BAC Information

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BAC

Clone NameB6Ng01-224E15
Chromosome16 (Build37)
Map Location 92,575,416 - 92,710,774
singlet/doubletdoublet
Overlap geneRunx1
Upstream geneTmem50b, ORF28, Gart, Son, Donson, Cryzl1, LOC100040653, Itsn1, Atp5o, Mrps6, Slc5a3, Kcne2, 1190017O12Rik, 4930563D23Rik, Kcne1, Dscr1, 2410124H12Rik, Clic6
Downstream geneEG666023, LOC100040747, Setd4, LOC670912, Cbr1, EG435489, Cbr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224E15.bB6Ng01-224E15.g
ACCGA038789GA038790
length1,105560
definitionB6Ng01-224E15.b B6Ng01-224E15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,709,524 - 92,710,774)(92,575,416 - 92,575,979)
sequence
gaattcagtttgaggtcatttgtggttatgtgtgggcaaacatctgttgc
ttggctgtggctatttttctttaaagcctaccaccctgaaagaaaaagaa
aaagagtgcaaaattcttcaagtgttatttttggtcttgaccatttttaa
tcactttgaacccacttctgaggatggctttcactctgcctgtgactgta
agctgaacactagataatatctgctctcagaaatgcctctctccctgact
cactcccttcccctccaagaagctaagctccagagaattcctgctgtgtg
ctctcaggggaaggtagtaaataaaattctgctttgtgttttacaaggga
gattcagagggcagcacggttctaggcaaacctgaaacaatctttatttt
attttattttattttattttattttattttattttattttattttatttt
taaagcttaattctgacttaaccattgcttgatagagagacggacgggtt
gagttttagaagaactgacctcagaaatgttcactagctttggggcagga
tgtgtgatccaccgaagtgcgaccatttcctgaaccttaagtatacgttc
ctgatccgatatgaaagtatgtaaccgggtctgtacagacttcagtgatt
ttatggcattttaagtggaaacgcataggaattagacgtgagaattctca
ctaccaccatggctgacttcttcagctacggttttttgtttcatagacat
gaagttaaagtctgtggagtatggcaagtctctagtcccacaagcaaaca
tgatagatatggctttcgaggctacttcagatgggagagatggcccagtg
attagtgctgttggctgctcctgccagggacttgaacgcactcatcccag
cacctatgtccggcagctcaccaccacttgtgactccagtttccagggga
cctgggtaacctcttctaacatctggaggtgctgcatttccagattgtgt
gtgcatgccccccacacagacgtacccacatacaccataaaataagaatt
aaatttaaattcctctgtcatgataactttcctctctcccttctccctcc
ccccc
catgcacacactgaaacatagcagcaagttatgaactgctacgggcttct
gtgtgtcacctctgtgtgtcacagccctttcttttccattctactgtctt
tgattccgcatcatgggaattaatccagagctaccctgtgaccttcattt
tgtaatctccctgtaggttgcacccttgttttggctcatggagcaccaaa
tccttagattgttctcacagacctactgtttgtcctcatctttctgcttc
tggcctccaccttcatcctcttctccagtctccaccctccctccagcccc
ctcctcccagccccaccctcccccaaccccacccccctcatcccccacca
agcctccatgtcctctccagttccctcacttgtgacactatgcacacttc
agagagagactctctctccagctgtgtcacttctccaacctcacctgctt
acacctgtgggtcattccactctgcttcacaatgcacctcagacacagat
tccatttgccctgcctgcctgcctgctttccctccctcccttccttcctt
ccttccttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_92709524_92710774
seq2: B6Ng01-224E15.b_48_1152 (reverse)

seq1  GGGGGGGAGGGAAAGGGGTAGGAGGAAGGAGACGGAAAAGGGGAGGGAAA  50
                                                        
seq2  --------------------------------------------------  0

seq1  GGGAAAAAGGAAGGGGAAGGGTATGGAAGGGGGTGGGGAAGGGGGAAGGG  100
                                                        
seq2  --------------------------------------------------  0

seq1  GAAAAGGAAGGAGGAGGGGAAGGGGGAAGGGGAAAAGGAAGGAGGAAGGG  150
                                                        
seq2  --------------------------------------------------  0

seq1  GGATAGGGAGGGGGAGGGAGAAG---GAGAGGGAAG-TATCATGACAGGA  196
             | ||||||||||||||   |||||| ||| |||||||||||  
seq2  -------GGGGGGGAGGGAGAAGGGAGAGAGGAAAGTTATCATGACAGAG  43

