BAC Information

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BAC

Clone NameB6Ng01-223O20
Chromosome16 (Build37)
Map Location 81,999,883 - 82,151,147
singlet/doubletdoublet
Overlap genenone
Upstream geneNcam2, LOC621470, LOC435484, Pgk1-ps1
Downstream geneEG665260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223O20.bB6Ng01-223O20.g
ACCGA038535GA038536
length1,1411,114
definitionB6Ng01-223O20.b B6Ng01-223O20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,150,028 - 82,151,147)(81,999,883 - 82,000,982)
sequence
gaattctgtggcatttacagtgaagagtatggaatctttaagctggaaat
tgatttaaaaatctaaacacacacacacacacacacacacacacacacac
acacacacatactgtattttctatgaaaaagaaatgacaactcttgattg
agatatgtgagttttgaagcataagactaagttccaaggtttattccagg
actggaaaataatgtgagaatatttgagtgttgtctttgttttaaagatt
tgtaattttcatttcagttggagtataagaacatagaaactatggataga
cttctatttttttgtgtgatgggaggtgtctgtgcattcctgtgttatca
ctgtgaagctagagaaagaagtcaagtagtatttttacaaacacatgcac
gcacactcatgcacaaatgtacccacattcataaacacacacacacacac
acacacacacacacacacacacacacacacagctagatttatagttgttc
cacaatcacacttgtcaattatggatattttattatttagacttgggttc
taacttcaacaatagatgccccagtgtagtgaaatcaagggaggtgggag
tgtgtgggtgggtggaggagcaccctcatagaagcagaggaagggaggat
gtgctatgctgttttcagggagggagggaaacccgagaaaaggggataat
attttgaaatgtaaataaaaaaatactcaataaaaataaaaaaggaaaaa
aaaacaactatttttatcactaagaaaggacagatctgtattaaagaaca
aatgatggaaacacacacacacacacgcacacgcacacgcatacgcacag
gtgcacgttcaaggacaagctttggacatccatgtggtgaaccaatggca
gccagccagtgtgggtctgtgcctgagagcagctgacagaagttaggtcc
agataccaatggggcttgctgcctactgcaccagaattagagaaaagaag
ggtgaataaaactcttctcttcaacatatacacggaaaggttggacgcaa
agaacaagcctccacctgattttatttcttcctctaaccccccttggtac
cctctttaaggcaaccattttttttcctcttaggaagaaaa

gaattctttgtttagctctgagccccattttttaatggggttatctgatt
ttctggagtccaccctttttagttctttattattattattattattaaac
ctgaccacttgagtttaatctctgaaacccacacggtacaagaaaaaaca
gaattcacaaagctgtcctctgacttccagacatgccctgatatatatat
atatatatatatctcacacatagacataattatgtctatataaaataata
aaatatttttatattttttaactcaacaagcagttttcagcacaggtgca
tgctaacaaattattcctggtaaatatacacatgagaaattaggcccccc
aaaaaaggttaactaggatagatgtcatttagttgatccaagcagctata
acaaaaatgtcattactgaatcatttataaacaatagaaaaatcttgcta
acagattgagatgttgaaatataggatcagggtagcagcagatttaaagt
ttctctttacttctgtagctagatcacactttttgccacaactttgtggg
agaaagggcaaataagccacttatagcatttttttctttttagacatctc
ataaatgtatttcctgtgagaacactgacaatctcatttcaaacatttag
cacagcactccatgtttgaacaaagtcaaacacagttatgatgatccatg
atggatcttcagaaacagaggatcctagcagaatctctgtatgttttttt
ttaattaggtatttatttcatttacattttccaatgctatcccaaaagtc
ccccacacgcttccctacccactcccctagcctaccactcccgcttcttg
ggccctggcgttcccctgtcctgaggcatataaagtttgcacaacccaat
gggcctctcttttccactgatggccgattaggcccatcttctgatatata
tgcagctagtgacacgaggttccaggggggtactgggttagttcacattt
ttgtttcgacctatagggttgcagatctctttagcttcttggggtaactt
cctcagttctttatatctaatgaaatattagatcccctatctgaatttag
ggatagataaagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_82150028_82151147
seq2: B6Ng01-223O20.b_45_1185 (reverse)

