BAC Information

Click to search

BAC

Clone NameB6Ng01-224J11
Chromosome16 (Build37)
Map Location 85,988,480 - 86,102,527
singlet/doubletdoublet
Overlap geneLOC100040025
Upstream geneApp, Cyyr1, LOC100039994, LOC622000, Adamts1, Adamts5
Downstream geneLOC100039780
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224J11.bB6Ng01-224J11.g
ACCGA039006GA039007
length1,1841,080
definitionB6Ng01-224J11.b B6Ng01-224J11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,101,346 - 86,102,527)(85,988,480 - 85,989,563)
sequence
gaattctttctttccagtttgtatccctttgatctccttttgttgtctac
ttgctctggctaggacttcaagtactatattgaataggtaggaagagagt
gggcagccttgtctagtccctgattttagtgggattgaatcaagtttctc
tccattaagtttgatgttggctactggtttgctgtatattgcttttatta
tgtttaataatagggccttgaattcctgatctttccaaaactttatcgtg
aatgggtgttggaatttatcaaacgctttttcagcatcttatgagatgat
catatggtttttgtctttgagtttgtttatatagtggattacgttgatgg
atgtccacattttaaaccatgtctgcatccctgggatgaatcctacttga
tcatgatggataatcattttgatgtgttcttggaattggtttgtgagaat
tttattgagttaacttgagcacagcaagtgagtggtctctttatcccctt
cctttatgactaatactgacagaccctttagcaattagacattttcctgt
aaagtcaaaactagaattagaattcccacaggtctgtgtaatgatcacat
atgtacactgaatgaatatatgtgagatttcatgtttaatatgaaaaata
atatcaaaatgaaagaacatataaaacatggatctggagacataaaagag
agcctacatgaccaggagtgttagacttgtttccatactcctttgcaatg
tgtcaagagaaaatcatgggactacctagttttacctgtgactaaagact
caaattttctttgaagaaaagagtttcatcaaaaagaaagtgtaaagtgg
aaaaagtctgttgcccacagcactgctgtgggctctcgggaatcagagca
aacctggcacagcagttgcttcacttaacacattaaatcaaagcaccaac
tgaagctatcaaaaataccaataaatacatcaaaaccatgcttagtagct
ggaaaaaaatctgaacctcagaaatcaaatgttggatgattgtgtaattt
gaatatttattacatgcctgtgaagaaaggcatttagatgaaatgatgtt
tagaatgaaatgtagttaagaaaagccaagggatggctagctgtgttttt
gtgttaagttttaaccgaagctacaacctcaaat

gaattcttataaagctcataagggaaaggacttagaaaagggaaggaggc
aagatattaatagtttatgttggttgtcatttgctgagtttagcaaatta
ttgcaaggaaacagatgcgctcagccaataattggtgtgattgagaacac
actcaaggagaataaatctgcaggaatgtggggcctctggggtcagagac
acttccattccaaaatggggagagataaggcctaaaaagcttttagtctc
cagggcccattaacaatcagtcctgtatcagagagtacactgagtgtgga
tcttcctgtacatctggttgtagtagcaaagatgtcacacagaaacttga
aagggagagagagcttttgtgctaagacctcaagaaatcaactgggcttg
gcagtaatatctagaaacactttggaatgtaattactgaaacatgggttt
aaagaatcttcataaggctgccagcttagcaagcaaaaatagaaggtttc
cagttaaaccaaagtttagataagaaacaaatagtggctcagtaggagtg
ggtctctggaatacatgctagttattttgaaaggtcatatttttgtttat
agagattcaattgaacttggtatcttgcatgctttctagcttggctaagt
cagggaaatgttgaaggagaataacttctgaataagcagtgtccaaactg
taaataaaataatcattaagtgattttagaataacaattgggcccctaaa
attgctaaagaaactgggtttggaagtctgaggacaatagtggaatgttg
taagcaacagttaggaaacagttctctagaggaaagatggaaacgctacc
aagaatattcctctcagtattggaatgatggtttccccacctatggtcct
ctattgtttgtaacacctagagatttccattgctgtttattttacttgtt
gagtggccctctttttctacaatgtagatgctgacatttaacactttctc
tttgtcaatgctatatactgactgagaggatggggtttagtgggtgtgac
tattccttagatcttgctgatcatggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_86101346_86102527
seq2: B6Ng01-224J11.b_48_1231 (reverse)

