BAC Information

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BAC

Clone NameB6Ng01-224F12
Chromosome16 (Build37)
Map Location 92,817,266 - 93,007,317
singlet/doubletdoublet
Overlap geneEG666023
Upstream geneItsn1, Atp5o, Mrps6, Slc5a3, Kcne2, 1190017O12Rik, 4930563D23Rik, Kcne1, Dscr1, 2410124H12Rik, Clic6, Runx1
Downstream geneLOC100040747, Setd4, LOC670912, Cbr1, EG435489, Cbr3, Dopey2, Morc3, Chaf1b, Cldn14
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224F12.bB6Ng01-224F12.g
ACCGA038828GA038829
length1,072890
definitionB6Ng01-224F12.b B6Ng01-224F12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,817,266 - 92,818,338)(93,006,428 - 93,007,317)
sequence
gaattctcagtgcccttgtccaggatttgggctcagtttccagtacccac
atagtaggtataactgtctgtaactctagctcaagctccagggactgcac
acacactcagacacttaaatatgcacaataaatcaatcgattagtcaaac
agtcaataaacagaagaagagggcaggaagttggaaggaggtatgatgtt
ccagggcagatatgggtggaaccggaaggggaaacagggagtggatttga
gtatatttcatggtagaggtgtatgaaattctcaacaaataaattgaaat
atataccaaaaatataaatgaagcttccctttctgaacaacaagaccagt
ccatatgacgcagaggcctgccaacactttactgcctacacagggcctca
ggtgctcagccatcttggacctggcacagcctggtgggacacaaaacagg
gatgtcttatgtcccttgtgcaccagtctgggctgctggctccatataca
gaccagccttgtgtgcacgagctgctgtggtcagcttctcctctatgtgc
agccagcacgtgttcactgaggaatccaagcaaaagtgtggttctcctct
tgtaataaaacatatcactgccggcacccttgggcacggtgttcatctcc
gtgctgtgcccccttggcaccggtcagtgttatcagggctgcagagagga
agatggagaaaagtgagggcagaggagatgacatcgggaagctgagatag
cccaagaggacacagcagcactgcctgagcttgtctgatgtggatagtga
taggtggttcagacccaaccccatttaatgtgagatatccttgggttcca
tcataacacttctgatggtggccattgtcttcaaagacctcaaagaaaac
aacacattccccttcccttccctccctttccctcccctccctgcttttct
ttcctttttctcccttttcttctttcctgagaacaggtctctgtatccca
ggaatagcctcagactccatgtacctaagtattctttgaactctggttta
caaatattaaggaaaagggatg

gaattcaaagccatcgaggggtaaagatagctagctgtctgtctttcttg
actgggtttgtgcttttctctttctccctaaccctgcctctgactccatt
ttttgaaaattagccagacaacggccgcatttccagttactggatgagtt
cagagccaagcagctgttcagaaacatccaagtgggcagcaaatggcgct
gatggagttaaaggcggtgactcacacgggacattctcagcaggtcagct
ggaactccctgctgggcagggaatgcagccccctggggcaggtgccaagc
ccaggagcagagcccgggatgacagcagcaactcaccacacagtggcctc
cgctcggtcgcttccctgttctcagttttcatgattttttttttataagg
tgaatttttttctaacgcaatcctgaagtgtgatgggaaaaacaggccgg
gcagctgttgactgtttgaaacaacagaggggaggctgggtcccttggac
cggctccacacacgctgcctcgccagctttcctgatcattttctcataga
aaattatgggtcaagagctcgatcctgcgcgctcctcatgccagtcagtc
gctcgctcagcgaaggtgaggcttgcaggagcccagaggggcttgctcat
ctagaaatatatttctacaaaagattataattttacaaggtgactcaatc
aaacaacaataaagaccacgggtaggctaggggaagaggggaaagcacac
ttgagtttgtgagcttatataacagcactaccatgaagggcactaaagaa
tataaaaatggcatcctagatgtttattattaaacataattgtcaggagg
gaggggacttaattacttcaacaaattcaattgtggactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_92817266_92818338
seq2: B6Ng01-224F12.b_48_1119

seq1  GAATTCTCAGTGCCCTTGTCCAGGATTTGGGCTCAGTTTCCAGTACCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGTGCCCTTGTCCAGGATTTGGGCTCAGTTTCCAGTACCCAC  50

seq1  ATAGTAGGTATAACTGTCTGTAACTCTAGCTCAAGCTCCAGGGACTGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAGGTATAACTGTCTGTAACTCTAGCTCAAGCTCCAGGGACTGCAC  100

