BAC Information

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BAC

Clone NameB6Ng01-225H10
Chromosome16 (Build37)
Map Location 24,804,871 - 24,951,785
singlet/doubletdoublet
Overlap geneLpp
Upstream geneLOC100043023, Sst, Rtp2, Bcl6, EG433009, LOC666580, LOC100043564, 1110054M08Rik, A730098P11Rik
Downstream gene5430420C16Rik, Trp63
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225H10.bB6Ng01-225H10.g
ACCGA039651GA039652
length1,2021,179
definitionB6Ng01-225H10.b B6Ng01-225H10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,950,589 - 24,951,785)(24,804,871 - 24,806,043)
sequence
gaattcaaagggggctcagtgcagttgccatgccttttgctactggtagg
cacagttaggctatctttcccagagaattttaagctaaaggaaaatgtcc
cttgacaattttcaccagctaaaagacaaaagtgtttttgctactgaaaa
ctgtcactccgtattctgacttcaacttccagcatctgagaagagattag
atttctaattttcgaatgggggatgagaacccgcagtatggaaggacctg
cttctgtgtcaggctgtcattttctggaaccaatgttgtttctagagtat
tttggaagaggaggcaggaataggtcagaacttgctaaaacaagctcttt
ggtactaataattgtgctagatgactaagatctctgtaagacaatataaa
agtgtttcacaaacttcgtttgctaaaaaaaaaaaaaaaaaaaaaaatac
tggccatcatttgaaagctacctgaccaaacaagacttggctcaggctat
tagagatagtacttttaataaaagcagcctgcacatgaggatttgcatag
aacaatctgtgtagctaagctgttccatcaccctctccaccagacaggga
gcgagcattcagctctcccaaactgccaaagctaaaaggatgtactgcta
cgatccctaactgccaaagctaaaaggatatactgctactatccctttgg
tttgttacaccctgcttccttttcttgattcttaggcaatgatctctttg
tttttccttattcagctttgcttggcttcttttctcccaaagccgtgtgt
ctgcaatgtggagtttgcataggatttcaattataggatttagatagtga
ccaagcagggccatgaaatctacaaacagaccaatcatggactcaatgct
atttgtgtgaagataataaaaattattactctgtaattacagacaaatta
aatttcttgttcatttgggttctgctgaataatatcaaagcacattgcag
aaatacccaaaaggcagtttaggtggggtgcaatcactagtgatgccttt
tttctaggactaagtacttatgggagtcaaatcagaagattcacctataa
cactcaatcgtgcatgttaggccccttatgtgtgtagagtgtatggattt
caccttgcaggtcaatgcagctaatgttgcctatgcagccctgctgggtt
gc

gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatccataactctagtttcagtggaat
gcagccccctcttctgaccgctggagacagtgggttctcaagcagtgtgc
ttccatgcattcaaccaaaacacttgctcatacacataagtagaaaatga
ataaatctttctaaaatagtaaaagaatagtgttatggtcattcctaaat
agtaaaatatacgttttcaagacttaactacaatttttgacatgtagatg
tatacactaacatgtgagaatttgtggtcgagccagagaaaacagagatg
caaaagcaaaagagaaggccattggctcagtcctctgtctgcaagaatgg
aaacattgaataagtttcttccttcacacagacatttgccgattatctga
gaagcccctaaaatcgatgtgtgtcttggatctaagagtattgagcaggt
gataggctcttaaccagtgccccctgaatgacactcactagtcttagtca
tcctgccctgactggacaccaggaggcttcttgtctttactttaatgggc
cagacatacttctgaacttccagcgctttttttttttatgtcaggcactt
ggagccttgccctgctagggagaccagatgaacgacggaggtctgattaa
ttagtatttgcttcatatgtgtttgtttttattcctctctaaagttgtac
tggaaaaagaaaatcctgcctaatgcaataacaaaataagtggaaaaata
cttgaaaattgtacttactatttaaatgtaaaggtcaatattattgtagc
tgttagtaacgaacaaccatcatattaaaacctaagcgtaattccaataa
aagaagcttgttgattccctctgcccgttttttgtcaatctcttagccca
cccaataatcggtcacaaaaaaatttaagctattaggcgtttgagtcagc
atatgcctatatacacgaatttatcttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_24950589_24951785
seq2: B6Ng01-225H10.b_46_1247 (reverse)