seq1  ATTTGA-GTTGTAGTTTTGTGTAAAACTT-ACACAAAAACACAGCTAGCC  48
      |||||| ||||||| || |  |||||||| ||||||||||||||||||||
seq2  ATTTGAGGTTGTAGCTTCGGTTAAAACTTAACACAAAAACACAGCTAGCC  50

seq1  ATCCCTT-GCTTTTCTTAACCTTCATTTCATCTTAACCTTCATTTCATCT  97
      ||||||| ||||||||||| || ||||||||  ||| | |||||||||||
seq2  ATCCCTTGGCTTTTCTTAA-CTACATTTCATTCTAAACATCATTTCATCT  99

seq1  TAATTGCTTTTCCTTCACAGGGCATGTAATAAATATCAAAATTACACAAT  147
       |||  ||||  ||||||| ||||||||||||||||  ||||||||||||
seq2  AAATGCCTTT--CTTCACA-GGCATGTAATAAATATTCAAATTACACAAT  146

seq1  CATCCAACAATTTGATTTCTGA-GTTCAGATTTTTTT-CAGCTACTAAGC  195
      |||||||| ||||||||||||| |||||||||||||| ||||||||||||
seq2  CATCCAAC-ATTTGATTTCTGAGGTTCAGATTTTTTTCCAGCTACTAAGC  195

seq1  ATGGTTTTGATGTATTTATTGGTA-TTTTGATAGCTTCAGTTGGTGCTTT  244
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATGGTTTTGATGTATTTATTGGTATTTTTGATAGCTTCAGTTGGTGCTTT  245

seq1  GATTTAATGTGTTAAGTGAAGCAACTGCTGTGCCAGGTTTGCTCTGATTC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAATGTGTTAAGTGAAGCAACTGCTGTGCCAGGTTTGCTCTGATTC  295

seq1  CCGAGAGCCCACAGCAGTGCTGTGGGCAACAGACTTTTTCCACTTTACAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGAGCCCACAGCAGTGCTGTGGGCAACAGACTTTTTCCACTTTACAC  345

seq1  TTTCTTTTTGATGAAACTCTTTTCTTCAAAG-AAATTTGAGTCTTTAGTC  393
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTTCTTTTTGATGAAACTCTTTTCTTCAAAGAAAATTTGAGTCTTTAGTC  395

seq1  ACAGGTAAAACTAGGTAGTCCCATGATTTTCTCTTGACACATTGCAAAGG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTAAAACTAGGTAGTCCCATGATTTTCTCTTGACACATTGCAAAGG  445

seq1  AGTATGGAAACAAGTCTAACACTCCTGGTCATGTAGGCTCTCTTTTATGT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGGAAACAAGTCTAACACTCCTGGTCATGTAGGCTCTCTTTTATGT  495

seq1  CTCCAGATCCATGTTTTATATGTTCTTTCATTTTGATATTATTTTTCATA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGATCCATGTTTTATATGTTCTTTCATTTTGATATTATTTTTCATA  545

seq1  TTAAACATGAAATCTCACATATATTCATTCAGTGTACATATGTGATCATT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACATGAAATCTCACATATATTCATTCAGTGTACATATGTGATCATT  595

seq1  ACACAGACCTGTGGGAATTCTAATTCTAGTTTTGACTTTACAGGAAAATG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGACCTGTGGGAATTCTAATTCTAGTTTTGACTTTACAGGAAAATG  645

