BAC Information

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BAC

Clone NameB6Ng01-223G09
Chromosome16 (Build37)
Map Location 72,879,417 - 72,991,991
singlet/doubletdoublet
Overlap geneRobo1
Upstream genenone
Downstream geneLOC100039310, LOC100039318, LOC100039326, Robo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223G09.bB6Ng01-223G09.g
ACCGA038153GA038154
length6621,080
definitionB6Ng01-223G09.b B6Ng01-223G09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,879,417 - 72,880,078)(72,990,916 - 72,991,991)
sequence
gaattctttagtaaataaataaatcagtactatcatcttgcctctaaaaa
tcagtagcagagtgtgaaaagaaaattctgtccaactaaacaagcacact
tgtagttgacagtaagagacgctgtgttatcgtttgtttgtcacatggag
aagatgacaccatgagtggtcacattacagtgatcttatgacagtgacca
actcgtgcatgattactaattcaatgtttgatatgtcgcttaaataaaac
tgggacatctgtaaatttcaaattttgtccctgtggttcctcaaaaacag
ggtcttgtgactacctggggacttagcctcagttcttctaccagagtgag
taaagaaaaaagtagagggcagtatgcagaatcatctttttattaaagct
ctgatgcagactttagttcaaaatgcacaagtaggaggggataagcaagg
aagatttaagggagtagggaagggatagagaggggaacagaattcccagg
cataatcaaggcatacacatggagggacccatggttccagccacatatgt
agcagaggatggcattgtctggtatcaataggaggagaggccattggacc
tgtgaaggctcaatgccccagtgtaggggaatcaagggtggagaggtggg
agtgggaacacc

gaattcctgcacgtcacacctcccgggagatgccgtgagaccacaccaaa
actcctcgcgggcaggcaatgtcacactcaggcttgacgttgtataggca
aatgcgtgctttgcgccgatctctttaaaaatatgccctatcttctttta
ttaaaatctctggcattatttttggggggaggggcataggccatttaaga
gaacacaacatacttttaaaaagtatgcatagagaaagaattacaaagga
aaaaagacttgtcaaagcgagcgaggacagcagaatcaagggctcattaa
attacatttgtcattatgtttcacgattgcggcctcaacagcagcttccc
attgaaaagacaatggtattagttggatagatctagggcagggggattga
gggacataggtgttgtactggcatgctcaaaggacattagtgaaggaaaa
gaatgctttcagagcgaggagggttttgtgtctctagctctcaagacaac
agagggggtttaacctgctacaattacacagcgaaggcacttggctgtag
taggaaatgctggagttcagaactggatgctcacccagtcaaggtgttga
tggaggtccttcgaacagaaaatacaaggaactccgagtttaagtgtaac
tcatgtttcctaactcaaatcagatttcaaagacacactgcaagggcacc
ctcctccttccccagtcacccgcccccaagagcttctcctctacacggat
ctgaagtcaaggggttcatatggtcaacacgcggctgttaccgttccaca
tacacaacgtgccacactgtcttcgagatggccctaagccttttgttgtt
tcataggcaggggacactgacagaatgcgtgtctggaaaacaaaaagtcc
tggtgacaacgcctagcctagggacattttacacatggagaggggggctg
cagagccgctcaggattccgttgcacagactgagacaatctggctcatgt
cttttgtcagctcgattgtgagccagaagttccagagcctttctaactgg
cgttgagaaggcgatttgaggtttccactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_72879417_72880078
seq2: B6Ng01-223G09.b_43_704

seq1  GAATTCTTTAGTAAATAAATAAATCAGTACTATCATCTTGCCTCTAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGTAAATAAATAAATCAGTACTATCATCTTGCCTCTAAAAA  50

seq1  TCAGTAGCAGAGTGTGAAAAGAAAATTCTGTCCAACTAAACAAGCACACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGCAGAGTGTGAAAAGAAAATTCTGTCCAACTAAACAAGCACACT  100

seq1  TGTAGTTGACAGTAAGAGACGCTGTGTTATCGTTTGTTTGTCACATGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTGACAGTAAGAGACGCTGTGTTATCGTTTGTTTGTCACATGGAG  150