seq1  GCAACCCAGCAGGGGCTGCATAGGCAACCCCTAGCTGCACTGTGCCCCTG  50
      ||||||||||| ||||||||||||||| |  |||||||| ||    ||||
seq2  GCAACCCAGCA-GGGCTGCATAGGCAA-CATTAGCTGCATTG---ACCTG  45

seq1  CAGGGTG-AATCATTACACTCTACACACAT-AGGGGC--TACATGCACGA  96
      || |||| ||||  |||||||||||||||| ||||||   ||||||||||
seq2  CAAGGTGAAATCCATACACTCTACACACATAAGGGGCCTAACATGCACGA  95

seq1  ATGAGTG-TATAGGTGAATCTTCTGGTTTGACT-CCATAAGTACCTTAGT  144
       |||||| ||||||||||||||||| ||||||| ||||||||| ||||||
seq2  TTGAGTGTTATAGGTGAATCTTCTGATTTGACTCCCATAAGTA-CTTAGT  144

seq1  CCTAG--AAAAGGCATCACCTAGTGATTGGCACCCA-CTTAACTGCCTTT  191
      |||||  ||||||||||| ||||||||||   |||| || ||||||||||
seq2  CCTAGAAAAAAGGCATCA-CTAGTGATTGCACCCCACCTAAACTGCCTTT  193

seq1  T-GGTA-TTCTGCAAATGTTGCTTTGATA-TATTCAGCAGAACCCAAATG  238
      | |||| |||||| |||| |||||||||| ||||||||||||||||||||
seq2  TGGGTATTTCTGC-AATG-TGCTTTGATATTATTCAGCAGAACCCAAATG  241

seq1  AAC-AGAAA-TTAATTTGTCTGTAATTACAGAGTAATAATTTTTATTATC  286
      ||| ||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGAAATTTAATTTGTCTGTAATTACAGAGTAATAATTTTTATTATC  291

seq1  TTCACACAAATAGCATTGAGTCCATGATTGGTCTGTTTGTAGATTTCATG  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACAAATAGCATTGAGTCCATGATTGGTCTGTTTGTAGATTTCATG  341

seq1  GCCCTGCTTGGTCACTATCTAAATCCTATAATTGAAATCCTATGCAAACT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGCTTGGTCACTATCTAAATCCTATAATTGAAATCCTATGCAAACT  391

seq1  CCACATTGCAGACACACGGCTTTGGGAGAAAAGAAGCCAAGCAAAGCTGA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTGCAGACACACGGCTTTGGGAGAAAAGAAGCCAAGCAAAGCTGA  441

seq1  ATAAGGAAAAACAAAGAGATCATTGCCTAAGAATCAAGAAAAGGAAGCAG  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGAAAAACAAAGAGATCATTGCCTAAGAATCAAGAAAAGGAAGCAG  491

seq1  GGTGTAACAAACCAAAGGGATAGTAGCAGTATATCCTTTTAGCTTTGGCA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAACAAACCAAAGGGATAGTAGCAGTATATCCTTTTAGCTTTGGCA  541

seq1  GTTAGGGATCGTAGCAGTACATCCTTTTAGCTTTGGCAGTTTGGGAGAGC  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGGATCGTAGCAGTACATCCTTTTAGCTTTGGCAGTTTGGGAGAGC  591

seq1  TGAATGCTCGCTCCCTGTCTGGTGGAGAGGGTGATGGAACAGCTTAGCTA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCTCGCTCCCTGTCTGGTGGAGAGGGTGATGGAACAGCTTAGCTA  641