seq1  GGATTTTAATTTAATTCTTATTTTAT-GTGTATGTGGGTACGTCTGTGT-  244
      | |||| ||||||||||||||||||| |||||||||||||||||||||| 
seq2  GAATTTAAATTTAATTCTTATTTTATGGTGTATGTGGGTACGTCTGTGTG  93

seq1  GGGGGCATGCACACAC-ATCTGG-AATGCAGCACCTCCAGATGTTAGAAG  292
      |||||||||||||||| |||||| ||||||||||||||||||||||||||
seq2  GGGGGCATGCACACACAATCTGGAAATGCAGCACCTCCAGATGTTAGAAG  143

seq1  AGGTTA-CCAGGTCCCCTGG-AACTGGAGTCACAGGTGGTGGTGAGCTGC  340
      |||||| ||||||||||||| ||||||||||||| |||||||||||||||
seq2  AGGTTACCCAGGTCCCCTGGAAACTGGAGTCACAAGTGGTGGTGAGCTGC  193

seq1  CGGACATGGGTGCTGGGATGAGTGCGTTC-AGTCCCTGGCAGGAGCAGCC  389
      ||||||| ||||||||||||||||||||| ||||||||||||||||||||
seq2  CGGACATAGGTGCTGGGATGAGTGCGTTCAAGTCCCTGGCAGGAGCAGCC  243

seq1  AACAGCACTAATCACTGGGCCATCTCTCCCATCTGAAGTAGCCTCGAAAG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCACTAATCACTGGGCCATCTCTCCCATCTGAAGTAGCCTCGAAAG  293

seq1  CCATATCTATCATGTTTGCTTGTGGGACTAGAGACTTGCCATACTCCACA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATCTATCATGTTTGCTTGTGGGACTAGAGACTTGCCATACTCCACA  343

seq1  GACTTTAACTTCATGTCTATGAAACAAAAAACCGTAGCTGAAGAAGTCAG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTAACTTCATGTCTATGAAACAAAAAACCGTAGCTGAAGAAGTCAG  393

seq1  CCATGGTGGTAGTGAGAATTCTCACGTCTAATTCCTATGCGTTTCCACTT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTGGTAGTGAGAATTCTCACGTCTAATTCCTATGCGTTTCCACTT  443

seq1  AAAATGCCATAAAATCACTGAAGTCTGTACAGACCCGGTTACATACTTTC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCCATAAAATCACTGAAGTCTGTACAGACCCGGTTACATACTTTC  493

seq1  ATATCGGATCAGGAACGTATACTTAAGGTTCAGGAAATGGTCGCACTTCG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCGGATCAGGAACGTATACTTAAGGTTCAGGAAATGGTCGCACTTCG  543

seq1  GTGGATCACACATCCTGCCCCAAAGCTAGTGAACATTTCTGAGGTCAGTT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATCACACATCCTGCCCCAAAGCTAGTGAACATTTCTGAGGTCAGTT  593

seq1  CTTCTAAAACTCAACCCGTCCGTCTCTCTATCAAGCAATGGTTAAGTCAG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAAAACTCAACCCGTCCGTCTCTCTATCAAGCAATGGTTAAGTCAG  643

seq1  AATTAAGCTTTAAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGCTTTAAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAA  693

seq1  ATAAAATAAAATAAAATAAAGATTGTTTCAGGTTTGCCTAGAACCGTGCT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAAAATAAAATAAAGATTGTTTCAGGTTTGCCTAGAACCGTGCT  743

seq1  GCCCTCTGAATCTCCCTTGTAAAACACAAAGCAGAATTTTATTTACTACC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTGAATCTCCCTTGTAAAACACAAAGCAGAATTTTATTTACTACC  793

seq1  TTCCCCTGAGAGCACACAGCAGGAATTCTCTGGAGCTTAGCTTCTTGGAG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTGAGAGCACACAGCAGGAATTCTCTGGAGCTTAGCTTCTTGGAG  843

