BAC Information

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BAC

Clone NameB6Ng01-223B03
Chromosome16 (Build37)
Map Location 29,407,749 - 29,526,309
singlet/doubletdoublet
Overlap geneAtp13a4
Upstream geneFgf12, 1600021P15Rik, EG666717, Hrasls, Atp13a5
Downstream geneOpa1, Gm1968, LOC100043102, 9030404E10Rik, Hes1, EG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3, Tmem44
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223B03.bB6Ng01-223B03.g
ACCGA037915GA037916
length1,104336
definitionB6Ng01-223B03.b B6Ng01-223B03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,525,196 - 29,526,309)(29,407,749 - 29,408,092)
sequence
gaattcactattttcctttgctgggtattcttttcttgtgtgtgtgtttg
aaattaaatttgtaatcacagtgcacaattttatcttgtcctccatttag
cactctcatgcaccattcttctggccttaataaaatctttaacagacatt
atttaatagcgatataatagtctttaataatggcccttctgttgtactca
cagctggtggctgtttatcacaatgagaaactcaagtaaacatctccaga
tataatttttgtctgtgtcttgtataagctctaacagagagcacgtttta
gttgctgaatacgtcaccccattgaggtctgcgcacctgtaggctgttca
ccttttaattcctcttccaacagtacagaccgagatgaaatccggcctct
cctcatcatttgtggcctaactgccatggcttgataagattttgctaccc
agaaattccagatttgctgttcaccagtctagaatgaagagcgaccatgc
gacaggggattgaaaagtttctctctgacttaaggatctttccagaaaag
gacctcatgttcatataaagggttcccacagcagcagacactgtaggatg
gggctccagcaaccaactggaggtcttcgtctttctcatgtgtagttctc
ccaaccgtggccaccgtctctatccaaggagaaagagacaacaggctaca
attcctccaaattaccttggtataaaatttaatcccctatggtcacagct
gcaatatttattctctaatgaagtcttgggctatgtggctttgcgatttg
tgagaagggaaattctatcatcttaattctaaaatttttacctacggtct
tagtgcagagaaaatttaaactttgcataccaacaatattttagaaattg
ctttgatggcatccatgaataaaggaatgaggtcaattgaaaacagaaaa
tggcacgtacataagtgtggtaacgttcgttatcacaagacatatttttt
agaattattttgagacttattgtctactgcttactgctgtagctctgatg
cttagagtgctggcaactgtcagcatacagtagatattctgaagaatagt
gctg
gaattcatcatgggaagcatcacatctattgacggatatattctaggtta
actctgattacatttacttgacttttatattcaaatactgcataatgaat
ggaagcgctcgtttctatacaacgggtctcacctctacaatatccgtgca
cgtccttgagggggagcctttttttacaactatgttacatttcaattagt
acaggtggtaaatatatatatatatatatatatatatatatatatatata
tatacacatatatacatatatacatatacatatatatgtgtgtgtatgtg
tgtatatatatatatatatatatatatatatacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_29525196_29526309
seq2: B6Ng01-223B03.b_45_1148 (reverse)

seq1  CAGCACTTATCTCAAGAATATCTACTGTATGCTGAACAGTTGCCAGGCAC  50
      |||||||  |||  |||||||||||||||||||| |||||||||| ||||
seq2  CAGCACTATTCTTCAGAATATCTACTGTATGCTG-ACAGTTGCCA-GCAC  48

seq1  CTCCTAAGCATCAGAGCTACAGCAGTAAGCAGTAGAACAATAAGTCCTTC  100
         |||||||||||||||||||||||||||||||| ||||||||||  ||
seq2  --TCTAAGCATCAGAGCTACAGCAGTAAGCAGTAG-ACAATAAGTC--TC  93

seq1  AAAATTAATTCT-AAAAATATGTCCTTGTGATAACGAAACGTTACCACAC  149
      |||| ||||||| |||||||||| |||||||||||| |||||||||||||
seq2  AAAA-TAATTCTAAAAAATATGT-CTTGTGATAACG-AACGTTACCACAC  140

seq1  TTATGTACGTGCCATTTTTCTGTTTTCAATTGACCTCATTCCTTTATTCA  199
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTATGTACGTGCCA-TTTTCTGTTTTCAATTGACCTCATTCCTTTATTCA  189

seq1  TGGATGCCATCAAAGCAATTTCTAAAATATTGTTGGTATGCAAAGTTTAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCCATCAAAGCAATTTCTAAAATATTGTTGGTATGCAAAGTTTAA  239

seq1  ATTTTCTCTGCACTAAGACCGTAGGTAAAAATTTTAGAATTAAGATGATA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCTGCACTAAGACCGTAGGTAAAAATTTTAGAATTAAGATGATA  289

seq1  GAATTTCCCTTCTCACAAATCGCAAAGCCACATAGCCCAAGACTTCATTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCCCTTCTCACAAATCGCAAAGCCACATAGCCCAAGACTTCATTA  339