seq1  ACACACTCAGACACTTAAATATGCACAATAAATCAATCGATTAGTCAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTCAGACACTTAAATATGCACAATAAATCAATCGATTAGTCAAAC  150

seq1  AGTCAATAAACAGAAGAAGAGGGCAGGAAGTTGGAAGGAGGTATGATGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAATAAACAGAAGAAGAGGGCAGGAAGTTGGAAGGAGGTATGATGTT  200

seq1  CCAGGGCAGATATGGGTGGAACCGGAAGGGGAAACAGGGAGTGGATTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCAGATATGGGTGGAACCGGAAGGGGAAACAGGGAGTGGATTTGA  250

seq1  GTATATTTCATGGTAGAGGTGTATGAAATTCTCAACAAATAAATTGAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATTTCATGGTAGAGGTGTATGAAATTCTCAACAAATAAATTGAAAT  300

seq1  ATATACCAAAAATATAAATGAAGCTTCCCTTTCTGAACAACAAGACCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACCAAAAATATAAATGAAGCTTCCCTTTCTGAACAACAAGACCAGT  350

seq1  CCATATGACGCAGAGGCCTGCCAACACTTTACTGCCTACACAGGGCCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATGACGCAGAGGCCTGCCAACACTTTACTGCCTACACAGGGCCTCA  400

seq1  GGTGCTCAGCCATCTTGGACCTGGCACAGCCTGGTGGGACACAAAACAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTCAGCCATCTTGGACCTGGCACAGCCTGGTGGGACACAAAACAGG  450

seq1  GATGTCTTATGTCCCTTGTGCACCAGTCTGGGCTGCTGGCTCCATATACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTTATGTCCCTTGTGCACCAGTCTGGGCTGCTGGCTCCATATACA  500

seq1  GACCAGCCTTGTGTGCACGAGCTGCTGTGGTCAGCTTCTCCTCTATGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGCCTTGTGTGCACGAGCTGCTGTGGTCAGCTTCTCCTCTATGTGC  550

seq1  AGCCAGCACGTGTTCACTGAGGAATCCAAGCAAAAGTGTGGTTCTCCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCACGTGTTCACTGAGGAATCCAAGCAAAAGTGTGGTTCTCCTCT  600

seq1  TGTAATAAAACATATCACTGCCGGCACCCTTGGGCACGGTGTTCATCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATAAAACATATCACTGCCGGCACCCTTGGGCACGGTGTTCATCTCC  650

seq1  GTGCTGTGCCCCCTTGGCACCGGTCAGTGTTATCAGGGCTGCAGAGAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTGCCCCCTTGGCACCGGTCAGTGTTATCAGGGCTGCAGAGAGGA  700

seq1  AGATGGAGAAAAGTGAGGGCAGAGGAGATGACATCGGGAAGCTGAGATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGAGAAAAGTGAGGGCAGAGGAGATGACATCGGGAAGCTGAGATAG  750

seq1  CCCAAGAGGACACAGCAGCACTGCCTGAGCTTGTCTGATGTGGATAGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGAGGACACAGCAGCACTGCCTGAGCTTGTCTGATGTGGATAGTGA  800

seq1  TAGGTGGTTCAGACCCAACCCCATTTAATGTGAGATATCCTTGGGTTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGGTTCAGACCCAACCCCATTTAATGTGAGATATCCTTGGGTTCCA  850

seq1  TCATAACACTTCCTGATGGTGGCCATTGTCTCCAAAGACCTCAAAGAAAA  900
      ||||||||||| ||||||||||||||||||| ||||||||||||||||||
seq2  TCATAACACTT-CTGATGGTGGCCATTGTCTTCAAAGACCTCAAAGAAAA  899

seq1  C-ACACATTCCCCTTTCCCTTCCCTCCCTTTCCCTCCCCTCCCCTGCTTT  949
      | ||||||||||| |||||||||||||||||||||||||| |||||||||
seq2  CAACACATTCCCC-TTCCCTTCCCTCCCTTTCCCTCCCCT-CCCTGCTTT  947

seq1  TCTTTCCTTTTCTTCCCTTTTCTTCTTTCCTGAGACAGGGTCTCTGTATC  999
      |||||||||||  ||||||||||||||||||||||   ||||||||||||
seq2  TCTTTCCTTTTTCTCCCTTTTCTTCTTTCCTGAGAACAGGTCTCTGTATC  997

seq1  CCAGG-ATAGCCTCAGACTCCATGTACCTAAGTATATCTTGAACTCGTGT  1048
      ||||| |||||||||||||||||||||||||||||   ||||||||  ||
seq2  CCAGGAATAGCCTCAGACTCCATGTACCTAAGTATTCTTTGAACTCTGGT  1047