seq1  GGGAAGGGAGTGAGTCAGGGAGAGAGGCATTTCTGAGAGCAGATATTATC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGGAGTGAGTCAGGGAGAGAGGCATTTCTGAGAGCAGATATTATC  893

seq1  TAGTGTTCAGCTTACAGTCACAGGCAGAGTGAAAGCCATCCTCAGAAGTG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTCAGCTTACAGTCACAGGCAGAGTGAAAGCCATCCTCAGAAGTG  943

seq1  GGTTCAAAGTGATTAAAAATGGTCAAGACCAAAAATAACACTTGAAGAAT  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAAAGTGATTAAAAATGGTCAAGACCAAAAATAACACTTGAAGAAT  993

seq1  TTTGCACTCTTTTTCTTTTTCTTTCAGGGTGGTAGGCTTTAAAGAAAAAT  1189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCACTCTTTTTCTTTTTCTTTCAGGGTGGTAGGCTTTAAAGAAAAAT  1043

seq1  AGCCACAGCCAAGCAACAGATGTTTGCCCACACATAACCACAAATGACCT  1239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAGCCAAGCAACAGATGTTTGCCCACACATAACCACAAATGACCT  1093

seq1  CAAACTGAATTC  1251
      ||||||||||||
seq2  CAAACTGAATTC  1105

seq1: chr16_92575416_92575979
seq2: B6Ng01-224E15.g_69_634

seq1  GAATTCCATGCACACACTGAAACATAGCAGCAAGTTATGAACTGCTACGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCACACACTGAAACATAGCAGCAAGTTATGAACTGCTACGG  50

seq1  GCTTCTGTGTGTCACCTCTGTGTGTCACAGCCCTTTCTTTTCCATTCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGTGTGTCACCTCTGTGTGTCACAGCCCTTTCTTTTCCATTCTAC  100

seq1  TGTCTTTGATTCCGCATCATGGGAATTAATCCAGAGCTACCCTGTGACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTGATTCCGCATCATGGGAATTAATCCAGAGCTACCCTGTGACCT  150

seq1  TCATTTTGTAATCTCCCTGTAGGTTGCACCCTTGTTTTGGCTCATGGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTGTAATCTCCCTGTAGGTTGCACCCTTGTTTTGGCTCATGGAGC  200

seq1  ACCAAATCCTTAGATTGTTCTCACAGACCTACTGTTTGTCCTCATCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATCCTTAGATTGTTCTCACAGACCTACTGTTTGTCCTCATCTTTC  250

seq1  TGCTTCTGGCCTCCACCTTCATCCTCTTCTCCAGTCTCCACCCTCCCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTGGCCTCCACCTTCATCCTCTTCTCCAGTCTCCACCCTCCCTCC  300

seq1  AGCCCCCTCCTCCCAGCCCCACCCTCCCCCAACCCCACCCCCCTCATCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCCTCCTCCCAGCCCCACCCTCCCCCAACCCCACCCCCCTCATCCC  350

seq1  CCACCAAGCCTCCATGTCCTCTCCAGTTCCCTCACTTGTGACACTATGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAAGCCTCCATGTCCTCTCCAGTTCCCTCACTTGTGACACTATGCA  400

seq1  CACTTCAGAGAGAGACTCTCTCTCCAGCTGTGTCACTTCTCCAACCTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCAGAGAGAGACTCTCTCTCCAGCTGTGTCACTTCTCCAACCTCAC  450

seq1  CTGCTTACACCTGTGGGTCATTCCACTCTGCTTCACAATGCACCTCAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTACACCTGTGGGTCATTCCACTCTGCTTCACAATGCACCTCAGAC  500

seq1  ACAGATTCCATTTG-CCTGCCTGCCTGCCTGC-TTCCCTCCCTCCCTTCC  548
      |||||||||||||| ||||||||||||||||| |||||||||||||||||
seq2  ACAGATTCCATTTGCCCTGCCTGCCTGCCTGCTTTCCCTCCCTCCCTTCC  550

seq1  TTCCTTCCTTCCTTCC  564
      ||||||||||||||||
seq2  TTCCTTCCTTCCTTCC  566