BAC Information

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BAC

Clone NameB6Ng01-225H04
Chromosome16 (Build37)
Map Location 31,994,300 - 31,994,852
singlet/doubletsinglet
Overlap geneSenp5
Upstream geneAI480653, Centb2, Ppp1r2, Apod, 1700007E05Rik, Bdh1, Gm536, Dlg1, Mfi2, LOC677155, Pigz, 0610012G03Rik, Ncbp2
Downstream genePak2, Pigx, 1500031L02Rik, Lrrc33, Bex6, Fbxo45, Wdr53, 2310010M20Rik, Rnf168, LOC666966, Ubxd7, Tm4sf19, 0610012D17Rik, Pcyt1a, Osta, Zdhhc19, LOC385820, Tfrc, Tnk2, ENSMUSG00000075265, LOC672302, Muc4, Muc20, 1700021K19Rik, Fyttd1, Lrch3, EG625660
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225H04.bB6Ng01-225H04.g
ACCGA039639GA039640
length546492
definitionB6Ng01-225H04.b B6Ng01-225H04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ctgcagaaaacttgtcccctcaccttataaggatacactgctaataagga
atcattccttcaggatgagagaaggcatgtaaggagaaaagattatagat
atttaaccctcccctaaaaggttcaacaattactcctcagggtgttctga
agttagagaaatgtcttaggctctggatcctaatcacacagcctccattc
cccccagggataaaatacatggactgtgagaacagtctgaaggagaaagc
tatactcaatgagacacacttttggtctgttttattttttccagacaggg
tttctctatgtagccctggctgccctcaaacacagagatctgccttcctc
tgtctcccaagtgctgggattaaaggtgtgtgccaccacccatccccagc
aaaacatacttctgtttttcttttctttttttttttttttaaagatttat
ttagtattatatgtaagtacactgtagctgtcttctacacaccataagag
ggagtcagatcttgttactgatggctgtgagccaccatgtggttgc
acagtctcaggagagagtatcaaatcctgtggaactgtatttacatgcag
tcatgaggccccatgtgggtgctgggaactgaacccaagtcctctgcaag
agcagcacaccctcttaaccagtgaggcacctctctgaccctgtctattt
gtgctggggtatgtgtttgtttgtttaagatttatttgtattgctcttta
ttcatttgtgtgtctgtgtgtgagcctacattgtacatgcaggagccttt
ggagactggaagcattgaatcctctggaactggcaatgttgttgtgagcc
accagaggtaggtgctccttgacgtctatttttatataataataataata
acaacaataacaaatgagttgagtggtggtagcgcacactttcaatccca
gcacttgggaggcaaaaggaggggaatatctatgagtttgaggccagact
ggtctacagagtgagttccttgacagttagggctattacaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_31994300_31994852
seq2: B6Ng01-225H04.b_46_597

seq1  GAATTCCTGCAGAAAACTTGTCCCCTCACCTTATAAGGATACACTGCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCAGAAAACTTGTCCCCTCACCTTATAAGGATACACTGCTAA  50

seq1  TAAGGAATCATTCCTTCAGGATGAGAGAAGGCATGTAAGGAGAAAAGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAATCATTCCTTCAGGATGAGAGAAGGCATGTAAGGAGAAAAGATT  100

seq1  ATAGATATTTAACCCTCCCCTAAAAGGTTCAACAATTACTCCTCAGGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATATTTAACCCTCCCCTAAAAGGTTCAACAATTACTCCTCAGGGTG  150

seq1  TTCTGAAGTTAGAGAAATGTCTTAGGCTCTGGATCCTAATCACACAGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGTTAGAGAAATGTCTTAGGCTCTGGATCCTAATCACACAGCCT  200

seq1  CCATTCCCCCCAGGGATAAAATACATGGACTGTGAGAACAGTCTGAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCCCCCCAGGGATAAAATACATGGACTGTGAGAACAGTCTGAAGGA  250

seq1  GAAAGCTATACTCAATGAGACACACTTTTGGTCTGTTTTATTTTTTCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTATACTCAATGAGACACACTTTTGGTCTGTTTTATTTTTTCCAG  300

seq1  ACAGGGTTTCTCTATGTAGCCCTGGCTGCCCTCAAACACAGAGATCTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTTTCTCTATGTAGCCCTGGCTGCCCTCAAACACAGAGATCTGCC  350

seq1  TTCCTCTGTCTCCCAAGTGCTGGGATTAAAGGTGTGTGCCACCACCCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTGTCTCCCAAGTGCTGGGATTAAAGGTGTGTGCCACCACCCATC  400

seq1  CCCAGCAAAACATACTTCTGTTTTTCTTTTCTTTTTTTTTTTTTTTAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCAAAACATACTTCTGTTTTTCTTTTCTTTTTTTTTTTTTTTAAAG  450

seq1  ATTTATTTAGTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACACC  500
      |||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  ATTTATTTAGTATTATATGTAAGTACACTGTAGCTGTCTTC-TACACACC  499

seq1  AGAAGAGGGAGTCAGATCTTGTTACGGATGGCTGTGAGCCACCATGTGGT  550
      | ||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATAAGAGGGAGTCAGATCTTGTTACTGATGGCTGTGAGCCACCATGTGGT  549

seq1  TGC  553
      |||
seq2  TGC  552