seq1  CACAGATTGTTCTATGCAAATCCTCATGTGCAGGCTGCTTTTATTAAAAG  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATTGTTCTATGCAAATCCTCATGTGCAGGCTGCTTTTATTAAAAG  691

seq1  TACTATCTCTAATAGCCTGAGCCAAGTCTTGTTTGGTCAGGTAGCTTTCA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATCTCTAATAGCCTGAGCCAAGTCTTGTTTGGTCAGGTAGCTTTCA  741

seq1  AATGATGGCCAGTATTTTTTTTTTTTTTTTTTTTTTTAGCAAACGAAGTT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGGCCAGTATTTTTTTTTTTTTTTTTTTTTTTAGCAAACGAAGTT  791

seq1  TGTGAAACACTTTTATATTGTCTTACAGAGATCTTAGTCATCTAGCACAA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAACACTTTTATATTGTCTTACAGAGATCTTAGTCATCTAGCACAA  841

seq1  TTATTAGTACCAAAGAGCTTGTTTTAGCAAGTTCTGACCTATTCCTGCCT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGTACCAAAGAGCTTGTTTTAGCAAGTTCTGACCTATTCCTGCCT  891

seq1  CCTCTTCCAAAATACTCTAGAAACAACATTGGTTCCAGAAAATGACAGCC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCCAAAATACTCTAGAAACAACATTGGTTCCAGAAAATGACAGCC  941

seq1  TGACACAGAAGCAGGTCCTTCCATACTGCGGGTTCTCATCCCCCATTCGA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACAGAAGCAGGTCCTTCCATACTGCGGGTTCTCATCCCCCATTCGA  991

seq1  AAATTAGAAATCTAATCTCTTCTCAGATGCTGGAAGTTGAAGTCAGAATA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGAAATCTAATCTCTTCTCAGATGCTGGAAGTTGAAGTCAGAATA  1041

seq1  CGGAGTGACAGTTTTCAGTAGCAAAAACACTTTTGTCTTTTAGCTGGTGA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGTGACAGTTTTCAGTAGCAAAAACACTTTTGTCTTTTAGCTGGTGA  1091

seq1  AAATTGTCAAGGGACATTTTCCTTTAGCTTAAAATTCTCTGGGAAAGATA  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTCAAGGGACATTTTCCTTTAGCTTAAAATTCTCTGGGAAAGATA  1141

seq1  GCCTAACTGTGCCTACCAGTAGCAAAAGGCATGGCAACTGCACTGAGCCC  1186
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAACTGTGCCTACCAGTAGCAAAAGGCATGGCAACTGCACTGAGCCC  1191

seq1  CCTTTGAATTC  1197
      |||||||||||
seq2  CCTTTGAATTC  1202


seq1: chr16_24804871_24806043
seq2: B6Ng01-225H10.g_65_1243

seq1  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50

seq1  TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC  100

seq1  CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT  150

seq1  TTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCA  200

seq1  TTAGGTCCCATTTGTCGATTCTCGATCCATAACTCTAGTTTCAGTGGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTCCCATTTGTCGATTCTCGATCCATAACTCTAGTTTCAGTGGAAT  250

seq1  GCAGCCCCCTCTTCTGACCGCTGGAGACAGTGGGTTCTCAAGCAGTGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCCCCTCTTCTGACCGCTGGAGACAGTGGGTTCTCAAGCAGTGTGC  300

seq1  TTCCATGCATTCAACCAAAACACTTGCTCATACACATAAGTAGAAAATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGCATTCAACCAAAACACTTGCTCATACACATAAGTAGAAAATGA  350

seq1  ATAAATCTTTCTAAAATAGTAAAAGAATAGTGTTATGGTCATTCCTAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCTTTCTAAAATAGTAAAAGAATAGTGTTATGGTCATTCCTAAAT  400

seq1  AGTAAAATATACGTTTTCAAGACTTAACTACAATTTTTGACATGTAGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAATATACGTTTTCAAGACTTAACTACAATTTTTGACATGTAGATG  450