seq1  TCTAATTGCTAAAGGGTCTGTCAGTATTAGTCATAAAGGAAGGGGATAAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTGCTAAAGGGTCTGTCAGTATTAGTCATAAAGGAAGGGGATAAA  695

seq1  GAGACCACTCACTTGCTGTGCTCAAGTTAACTCAATAAAATTCTCACAAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCACTCACTTGCTGTGCTCAAGTTAACTCAATAAAATTCTCACAAA  745

seq1  CCAATTCCAAGAACACATCAAAATGATTATCCATCATGATCAAGTAGGAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTCCAAGAACACATCAAAATGATTATCCATCATGATCAAGTAGGAT  795

seq1  TCATCCCAGGGATGCAGACATGGTTTAAAATGTGGACATCCATCAACGTA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCAGGGATGCAGACATGGTTTAAAATGTGGACATCCATCAACGTA  845

seq1  ATCCACTATATAAACAAACTCAAAGACAAAAACCATATGATCATCTCATA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTATATAAACAAACTCAAAGACAAAAACCATATGATCATCTCATA  895

seq1  AGATGCTGAAAAAGCGTTTGATAAATTCCAACACCCATTCACGATAAAGT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGAAAAAGCGTTTGATAAATTCCAACACCCATTCACGATAAAGT  945

seq1  TTTGGAAAGATCAGGAATTCAAGGCCCTATTATTAAACATAATAAAAGCA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAAGATCAGGAATTCAAGGCCCTATTATTAAACATAATAAAAGCA  995

seq1  ATATACAGCAAACCAGTAGCCAACATCAAACTTAATGGAGAGAAACTTGA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACAGCAAACCAGTAGCCAACATCAAACTTAATGGAGAGAAACTTGA  1045

seq1  TTCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTCTCTTCCT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTCTCTTCCT  1095

seq1  ACCTATTCAATATAGTACTTGAAGTCCTAGCCAGAGCAAGTAGACAACAA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATTCAATATAGTACTTGAAGTCCTAGCCAGAGCAAGTAGACAACAA  1145

seq1  AAGGAGATCAAAGGGATACAAACTGGAAAGAAAGAATTC  1182
      |||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGATCAAAGGGATACAAACTGGAAAGAAAGAATTC  1184


seq1: chr16_85988480_85989563
seq2: B6Ng01-224J11.g_68_1147

seq1  GAATTCTTATAAAGCTCATAAGGGAAAGGACTTAGAAAAGGGAAGGAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATAAAGCTCATAAGGGAAAGGACTTAGAAAAGGGAAGGAGGC  50

seq1  AAGATATTAATAGTTTATGTTGGTTGTCATTTGCTGAGTTTAGCAAATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATTAATAGTTTATGTTGGTTGTCATTTGCTGAGTTTAGCAAATTA  100

seq1  TTGCAAGGAAACAGATGCGCTCAGCCAATAATTGGTGTGATTGAGAACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGGAAACAGATGCGCTCAGCCAATAATTGGTGTGATTGAGAACAC  150

seq1  ACTCAAGGAGAATAAATCTGCAGGAATGTGGGGCCTCTGGGGTCAGAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGGAGAATAAATCTGCAGGAATGTGGGGCCTCTGGGGTCAGAGAC  200

seq1  ACTTCCATTCCAAAATGGGGAGAGATAAGGCCTAAAAAGCTTTTAGTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCATTCCAAAATGGGGAGAGATAAGGCCTAAAAAGCTTTTAGTCTC  250

seq1  CAGGGCCCATTAACAATCAGTCCTGTATCAGAGAGTACACTGAGTGTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCCATTAACAATCAGTCCTGTATCAGAGAGTACACTGAGTGTGGA  300