seq1  TTACAAATATTAGGAAAACAGGATG  1073
      |||||||||||| | |||  |||||
seq2  TTACAAATATTAAGGAAAAGGGATG  1072


seq1: chr16_93006428_93007317
seq2: B6Ng01-224F12.g_68_957 (reverse)

seq1  GAGT-CACAATTGAATTTGTTGAAGTAATTAAGT-CCCTCCCTCCCTGAA  48
      |||| ||||||||||||||||||||||||||||| |||||||| |||| |
seq2  GAGTCCACAATTGAATTTGTTGAAGTAATTAAGTCCCCTCCCT-CCTG-A  48

seq1  CAATTATGTTTAATAATAAACATCTAGGATGCCATTTTTATATTCTTTAG  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATGTTTAATAATAAACATCTAGGATGCCATTTTTATATTCTTTAG  98

seq1  TGCCCTTCATGGTAGTGCTGTTATATAAGCTCACAAACTCAAGTGTGCTT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTCATGGTAGTGCTGTTATATAAGCTCACAAACTCAAGTGTGCTT  148

seq1  TCCCCTCTTCCCCTAGCCTACCCGTGGTCTTTATTGTTGTTTGATTGAGT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCTTCCCCTAGCCTACCCGTGGTCTTTATTGTTGTTTGATTGAGT  198

seq1  CACCTTGTAAAATTATAATCTTTTGTAGAAATATATTTCTAGATGAGCAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTGTAAAATTATAATCTTTTGTAGAAATATATTTCTAGATGAGCAA  248

seq1  GCCCCTCTGGGCTCCTGCAAGCCTCACCTTCGCTGAGCGAGCGACTGACT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTCTGGGCTCCTGCAAGCCTCACCTTCGCTGAGCGAGCGACTGACT  298

seq1  GGCATGAGGAGCGCGCAGGATCGAGCTCTTGACCCATAATTTTCTATGAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGAGGAGCGCGCAGGATCGAGCTCTTGACCCATAATTTTCTATGAG  348

seq1  AAAATGATCAGGAAAGCTGGCGAGGCAGCGTGTGTGGAGCCGGTCCAAGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGATCAGGAAAGCTGGCGAGGCAGCGTGTGTGGAGCCGGTCCAAGG  398

seq1  GACCCAGCCTCCCCTCTGTTGTTTCAAACAGTCAACAGCTGCCCGGCCTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGCCTCCCCTCTGTTGTTTCAAACAGTCAACAGCTGCCCGGCCTG  448

seq1  TTTTTCCCATCACACTTCAGGATTGCGTTAGAAAAAAATTCACCTTATAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCCATCACACTTCAGGATTGCGTTAGAAAAAAATTCACCTTATAA  498

seq1  AAAAAAAATCATGAAAACTGAGAACAGGGAAGCGACCGAGCGGAGGCCAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATCATGAAAACTGAGAACAGGGAAGCGACCGAGCGGAGGCCAC  548

seq1  TGTGTGGTGAGTTGCTGCTGTCATCCCGGGCTCTGCTCCTGGGCTTGGCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGTGAGTTGCTGCTGTCATCCCGGGCTCTGCTCCTGGGCTTGGCA  598

seq1  CCTGCCCCAGGGGGCTGCATTCCCTGCCCAGCAGGGAGTTCCAGCTGACC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCCAGGGGGCTGCATTCCCTGCCCAGCAGGGAGTTCCAGCTGACC  648

seq1  TGCTGAGAATGTCCCGTGTGAGTCACCGCCTTTAACTCCATCAGCGCCAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGAATGTCCCGTGTGAGTCACCGCCTTTAACTCCATCAGCGCCAT  698

seq1  TTGCTGCCCACTTGGATGTTTCTGAACAGCTGCTTGGCTCTGAACTCATC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGCCCACTTGGATGTTTCTGAACAGCTGCTTGGCTCTGAACTCATC  748

seq1  CAGTAACTGGAAATGCGGCCGTTGTCTGGCTAATTTTCAAAAAATGGAGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAACTGGAAATGCGGCCGTTGTCTGGCTAATTTTCAAAAAATGGAGT  798

seq1  CAGAGGCAGGGTTAGGGAGAAAGAGAAAAGCACAAACCCAGTCAAGAAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAGGGTTAGGGAGAAAGAGAAAAGCACAAACCCAGTCAAGAAAG  848

seq1  ACAGACAGCTAGCTATCTTTACCCCTCGATGGCTTTGAATTC  890
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGCTAGCTATCTTTACCCCTCGATGGCTTTGAATTC  890


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