seq1  TTTTCTTCCTAAGAG---AAAAAATGGTTGCC-TAAAGA-GGTACAAAGG  45
      |||||||||||||||   |||||||||||||| |||||| ||||| ||||
seq2  TTTTCTTCCTAAGAGGAAAAAAAATGGTTGCCTTAAAGAGGGTACCAAGG  50

seq1  GGGTTAAGA-GAAGAAAT-AAATCAG--TGAAGCTTG-TCTTTGC-TTCA  89
      ||| | ||| |||||||| |||||||   || ||||| ||||||| | ||
seq2  GGGGTTAGAGGAAGAAATAAAATCAGGTGGAGGCTTGTTCTTTGCGTCCA  100

seq1  ACCTTTCCGTGTATATGTTG-AGAG-AGAGTTTTATTCCCCCTTTCTTTC  137
      |||||||||||||||||||| |||| |||||||||||| ||| |||||| 
seq2  ACCTTTCCGTGTATATGTTGAAGAGAAGAGTTTTATTCACCC-TTCTTTT  149

seq1  CTCTAATTCCTGGCTGCAGTAGGCAGC-AGCCCCATTGGTATCTGGACCT  186
      |||||||| |||| ||||||||||||| ||||||||||||||||||||||
seq2  CTCTAATT-CTGG-TGCAGTAGGCAGCAAGCCCCATTGGTATCTGGACCT  197

seq1  AACTTCTGTCAGCTGCTCTCA-GCACAGACCCACACTGGCTGGCTGCC-T  234
      ||||||||||||||||||||| |||||||||||||||||||||||||| |
seq2  AACTTCTGTCAGCTGCTCTCAGGCACAGACCCACACTGGCTGGCTGCCAT  247

seq1  TGGTTCACCACATGGATGTCC-AAGCTAGTCTTTG-ACGTGCACGTGTGC  282
      ||||||||||||||||||||| ||||| ||| ||| |||||||| |||||
seq2  TGGTTCACCACATGGATGTCCAAAGCTTGTCCTTGAACGTGCACCTGTGC  297

seq1  GTGTGCGTGTGCGTGTGCGTGTGTGTGTGTGTGTTTCCATCATTTGTTCT  332
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCGTGTGCGTGTGCGTGTGTGTGTGTGTGTTTCCATCATTTGTTCT  347

seq1  TT-ATACAGATCTGTCCTTTCTTAGTGATAAAAATAGTTGTTTTTTTT--  379
      || |||||||||||||||||||||||||||||||||||||||||||||  
seq2  TTAATACAGATCTGTCCTTTCTTAGTGATAAAAATAGTTGTTTTTTTTTC  397

seq1  CCTTTTTATTTTTATTGAGTATTTTTTTTATTTACATTTC-AAATATTAT  428
      | ||||||||||||||||||| |||||||||||||||||| |||||||||
seq2  CTTTTTTATTTTTATTGAGTA-TTTTTTTATTTACATTTCAAAATATTAT  446

seq1  -CCCTTTTCTC-GGTTTCCCTCCCTCCCTG-AAACAGCATAGCACATCCT  475
       |||||||||| |||||||||||||||||| |||||||||||||||||||
seq2  CCCCTTTTCTCGGGTTTCCCTCCCTCCCTGAAAACAGCATAGCACATCCT  496

seq1  CCCTTCCTCTGCTTCTATGAGGGTGCTCCTCCACCCACCCACACACTCCC  525
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTCTGCTTCTATGAGGGTGCTCCTCCACCCACCCACACACTCCC  546