seq1  AAGATGACACCATGAGTGGTCACATTACAGTGATCTTATGACAGTGACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGACACCATGAGTGGTCACATTACAGTGATCTTATGACAGTGACCA  200

seq1  ACTCGTGCATGATTACTAATTCAATGTTTGATATGTCGCTTAAATAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGTGCATGATTACTAATTCAATGTTTGATATGTCGCTTAAATAAAAC  250

seq1  TGGGACATCTGTAAATTTCAAATTTTGTCCCTGTGGTTCCTCAAAAACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACATCTGTAAATTTCAAATTTTGTCCCTGTGGTTCCTCAAAAACAG  300

seq1  GGTCTTGTGACTACCTGGGGACTTAGCCTCAGTTCTTCTACCAGAGTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGTGACTACCTGGGGACTTAGCCTCAGTTCTTCTACCAGAGTGAG  350

seq1  TAAAGAAAAAAGTAGAGGGCAGTATGCAGAATCATCTTTTTATTAAAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAAAAAGTAGAGGGCAGTATGCAGAATCATCTTTTTATTAAAGCT  400

seq1  CTGATGCAGACTTTAGTTCAAAATGCACAAGTAGGAGGGGATAAGCAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGCAGACTTTAGTTCAAAATGCACAAGTAGGAGGGGATAAGCAAGG  450

seq1  AAGATTTAAGGGAGTAGGGAAGGGATAGAGAGGGGAACAGAATTCCCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTAAGGGAGTAGGGAAGGGATAGAGAGGGGAACAGAATTCCCAGG  500

seq1  CATAATCAAGGCATACACATGGAGGGACCCATGGTTCCAGCCACATATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATCAAGGCATACACATGGAGGGACCCATGGTTCCAGCCACATATGT  550

seq1  AGCAGAGGATGGCATTGTCTGGTATCAATAGGAGGAGAGGCCATTGGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGGATGGCATTGTCTGGTATCAATAGGAGGAGAGGCCATTGGACC  600

seq1  TGTGAAGGCTCAATGCCCCAGTGTAGGGGAATCAAGGGTGGAGAGGTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGGCTCAATGCCCCAGTGTAGGGGAATCAAGGGTGGAGAGGTGGG  650

seq1  AGTGGGAACACC  662
      ||||||||||||
seq2  AGTGGGAACACC  662


seq1: chr16_72990916_72991991
seq2: B6Ng01-223G09.g_69_1148 (reverse)

seq1  AAGTGGAA--CTCAAAT-GCC-TCTCAACG-CAGTTAGAAAGGGCTCTGG  45
      ||||||||  ||||||| ||| |||||||| |||||||||| ||||||||
seq2  AAGTGGAAACCTCAAATCGCCTTCTCAACGCCAGTTAGAAA-GGCTCTGG  49

seq1  GAC-TCTGGCTCACAATCGAGCCTGACAAAAGACCTGAGCCAGATTGTCC  94
       || ||||||||||||||||| |||||||||||| ||||||||||||| |
seq2  AACTTCTGGCTCACAATCGAG-CTGACAAAAGACATGAGCCAGATTGT-C  97

seq1  TCAGTCCTGTGCAACGGAATCCCTGAGCGGCTCTGCAG-CCCCCTCTCCA  143
      ||||| |||||||||||||| ||||||||||||||||| |||||||||||
seq2  TCAGT-CTGTGCAACGGAAT-CCTGAGCGGCTCTGCAGCCCCCCTCTCCA  145

seq1  TGTGT-AAATGTCCCTAGGCTAGGCGTTGTCACCAGGACTTTTTGTTTTC  192
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAAAATGTCCCTAGGCTAGGCGTTGTCACCAGGACTTTTTGTTTTC  195

seq1  CAGACACGCATTCTGTCAGTGT-CCCTGCCTATGAAACAACAAAAGGCTT  241
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CAGACACGCATTCTGTCAGTGTCCCCTGCCTATGAAACAACAAAAGGCTT  245

