaacctttcttgcatggggattaaagtacagtcca
gggtccacaattctagaagagccttagtaatattaactcagctccagaaa
aacttttaagaaatgtctgtatggaagatatttatataggctggtagctt
aagacccccaaaaagattttgagaattatatttgatattctggtattttc
aaaacctgtactatatagggaagagtatataaaatatcatgttgttgcaa
agtgcttagttgatcttagatctgctgtgggtctttatcttttgttgttg
cattttttctcattaaaaataatcaatatcacaaatgccatacactgaga
atatagaatgatattttttgcccatactggtgaggaaatacttgcacgtc
agtatcatgacccactataaatgacaggtgactactaatgtggcacagag
atgggctgacacaaagcaggaaatgttatcattaaatcattgaatcctct
gtgagttctgtgtctacctatttgggtcttgttctcttggcttctttcga
tataacaagataaaacttaaaagttaatgttttgttcaagaacaatcctt
gtttgaatctaaatatctcccaaggcattctatatatatttttttctatt
ttcttttgaggagtttctaatcatatggctttcatgaaagtcttagatgt
gaatcacttatatttacaggaaacacaaaggagaaattgctaaggaccat
gacccttagctgtgtgaggtcaaatcctatggttgacctattggttatct
tctcaagaaagttaatgggggagtcctgttgtactatacagagaatgaaa
atgaacctttcaaagaaaggtgatttgttcttgtgttagtgattacgtgg
tagagtccagattttccagaagcagatctttgcctgatcagtgttgtttc
agccacaggctaggtacccagggaactgttaaagtagaatcagcttgtct
tgagtgcagcaatctttatgcctctggcttccttgaattgccttgatcga
agcagtagcactactctgggtctaggatctttactcttggtaaga

gaattcagtaagaatgttgcttattcagtgacattcagaattgcctctat
tactgtaagagatagtgaaagaaatcaggctttactatctactacataga
gttagaaatctcagggcaagcttagcaatgtaagtttagaattcttatta
aagttatgtatggcagactacattagttattagtaagatgtccccccaca
ctatcacttagaataaaagccaagttgctcccatatacaggaatttacaa
tggtttaggaagtagatcgggctgtggttttagagtattgcattattcat
gagaaggttagctagagcggaactccctaattagaaccatgacttgggtg
tgaaagcccttgccctaggagtgtaaagacctcactcctggattctaaga
ctatagctgaccttagatagagctcactttgtctcagttgttttattgcc
cagttcctgccagtctttgtgtttacattcctctgttttgtaccttgctg
atgtgtcacctaacttccctattttcttctgtataaaaagtttgatgcta
aatttgaaaaattacattcagattctacacacacacacacaaaaaagaat
ggtatctagtgctggcaagattgttcaataggtaagggtgcttaatgaca
attgtaacaacctaagttcaatcttggtatctacatggtagaaagacagg
atcatatcaaatatgttgccctctgaaatccatttagatgcactcaccca
cccacacagaaataactataatagatttaaacaaaagaaattttacctat
aatgaaagactatgaaacatatttcttgagagatgaatttatgtttttct
tttttaacattgtagcatggttctggagccaacataggtatacaacagca
gaaagatgaataaagaatttttgctacaatgtaacaattttcagccatag
agaagaataaaatttaaacatattcaggaaaccaggtaggctcaccacaa
aactctctctctatatgtccctagaatcaatcccagtctcatgctcagtt
aggcaacagaaacaacattgcagcattccctgcccatccaatctctggtg
tatccacagttcttcaagtctaactcatacctactactgcgtgccaagta
agccacacacccaaatagggcgcatttccctggcagtcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_40572560_40573745
seq2: B6Ng01-222K02.b_46_1240

seq1  GAATTCTTCTTTGGCAGCCTCACCATATCTCAGAGGCTCTTCCGTTCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTTGGCAGCCTCACCATATCTCAGAGGCTCTTCCGTTCTGC  50

seq1  TCCTTTGGAATTGGACTGAGTTGCTTAAAAAAGAAAATTCCACATAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGGAATTGGACTGAGTTGCTTAAAAAAGAAAATTCCACATAAACA  100

seq1  GAGGAAGCGGCAACAAAACCTTTCTTGCATGGGGATTAAAGTACAGTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGCGGCAACAAAACCTTTCTTGCATGGGGATTAAAGTACAGTCCA  150

seq1  GGGTCCACAATTCTAGAAGAGCCTTAGTAATATTAACTCAGCTCCAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCACAATTCTAGAAGAGCCTTAGTAATATTAACTCAGCTCCAGAAA  200

seq1  AACTTTTAAGAAATGTCTGTATGGAAGATATTTATATAGGCTGGTAGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTAAGAAATGTCTGTATGGAAGATATTTATATAGGCTGGTAGCTT  250