seq1  ACCTCCCTTGATTTCACTACACTGGGGCATCTATTGTTGAAGTTAGAACC  575
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCTTGATTTCACTACACTGGGGCATCTATTGTTGAAGTTAGAACC  596

seq1  CAAGTCTAAATAATAAAATATCCATAATTGACAAGTGTGATTGTGGAACA  625
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTAAATAATAAAATATCCATAATTGACAAGTGTGATTGTGGAACA  646

seq1  ACTATAAATCTAGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  675
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAAATCTAGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  696

seq1  TGTGTGTGTGTTTATGAATGTGGGTACATTTGTGCATGAGTGTGCGTGCA  725
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTTTATGAATGTGGGTACATTTGTGCATGAGTGTGCGTGCA  746

seq1  TGTGTTTGTAAAAATACTACTTGACTTCTTTCTCTAGCTTCACAGTGATA  775
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGTAAAAATACTACTTGACTTCTTTCTCTAGCTTCACAGTGATA  796

seq1  ACACAGGAATGCACAGACACCTCCCATCACACAAAAAAATAGAAGTCTAT  825
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGAATGCACAGACACCTCCCATCACACAAAAAAATAGAAGTCTAT  846

seq1  CCATAGTTTCTATGTTCTTATACTCCAACTGAAATGAAAATTACAAATCT  875
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGTTTCTATGTTCTTATACTCCAACTGAAATGAAAATTACAAATCT  896

seq1  TTAAAACAAAGACAACACTCAAATATTCTCACATTATTTTCCAGTCCTGG  925
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACAAAGACAACACTCAAATATTCTCACATTATTTTCCAGTCCTGG  946

seq1  AATAAACCTTGGAACTTAGTCTTATGCTTCAAAACTCACATATCTCAATC  975
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACCTTGGAACTTAGTCTTATGCTTCAAAACTCACATATCTCAATC  996

seq1  AAGAGTTGTCATTTCTTTTTCATAGAAAATACAGTATGTGTGTGTGTGTG  1025
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTGTCATTTCTTTTTCATAGAAAATACAGTATGTGTGTGTGTGTG  1046

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTAGATTTTTAAATCAATTTC  1075
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTAGATTTTTAAATCAATTTC  1096

seq1  CAGCTTAAAGATTCCATACTCTTCACTGTAAATGCCACAGAATTC  1120
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTAAAGATTCCATACTCTTCACTGTAAATGCCACAGAATTC  1141


seq1: chr16_81999883_82000982
seq2: B6Ng01-223O20.g_67_1180

seq1  GAATTCTTTGTTTAGCTCTGAGCCCCATTTTTTAATGGGGTTATCTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGAGCCCCATTTTTTAATGGGGTTATCTGATT  50

seq1  TTCTGGAGTCCACCCTTTTTAGTTCTTTATTATTATTATTATTATTAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGTCCACCCTTTTTAGTTCTTTATTATTATTATTATTATTAAAC  100

seq1  CTGACCACTTGAGTTTAATCTCTGAAACCCACACGGTACAAGAAAAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCACTTGAGTTTAATCTCTGAAACCCACACGGTACAAGAAAAAACA  150

seq1  GAATTCACAAAGCTGTCCTCTGACTTCCAGACATGCCCTGATATATATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAAGCTGTCCTCTGACTTCCAGACATGCCCTGATATATATAT  200

seq1  ATATATATATATCTCACACATAGACATAATTATGTCTATATAAAATAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATCTCACACATAGACATAATTATGTCTATATAAAATAATA  250

seq1  AAATATTTTTATATTTTTTAACTCAACAAGCAGTTTTCAGCACAGGTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTTTATATTTTTTAACTCAACAAGCAGTTTTCAGCACAGGTGCA  300

seq1  TGCTAACAAATTATTCCTGGTAAATATACACATGAGAAATTAGGCCCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAACAAATTATTCCTGGTAAATATACACATGAGAAATTAGGCCCCCC  350