seq1  TCTTCCTGTACATCTGGTTGTAGTAGCAAAGATGTCACACAGAAACTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTGTACATCTGGTTGTAGTAGCAAAGATGTCACACAGAAACTTGA  350

seq1  AAGGGAGAGAGAGCTTTTGTGCTAAGACCTCAAGAAATCAACTGGGCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGAGAGAGCTTTTGTGCTAAGACCTCAAGAAATCAACTGGGCTTG  400

seq1  GCAGTAATATCTAGAAACACTTTGGAATGTAATTACTGAAACATGGGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAATATCTAGAAACACTTTGGAATGTAATTACTGAAACATGGGTTT  450

seq1  AAAGAATCTTCATAAGGCTGCCAGCTTAGCAAGCAAAAATAGAAGGTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATCTTCATAAGGCTGCCAGCTTAGCAAGCAAAAATAGAAGGTTTC  500

seq1  CAGTTAAACCAAAGTTTAGATAAGAAACAAATAGTGGCTCAGTAGGAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAAACCAAAGTTTAGATAAGAAACAAATAGTGGCTCAGTAGGAGTG  550

seq1  GGTCTCTGGAATACATGCTAGTTATTTTGAAAGGTCATATTTTTGTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTGGAATACATGCTAGTTATTTTGAAAGGTCATATTTTTGTTTAT  600

seq1  AGAGATTCAATTGAACTTGGTATCTTGCATGCTTTCTAGCTTGGCTAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTCAATTGAACTTGGTATCTTGCATGCTTTCTAGCTTGGCTAAGT  650

seq1  CAGGGAAATGTTGAAGGAGAATAACTTCTGAATAAGCAGTGTCCAAACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAATGTTGAAGGAGAATAACTTCTGAATAAGCAGTGTCCAAACTG  700

seq1  TAAATAAAATAATCATTAAGTGATTTTAGAATAACAATTGGGCCCCTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAAATAATCATTAAGTGATTTTAGAATAACAATTGGGCCCCTAAA  750

seq1  ATTGCTAAAGAAACTGGGTTTGGAAGTCTGAGGACAATAGTGGAATGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTAAAGAAACTGGGTTTGGAAGTCTGAGGACAATAGTGGAATGTTG  800

seq1  TAAGCAACAGTTAGGAAACAGTTCTCTAGAGGAAAGATGGAAACGCTACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAACAGTTAGGAAACAGTTCTCTAGAGGAAAGATGGAAACGCTACC  850

seq1  AAGAATATTCCTCTCAGTATTGGAATGATGGTTTCCCCACCTATGGTCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATATTCCTCTCAGTATTGGAATGATGGTTTCCCCACCTATGGTCCT  900

seq1  CTATTGTTTGTAACACCTAGAGATTTCCATTGCTGTTTATTTTAC-TGTT  949
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTATTGTTTGTAACACCTAGAGATTTCCATTGCTGTTTATTTTACTTGTT  950

seq1  GAGTGG-CCTCTTTTTCTACATTGTAGATGCTGACATTTTAACAC-TTCT  997
      |||||| |||||||||||||| |||||||||||||| |||||||| ||||
seq2  GAGTGGCCCTCTTTTTCTACAATGTAGATGCTGACA-TTTAACACTTTCT  999

seq1  CTTGTCCATTGCTATTATACTGACTGAAGAGGAATGGGTTTAAGTTGGGT  1047
      |||   || ||||| ||||||||||| ||||| ||||| || |||  || 
seq2  CTTTGTCAATGCTA-TATACTGACTG-AGAGG-ATGGGGTTTAGT--GGG  1044

seq1  TGTGACTTATTCTTTAGTATC-TGCTGGATCAT-GAGGA  1084
      |||||| ||||| |||| ||| |||| |||||| |||||
seq2  TGTGAC-TATTCCTTAG-ATCTTGCT-GATCATGGAGGA  1080


| Home | SequenceCutter | Blast | Download |