BAC Information

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BAC

Clone NameB6Ng01-226H16
Chromosome16 (Build37)
Map Location 90,544,229 - 90,703,237
singlet/doubletdoublet
Overlap genenone
Upstream geneTiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk
Downstream gene2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2, Olig2, Olig1, Ifnar2, Il10rb, Ifnar1, LOC665939, LOC665947, Ifngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226H16.bB6Ng01-226H16.g
ACCGA040410GA040411
length1,124859
definitionB6Ng01-226H16.b B6Ng01-226H16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,544,229 - 90,545,354)(90,702,385 - 90,703,237)
sequence
gaattctgtcactgggagcctgtacacaccagctgccgagctatggatca
tgctcagtttattttataggatgaaggatattttttaatctttccattta
ggtattccataattataaaggataatcagttatgaatacattcacccaaa
caacttgtattaatattttggttgagtttcttgtagaagctgaggttgga
ggagaaggacggggagaaagaggcagtctgaaactgggggacaccatgta
taagggagcaggactctcttttctcttcagttcaggcaccatggccaatg
ctctagcacaaggctgtgcatttctcaagtcacttcccagtgagtggaca
tgtgagccggctcacatgccctgtgctatagataacaatacgagtgtctg
tttgactttatcgatgttttcacgtcttttattacttccttcctgagact
ccaagcgtgggagctgctgctccaaagctgagtgagtttccagccctcca
cagtcaagtctgtgtgttttccagaaagcctgcatccagttgctgcagtg
tgccagcacgctcgcaatcacacccctaggaaaacctcggtacccaaaag
tgtctgctccctttgataagtaaaacgatagtgtgggttgacataatatg
gatataattacctgcggttttcatccttatatatgtccgctttccacttg
atttactttaggaagcatatagtcatcttcctagctcactctggttttcc
ttgtaaggatcctttaaatcctgacagtgtggaattatttcacagcctac
ctgtggcctctgatgcaaacccttgtgacttacctggtaaggtgtgtctt
tctggcacgaagagggtcttatttctatcaccccaaacccagcaagcttt
tctctctgactcttttccctccctttcatgtttgggaagttcatctgtgg
gatcatccgctaacccacagcacctttgaagtttccttttgggatggttt
cccgttttatgttaatcttaagtcatctggattaatttgggtctaagttg
aagtcaaagtctgatttggatcccttcttgccctgcaagcaacattggat
tctcgctccttcacttattctccc
gaattctgtagacctgtacccagtgatggagttggaacaagagccacatg
ctcacacacacatgcaatggcacccaggtagagatcacaggacagctagc
tggggtcagttgtcttcttccaccatgtgcattccaggagttgaactcag
gttgttaagcttggcagcaggcacctttacccactgaaccagctcgccag
cccacatggatgggtcttgaaacttttactatatactttgaatgtctttt
tttgtgactgaattattcacattttcttaccctggccaaagtcttatgcc
aaatgaatggtagaaccaaagagaggaagaccatgcctcaggggcccagt
aaggagttaacagaaccgtagaagaagatagaagtgggtataacgtgttt
ggagggataccaattcaaacagcatggtcccagatctaggtccagttgga
cctcaaagaggggacaagaggcaagatatgctggcacagtcgctcatcct
aacagatgggagaggggtgacggctatggttggaatgtggtttgttctcc
aaatctgtgtgcttgaggctgaatggtacggaagccagacattgggagca
gatctcctgcctgataacccaggtggagtatggttccttccattgctgtg
ggtagatggaaggggacccttctagtttgtccctgtgtagtgtgttggga
acttgttgatgcaatagctcgcacacgtcaaagccaaggagagctcgctt
atttccccctgagtcagattcgagtggccaaatggctcaaaaaaagcaat
ttcaggtcgttccaaagacaccagttctactgtggaaatggttttatgtg
attttccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_90544229_90545354
seq2: B6Ng01-226H16.b_46_1169

seq1  GAATTCTGTCACTGGGAGCCTGTACACACCAGCTGCCGAGCTATGGATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCACTGGGAGCCTGTACACACCAGCTGCCGAGCTATGGATCA  50

seq1  TGCTCAGTTTATTTTATAGGATGAAGGATATTTTTTAATCTTTCCATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGTTTATTTTATAGGATGAAGGATATTTTTTAATCTTTCCATTTA  100

seq1  GGTATTCCATAATTATAAAGGATAATCAGTTATGAATACATTCACCCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTCCATAATTATAAAGGATAATCAGTTATGAATACATTCACCCAAA  150