seq1  AAAAAAGGTTAACTAGGATAGATGTCATTTAGTTGATCCAAGCAGCTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGGTTAACTAGGATAGATGTCATTTAGTTGATCCAAGCAGCTATA  400

seq1  ACAAAAATGTCATTACTGAATCATTTATAAACAATAGAAAAATCTTGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATGTCATTACTGAATCATTTATAAACAATAGAAAAATCTTGCTA  450

seq1  ACAGATTGAGATGTTGAAATATAGGATCAGGGTAGCAGCAGATTTAAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTGAGATGTTGAAATATAGGATCAGGGTAGCAGCAGATTTAAAGT  500

seq1  TTCTCTTTACTTCTGTAGCTAGATCACACTTTTTGCCACAACTTTGTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTACTTCTGTAGCTAGATCACACTTTTTGCCACAACTTTGTGGG  550

seq1  AGAAAGGGCAAATAAGCCACTTATAGCATTTTTTTCTTTTTAGACATCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGGCAAATAAGCCACTTATAGCATTTTTTTCTTTTTAGACATCTC  600

seq1  ATAAATGTATTTCCTGTGAGAACACTGACAATCTCATTTCAAACATTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGTATTTCCTGTGAGAACACTGACAATCTCATTTCAAACATTTAG  650

seq1  CACAGCACTCCATGTTTGAAACAAAGTCAAACACAGTTATGATGATCCAT  700
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CACAGCACTCCATGTTTG-AACAAAGTCAAACACAGTTATGATGATCCAT  699

seq1  GATGGATCTTCAGAAACAGAGGATCCTAGCAGAATCTCTGTATGTTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATCTTCAGAAACAGAGGATCCTAGCAGAATCTCTGTATGTTTTTT  749

seq1  TTTAATTAGGTATTTATTTCATTTACA-TTTCCAATGCTATCCCAAAAGT  799
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTTAATTAGGTATTTATTTCATTTACATTTTCCAATGCTATCCCAAAAGT  799

seq1  CCCCCACACGCTTCCCTACCCACTCCCCTAGCCTACCACTCCCGCTTCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACACGCTTCCCTACCCACTCCCCTAGCCTACCACTCCCGCTTCTT  849

seq1  -GGCCCTGGCGTTCCCCTGTCCTGAGGCATATAAAGTTTGCACAA-CCAA  897
       |||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGGCCCTGGCGTTCCCCTGTCCTGAGGCATATAAAGTTTGCACAACCCAA  899

seq1  TGGGCCTCTC-TTTCCACTGATGGCCGATTAGG-CCATCTTCTGATATAT  945
      |||||||||| |||||||||||||||||||||| ||||||||||||||||
seq2  TGGGCCTCTCTTTTCCACTGATGGCCGATTAGGCCCATCTTCTGATATAT  949

seq1  ATGCAGCTAGTGACACGAGG-TCCA-GGGGGTACT-GGTTAGTTCACATT  992
      |||||||||||||||||||| |||| ||||||||| ||||||||||||||
seq2  ATGCAGCTAGTGACACGAGGTTCCAGGGGGGTACTGGGTTAGTTCACATT  999

seq1  TTTG-TTCGACCTATAGGGTTGCAGATCTCTTTAGCTTCTT-GGGTAACT  1040
      |||| |||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTTGTTTCGACCTATAGGGTTGCAGATCTCTTTAGCTTCTTGGGGTAACT  1049

seq1  T-CTCAGTTCTTTATATCT-ATTAAATATTA-ATCCCCTATCTG-ATTTA  1086
      | ||||||||||||||||| || |||||||| |||||||||||| |||||
seq2  TCCTCAGTTCTTTATATCTAATGAAATATTAGATCCCCTATCTGAATTTA  1099

seq1  -GGATAGATAAAGAT  1100
       ||||||||||||||
seq2  GGGATAGATAAAGAT  1114


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