seq1  GAGAATAAATATTGCAGCTGTGACCATAGGGGATTAAATTTTATACCAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATAAATATTGCAGCTGTGACCATAGGGGATTAAATTTTATACCAAG  389

seq1  GTAATTTGGAGGAATTGTAGCCTGTTGTCTCTTTCTCCTTGGATAGAGAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTGGAGGAATTGTAGCCTGTTGTCTCTTTCTCCTTGGATAGAGAC  439

seq1  GGTGGCCACGGTTGGGAGAACTACACATGAGAAAGACGAAGACCTCCAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCCACGGTTGGGAGAACTACACATGAGAAAGACGAAGACCTCCAGT  489

seq1  TGGTTGCTGGAGCCCCATCCTACAGTGTCTGCTGCTGTGGGAACCCTTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGCTGGAGCCCCATCCTACAGTGTCTGCTGCTGTGGGAACCCTTTA  539

seq1  TATGAACATGAGGTCCTTTTCTGGAAAGATCCTTAAGTCAGAGAGAAACT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAACATGAGGTCCTTTTCTGGAAAGATCCTTAAGTCAGAGAGAAACT  589

seq1  TTTCAATCCCCTGTCGCATGGTCGCTCTTCATTCTAGACTGGTGAACAGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATCCCCTGTCGCATGGTCGCTCTTCATTCTAGACTGGTGAACAGC  639

seq1  AAATCTGGAATTTCTGGGTAGCAAAATCTTATCAAGCCATGGCAGTTAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGGAATTTCTGGGTAGCAAAATCTTATCAAGCCATGGCAGTTAGG  689

seq1  CCACAAATGATGAGGAGAGGCCGGATTTCATCTCGGTCTGTACTGTTGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAATGATGAGGAGAGGCCGGATTTCATCTCGGTCTGTACTGTTGGA  739

seq1  AGAGGAATTAAAAGGTGAACAGCCTACAGGTGCGCAGACCTCAATGGGGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAATTAAAAGGTGAACAGCCTACAGGTGCGCAGACCTCAATGGGGT  789

seq1  GACGTATTCAGCAACTAAAACGTGCTCTCTGTTAGAGCTTATACAAGACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTATTCAGCAACTAAAACGTGCTCTCTGTTAGAGCTTATACAAGACA  839

seq1  CAGACAAAAATTATATCTGGAGATGTTTACTTGAGTTTCTCATTGTGATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAAAAATTATATCTGGAGATGTTTACTTGAGTTTCTCATTGTGATA  889

seq1  AACAGCCACCAGCTGTGAGTACAACAGAAGGGCCATTATTAAAGACTATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCACCAGCTGTGAGTACAACAGAAGGGCCATTATTAAAGACTATT  939

seq1  ATATCGCTATTAAATAATGTCTGTTAAAGATTTTATTAAGGCCAGAAGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCGCTATTAAATAATGTCTGTTAAAGATTTTATTAAGGCCAGAAGAA  989

seq1  TGGTGCATGAGAGTGCTAAATGGAGGACAAGATAAAATTGTGCACTGTGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCATGAGAGTGCTAAATGGAGGACAAGATAAAATTGTGCACTGTGA  1039

seq1  TTACAAATTTAATTTCAAACACACACACAAGAAAAGAATACCCAGCAAAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAATTTAATTTCAAACACACACACAAGAAAAGAATACCCAGCAAAG  1089

seq1  GAAAATAGTGAATTC  1114
      |||||||||||||||
seq2  GAAAATAGTGAATTC  1104

seq1: chr16_29407749_29408092
seq2: B6Ng01-223B03.g_66_401

seq1  GAATTCATCATGGGAAGCATCACATCTATTGACGGATATATTCTAGGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCATGGGAAGCATCACATCTATTGACGGATATATTCTAGGTTA  50

seq1  ACTCTGATTACATTTACTTGACTTTTATATTCAAATACTGCATAATGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGATTACATTTACTTGACTTTTATATTCAAATACTGCATAATGAAT  100

seq1  GGAAGCGCTCGTTTCTATACAACGGGTCTCACCTCTACAATATCCGTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCGCTCGTTTCTATACAACGGGTCTCACCTCTACAATATCCGTGCA  150

seq1  CGTCCTTGAGGGGGAGCCTTTTTTTACAACTATGTTACATTTCAATTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCTTGAGGGGGAGCCTTTTTTTACAACTATGTTACATTTCAATTAGT  200

seq1  ACAGGTGGTAAATATATATATATATATATATATATATATATATATATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTGGTAAATATATATATATATATATATATATATATATATATATATA  250

seq1  TATACACATATATACATATATACATATACATATATATGTGTGTGTATGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACATATATACATATATACATATACATATATATGTGTGTGTATGTG  300

seq1  TGTATATATATATATATATATATATATATATATATATATACACA  344
      |||||||||||||||||||||||||||||||| | |        
seq2  TGTATATATATATATATATATATATATATATACACA--------  336