seq1  CAACTTGTATTAATATTTTGGTTGAGTTTCTTGTAGAAGCTGAGGTTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGTATTAATATTTTGGTTGAGTTTCTTGTAGAAGCTGAGGTTGGA  200

seq1  GGAGAAGGACGGGGAGAAAGAGGCAGTCTGAAACTGGGGGACACCATGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGGACGGGGAGAAAGAGGCAGTCTGAAACTGGGGGACACCATGTA  250

seq1  TAAGGGAGCAGGACTCTCTTTTCTCTTCAGTTCAGGCACCATGGCCAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGAGCAGGACTCTCTTTTCTCTTCAGTTCAGGCACCATGGCCAATG  300

seq1  CTCTAGCACAAGGCTGTGCATTTCTCAAGTCACTTCCCAGTGAGTGGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGCACAAGGCTGTGCATTTCTCAAGTCACTTCCCAGTGAGTGGACA  350

seq1  TGTGAGCCGGCTCACATGCCCTGTGCTATAGATAACAATACGAGTGTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCCGGCTCACATGCCCTGTGCTATAGATAACAATACGAGTGTCTG  400

seq1  TTTGACTTTATCGATGTTTTCACGTCTTTTATTACTTCCTTCCTGAGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTTTATCGATGTTTTCACGTCTTTTATTACTTCCTTCCTGAGACT  450

seq1  CCAAGCGTGGGAGCTGCTGCTCCAAAGCTGAGTGAGTTTCCAGCCCTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCGTGGGAGCTGCTGCTCCAAAGCTGAGTGAGTTTCCAGCCCTCCA  500

seq1  CAGTCAAGTCTGTGTGTTTTCCAGAAAGCCTGCATCCAGTTGCTGCAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAAGTCTGTGTGTTTTCCAGAAAGCCTGCATCCAGTTGCTGCAGTG  550

seq1  TGCCAGCACGCTCGCAATCACACCCCTAGGAAAACCTCGGTACCCAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGCACGCTCGCAATCACACCCCTAGGAAAACCTCGGTACCCAAAAG  600

seq1  TGTCTGCTCCCTTTGATAAGTAAAACGATAGTGTGGGTTGACATAATATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCTCCCTTTGATAAGTAAAACGATAGTGTGGGTTGACATAATATG  650

seq1  GATATAATTACCTGCGGTTTTCATCCTTATATATGTCCGCTTTCCACTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAATTACCTGCGGTTTTCATCCTTATATATGTCCGCTTTCCACTTG  700

seq1  ATTTACTTTAGGAAGCATATAGTCATCTTCCTAGCTCACTCTGGTTTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTTTAGGAAGCATATAGTCATCTTCCTAGCTCACTCTGGTTTTCC  750

seq1  TTGTAAGGATCCTTTAAATCCTGACAGTGTGGAATTATTTCACAGCCTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGGATCCTTTAAATCCTGACAGTGTGGAATTATTTCACAGCCTAC  800

seq1  CTGTGGCCTCTGATGCAAACCCTTGTGACTTACCTGGTAAGGTGTGTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCCTCTGATGCAAACCCTTGTGACTTACCTGGTAAGGTGTGTCTT  850

seq1  TCTGGCACGAAGAGGGTCTTATTTCTATCACCCCAAACCCAGCAAGCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCACGAAGAGGGTCTTATTTCTATCACCCCAAACCCAGCAAGCTTT  900

seq1  TCTCTCTGACTC-TTTCCCTCCCTTTCATGTTTGGGAAGTTCATCTGTGG  949
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTGACTCTTTTCCCTCCCTTTCATGTTTGGGAAGTTCATCTGTGG  950

seq1  GATCATCCGCTAACCCACAGCACCTTTGAAGTTTCCTTTT-GGATGGTTT  998
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GATCATCCGCTAACCCACAGCACCTTTGAAGTTTCCTTTTGGGATGGTTT  1000

seq1  CCCGTTTTATGTTTAATTCTTTAAGTCATCTGGAATTAATTTTGGTCTAA  1048
      ||||||||||| |||||   ||||||||||||| |||||||| |||||||
seq2  CCCGTTTTATG-TTAAT--CTTAAGTCATCTGG-ATTAATTTGGGTCTAA  1046

seq1  GTTGAAGTCAAAGTTCTGATTT-GATCCCCTC-TGCCCTGCAAAGCCAAC  1096
      ||||||||||||| |||||||| |||||| || |||||||| ||||  | 
seq2  GTTGAAGTCAAAG-TCTGATTTGGATCCCTTCTTGCCCTGC-AAGC--AA  1092