seq1  AAGACCCCCAAAAAGATTTTGAGAATTATATTTGATATTCTGGTATTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCCCCAAAAAGATTTTGAGAATTATATTTGATATTCTGGTATTTTC  300

seq1  AAAACCTGTACTATATAGGGAAGAGTATATAAAATATCATGTTGTTGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTGTACTATATAGGGAAGAGTATATAAAATATCATGTTGTTGCAA  350

seq1  AGTGCTTAGTTGATCTTAGATCTGCTGTGGGTCTTTATCTTTTGTTGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTAGTTGATCTTAGATCTGCTGTGGGTCTTTATCTTTTGTTGTTG  400

seq1  CATTTTTTCTCATTAAAAATAATCAATATCACAAATGCCATACACTGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTCTCATTAAAAATAATCAATATCACAAATGCCATACACTGAGA  450

seq1  ATATAGAATGATATTTTTTGCCCATACTGGTGAGGAAATACTTGCACGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGAATGATATTTTTTGCCCATACTGGTGAGGAAATACTTGCACGTC  500

seq1  AGTATCATGACCCACTATAAATGACAGGTGACTACTAATGTGGCACAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCATGACCCACTATAAATGACAGGTGACTACTAATGTGGCACAGAG  550

seq1  ATGGGCTGACACAAAGCAGGAAATGTTATCATTAAATCATTGAATCCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTGACACAAAGCAGGAAATGTTATCATTAAATCATTGAATCCTCT  600

seq1  GTGAGTTCTGTGTCTACCTATTTGGGTCTTGTTCTCTTGGCTTCTTTCGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTCTGTGTCTACCTATTTGGGTCTTGTTCTCTTGGCTTCTTTCGA  650

seq1  TATAACAAGATAAAACTTAAAAGTTAATGTTTTGTTCAAGAACAATCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACAAGATAAAACTTAAAAGTTAATGTTTTGTTCAAGAACAATCCTT  700

seq1  GTTTGAATCTAAATATCTCCCAAGGCATTCTATATATATTTTTTTCTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAATCTAAATATCTCCCAAGGCATTCTATATATATTTTTTTCTATT  750

seq1  TTCTTTTGAGGAGTTTCTAATCATATGGCTTTCAGGAAAGTCTTAGATGT  800
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTCTTTTGAGGAGTTTCTAATCATATGGCTTTCATGAAAGTCTTAGATGT  800

seq1  GAATCACTTATATTTACAGGAAACAC-AAGGAGAAATTGCTAAGGACCAT  849
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAATCACTTATATTTACAGGAAACACAAAGGAGAAATTGCTAAGGACCAT  850

seq1  GACCCTTAGCTGTGTGAGGTCAAATCCTATGGTTGACCTATTGGTTATCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTTAGCTGTGTGAGGTCAAATCCTATGGTTGACCTATTGGTTATCT  900

seq1  TCTCAAGAAAGTTAAT-GGGGAGTCCTGTTGTACTATACAGAGAATGAAA  948
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCTCAAGAAAGTTAATGGGGGAGTCCTGTTGTACTATACAGAGAATGAAA  950

seq1  ATGAACC-TTCAAAG-AAGGTGATTTGTTC-TGTGTTAGTGATTACGTGG  995
      ||||||| ||||||| |||||||||||||| |||||||||||||||||||
seq2  ATGAACCTTTCAAAGAAAGGTGATTTGTTCTTGTGTTAGTGATTACGTGG  1000

seq1  TAGAGTCCAGATTTTCCAGAAGCAGATC-TTGCCTGATCAGTGTTG-TTC  1043
      |||||||||||||||||||||||||||| ||||||||||||||||| |||
seq2  TAGAGTCCAGATTTTCCAGAAGCAGATCTTTGCCTGATCAGTGTTGTTTC  1050

seq1  AGCCACAGGGCTAGGTAACCAGGGACCTGTT-AAGTAGATCAAGCTTGTC  1092
      ||||||| ||||||||| ||||||| ||||| |||||||   ||||||||
seq2  AGCCACA-GGCTAGGTACCCAGGGAACTGTTAAAGTAGAATCAGCTTGTC  1099

seq1  TTGAGTTGCAGCAATC-TTATGCCTCTGCCT--CCTGAA-TGCCTGGATC  1138
      ||||| |||||||||| ||||||||||| ||  | |||| ||||| ||||
seq2  TTGAG-TGCAGCAATCTTTATGCCTCTGGCTTCCTTGAATTGCCTTGATC  1148

seq1  AGAGCAGTGTAGCACTACTCTGGGTCTAAGATCTTACCTCTT-GTAAGA  1186
        ||||  |||||||||||||||||||| ||||||  ||||| ||||||
seq2  GAAGCA--GTAGCACTACTCTGGGTCTAGGATCTTTACTCTTGGTAAGA  1195


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