seq1  AGGGCCATCTCGAAGACAGTGTGGCACGTTGTGTATGTGGAACGGTAACA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCATCTCGAAGACAGTGTGGCACGTTGTGTATGTGGAACGGTAACA  295

seq1  GCCGCGTGTTGACCATATGAACCCCTTGACTTCAGATCCGTGTAGAGGAG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCGTGTTGACCATATGAACCCCTTGACTTCAGATCCGTGTAGAGGAG  345

seq1  AAGCTCTTGGGGGCGGGTGACTGGGGAAGGAGGAGGGTGCCCTTGCAGTG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTTGGGGGCGGGTGACTGGGGAAGGAGGAGGGTGCCCTTGCAGTG  395

seq1  TGTCTTTGAAATCTGATTTGAGTTAGGAAACATGAGTTACACTTAAACTC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTGAAATCTGATTTGAGTTAGGAAACATGAGTTACACTTAAACTC  445

seq1  GGAGTTCCTTGTATTTTCTGTTCGAAGGACCTCCATCAACACCTTGACTG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTCCTTGTATTTTCTGTTCGAAGGACCTCCATCAACACCTTGACTG  495

seq1  GGTGAGCATCCAGTTCTGAACTCCAGCATTTCCTACTACAGCCAAGTGCC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGCATCCAGTTCTGAACTCCAGCATTTCCTACTACAGCCAAGTGCC  545

seq1  TTCGCTGTGTAATTGTAGCAGGTTAAACCCCCTCTGTTGTCTTGAGAGCT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCTGTGTAATTGTAGCAGGTTAAACCCCCTCTGTTGTCTTGAGAGCT  595

seq1  AGAGACACAAAACCCTCCTCGCTCTGAAAGCATTCTTTTCCTTCACTAAT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACAAAACCCTCCTCGCTCTGAAAGCATTCTTTTCCTTCACTAAT  645

seq1  GTCCTTTGAGCATGCCAGTACAACACCTATGTCCCTCAATCCCCCTGCCC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTGAGCATGCCAGTACAACACCTATGTCCCTCAATCCCCCTGCCC  695

seq1  TAGATCTATCCAACTAATACCATTGTCTTTTCAATGGGAAGCTGCTGTTG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCTATCCAACTAATACCATTGTCTTTTCAATGGGAAGCTGCTGTTG  745

seq1  AGGCCGCAATCGTGAAACATAATGACAAATGTAATTTAATGAGCCCTTGA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCGCAATCGTGAAACATAATGACAAATGTAATTTAATGAGCCCTTGA  795

seq1  TTCTGCTGTCCTCGCTCGCTTTGACAAGTCTTTTTTCCTTTGTAATTCTT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTGTCCTCGCTCGCTTTGACAAGTCTTTTTTCCTTTGTAATTCTT  845

seq1  TCTCTATGCATACTTTTTAAAAGTATGTTGTGTTCTCTTAAATGGCCTAT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATGCATACTTTTTAAAAGTATGTTGTGTTCTCTTAAATGGCCTAT  895

seq1  GCCCCTCCCCCCAAAAATAATGCCAGAGATTTTAATAAAAGAAGATAGGG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTCCCCCCAAAAATAATGCCAGAGATTTTAATAAAAGAAGATAGGG  945

seq1  CATATTTTTAAAGAGATCGGCGCAAAGCACGCATTTGCCTATACAACGTC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTTAAAGAGATCGGCGCAAAGCACGCATTTGCCTATACAACGTC  995

seq1  AAGCCTGAGTGTGACATTGCCTGCCCGCGAGGAGTTTTGGTGTGGTCTCA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGAGTGTGACATTGCCTGCCCGCGAGGAGTTTTGGTGTGGTCTCA  1045

seq1  CGGCATCTCCCGGGAGGTGTGACGTGCAGGAATTC  1076
      |||||||||||||||||||||||||||||||||||
seq2  CGGCATCTCCCGGGAGGTGTGACGTGCAGGAATTC  1080


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