seq1  CATTTGA-TCTCGCTCC-TCACTAATTCTCCC  1126
      |||| || ||||||||| ||||| ||||||||
seq2  CATTGGATTCTCGCTCCTTCACTTATTCTCCC  1124

seq1: chr16_90702385_90703237
seq2: B6Ng01-226H16.g_71_929 (reverse)

seq1  TAAGAAAATCACATATAACCATTTCCACAGTAG-ACT-GTGTCTTTGGGA  48
      || |||||||||||| ||||||||||||||||| ||| |||||||||| |
seq2  TAGGAAAATCACATAAAACCATTTCCACAGTAGAACTGGTGTCTTTGGAA  50

seq1  CGACCTG-AATTGCTTTTTTTGAGCCA-TTGGCCACTCGAATCTGACTCA  96
      ||||||| ||||||||||||||||||| ||||||||||||||||||||||
seq2  CGACCTGAAATTGCTTTTTTTGAGCCATTTGGCCACTCGAATCTGACTCA  100

seq1  GGGGGAAATAAGCGAGCTCTCCTTGGCTTTGACGTGTGCGAGCTATTGCA  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAAATAAGCGAGCTCTCCTTGGCTTTGACGTGTGCGAGCTATTGCA  150

seq1  TCAAC-AGTTCCCAACACACTACACAGGGACAAACTAGAAGGGTCCCCTT  195
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAAGTTCCCAACACACTACACAGGGACAAACTAGAAGGGTCCCCTT  200

seq1  CCATCTACCCACAGCAATGGAAGGAACCATACTCCACCT-GGTTATCAGG  244
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCATCTACCCACAGCAATGGAAGGAACCATACTCCACCTGGGTTATCAGG  250

seq1  CAGGAGATCTGCTCCCAATGTCTGGCTTCCGTACCATTCAGCCTCAAGCA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGATCTGCTCCCAATGTCTGGCTTCCGTACCATTCAGCCTCAAGCA  300

seq1  CACAGATTTGGAGAACAAACCACATTCCAACCATAGCCGTCACCCCTCTC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATTTGGAGAACAAACCACATTCCAACCATAGCCGTCACCCCTCTC  350

seq1  CCATCTGTTAGGATGAGCGACTGTGCCAGCATATCTTGCCTCTTGTCCCC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGTTAGGATGAGCGACTGTGCCAGCATATCTTGCCTCTTGTCCCC  400

seq1  TCTTTGAGGTCCAACTGGACCTAGATCTGGGACCATGCTGTTTGAATTGG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAGGTCCAACTGGACCTAGATCTGGGACCATGCTGTTTGAATTGG  450

seq1  TATCCCTCCAAACACGTTATACCCACTTCTATCTTCTTCTACGGTTCTGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCTCCAAACACGTTATACCCACTTCTATCTTCTTCTACGGTTCTGT  500

seq1  TAACTCCTTACTGGGCCCCTGAGGCATGGTCTTCCTCTCTTTGGTTCTAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCCTTACTGGGCCCCTGAGGCATGGTCTTCCTCTCTTTGGTTCTAC  550

seq1  CATTCATTTGGCATAAGACTTTGGCCAGGGTAAGAAAATGTGAATAATTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTTGGCATAAGACTTTGGCCAGGGTAAGAAAATGTGAATAATTC  600

seq1  AGTCACAAAAAAAGACATTCAAAGTATATAGTAAAAGTTTCAAGACCCAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACAAAAAAAGACATTCAAAGTATATAGTAAAAGTTTCAAGACCCAT  650

seq1  CCATGTGGGCTGGCGAGCTGGTTCAGTGGGTAAAGGTGCCTGCTGCCAAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGGGCTGGCGAGCTGGTTCAGTGGGTAAAGGTGCCTGCTGCCAAG  700

seq1  CTTAACAACCTGAGTTCAACTCCTGGAATGCACATGGTGGAAGAAGACAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACAACCTGAGTTCAACTCCTGGAATGCACATGGTGGAAGAAGACAA  750

seq1  CTGACCCCAGCTAGCTGTCCTGTGATCTCTACCTGGGTGCCATTGCATGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCCCAGCTAGCTGTCCTGTGATCTCTACCTGGGTGCCATTGCATGT  800

seq1  GTGTGTGAGCATGTGGCTCTTGTTCCAACTCCATCACTGGGTACAGGTCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGAGCATGTGGCTCTTGTTCCAACTCCATCACTGGGTACAGGTCT  850

seq1  ACAGAATTC  853
      |||||||||
seq2  ACAGAATTC  859