seq1  TATACACTAACATGTGAGAATTTGTGGTCGAGCCAGAGAAAACAGAGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACTAACATGTGAGAATTTGTGGTCGAGCCAGAGAAAACAGAGATG  500

seq1  CAAAAGCAAAAGAGAAGGCCATTGGCTCAGTCCTCTGTCTGCAAGAATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCAAAAGAGAAGGCCATTGGCTCAGTCCTCTGTCTGCAAGAATGG  550

seq1  AAACATTGAATAAGTTTCTTCCTTCACACAGACATTTGCCGATTATCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTGAATAAGTTTCTTCCTTCACACAGACATTTGCCGATTATCTGA  600

seq1  GAAGCCCCTAAAATCGATGTGTGTCTTGGATCTAAGAGTATTGAGCAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCCTAAAATCGATGTGTGTCTTGGATCTAAGAGTATTGAGCAGGT  650

seq1  GATAGGCTCTTAACCAGTGCCCCCTGAATGACACTCACTAGTCTTAGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGCTCTTAACCAGTGCCCCCTGAATGACACTCACTAGTCTTAGTCA  700

seq1  TCCTGCCCTGACTGGACACCAGGAGGCTTCTTGTCTTTACTTTAATGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCCTGACTGGACACCAGGAGGCTTCTTGTCTTTACTTTAATGGGC  750

seq1  CAGACATACTTCTGAACTTCCAGCGC-TTTTTTTTTTATGTCAGGCACTT  799
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CAGACATACTTCTGAACTTCCAGCGCTTTTTTTTTTTATGTCAGGCACTT  800

seq1  GGAGCCTTGCCCTGCTAGGGAGACCAGATGAACGACGGAGGTCTGATTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTTGCCCTGCTAGGGAGACCAGATGAACGACGGAGGTCTGATTAA  850

seq1  TTAGTATTTGCTTCATATGTGTTTGTTTTTATTCCTCTCTAAAGTTGTAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTATTTGCTTCATATGTGTTTGTTTTTATTCCTCTCTAAAGTTGTAC  900

seq1  TGGAAAAAGAAAATCCTGCCTAATGCAATAACAAA--TAGTGG-AAAATA  946
      |||||||||||||||||||||||||||||||||||   ||||| ||||||
seq2  TGGAAAAAGAAAATCCTGCCTAATGCAATAACAAAATAAGTGGAAAAATA  950

seq1  CTTGAAAATTGTACTTACTATTTAAATGTAAAGGTCAATATTATTGTAGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAATTGTACTTACTATTTAAATGTAAAGGTCAATATTATTGTAGC  1000

seq1  TGTTAGTAACG-ACAACCATCATATTAAAACCCTAAGCGTAATTCC-ATA  1044
      ||||||||||| |||||||||||||||||| ||||||||||||||| |||
seq2  TGTTAGTAACGAACAACCATCATATTAAAA-CCTAAGCGTAATTCCAATA  1049

seq1  AA--GAGCTTGTTGATTCCCTCCTGCCC-TTTTTTGTCCATCCTCTTAGC  1091
      ||   |||||||||||||||| |||||| ||||||||| || ||||||||
seq2  AAAGAAGCTTGTTGATTCCCT-CTGCCCGTTTTTTGTCAAT-CTCTTAGC  1097

seq1  CCACCCCATAATCCGGTCAC--AAAAATTAAAGCTATTTAGGGGTGTTTG  1139
      |||||| ||||| |||||||  ||||||| ||||||||    || |||||
seq2  CCACCCAATAAT-CGGTCACAAAAAAATTTAAGCTATT---AGGCGTTTG  1143

seq1  AGTCAGCATATTGCC--TATACACG-ATTTATCTTCC  1173
      |||||||||| ||||  |||||||| |||||||||||
seq2  AGTCAGCATA-TGCCTATATACACGAATTTATCTTCC  1179


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