BAC Information

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BAC

Clone NameB6Ng01-226H18
Chromosome16 (Build37)
Map Location 78,852,820 - 79,025,310
singlet/doubletdoublet
Overlap geneChodl, Prss7
Upstream geneLOC435483, LOC100039561, Cxadr, Btg3, D16Ertd472e, LOC100039605, 4930570E03Rik
Downstream geneEG383172, 1700066C05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226H18.bB6Ng01-226H18.g
ACCGA040414GA040415
length1,161763
definitionB6Ng01-226H18.b B6Ng01-226H18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,024,140 - 79,025,310)(78,852,820 - 78,853,575)
sequence
gaattcatcaagatgtatagaaaattagaattaatcgatgcaagtccaga
gttgagtgattttcaaaaacaatttactatggcagagtcatccattctgg
acgcaagtctagtatctcttccagtgtgcaaagaatgcatgtcctatagt
tcatttttaaatgtttttgtcctttaaacaggtaaaagttcttgttgttc
tttacaggattttacatttctacaccaactgaacagggatggagaagcga
aagagtaggcctttcaagcctctctttagacctcacttcagagcctgtct
gccttcatttttggtacgtttccagtcagtctcttagcttttttttggta
ggaaatatttaaatgccgtctctgtaaatgtttaggtagcaaggcttttg
ttagggaagcaggctcatatttcactatgattttggctaaagtatttgct
aatgcataattttttaagtgatagaagagcaaagtgttagtagaacacaa
accctctgcctgagaaacacccaaagaaaacgaggataatttaaatacaa
gaaaagatgtaaaaagaactagataaatgtattcaatacgttaggcatct
aaacatctttgcttatttccaaaccaggtattacatgtgctgtgaaaatg
tctacaatttaaacattcatatcagcagtgctgaaaccacagacaagata
gtttttcaaaggaaaggaaactatgggaggaactggaattatggtcaagt
cacattaaatgaaacaggagaatttaaggttggcaaagatacttagtaat
ttctgtttctatttttgtgtttgtgtaatagtgtgagtatactttacaat
aatatgataaagtattttgtggagaaaagctagtaactttctttcctttt
ctaatctcctttattctcttaggacatttcttttcatttattcacttttc
acttttatggaataatttgcagtccactcatggtagtccatgaaatccat
aggaaaggaggcaactcctgtccttcacaagcatttttgtatgctgctta
tggggacttgacagttcacagactcaactagttaactctactcactctag
atattgtcttttcctggtagacatcatgccataaaatattcacccaactg
acctactctga

gaattctttgactcttaatgctaaagttctgatttaaatgaaagttttac
gacagcaataattctaaaattctggacggtccattttggactgcagagca
tgcatgatcctttggagagacatttgaagccaagtttgtaggttttattc
cacttaccagttttgaagatagcattattgtttacggagtttaactcatg
gatgattgtgtgattgtacaaaatatggtaagatgatgaggtgggtgttt
gtttgtttactcatttgaaatcagagacggctgacccagaaagttccact
taaatcagaaggagatacatgcacataaggttataatttctaatcctgcc
tgattagtacatcaacagggtaccaagcatcaaaacatatgagctgatgg
gggccattctcctttagactatcatagtaagcatcccaaaaggtattttc
gaaacaaacacgttgcctgtttagtcttttcgtcaaatatgtggttgttt
cttttctttttattgtttttctaggaattaagactaaggtctcatgaatg
ctagagaagataacatataacattgattaaatccctagttcagcataagg
attttaaatgcaaagctaaatatattaaatttttattatttatatgaatt
tttttttgttaaaatggagaaaagttatgatcaaagctgtgattttagta
aacttactgtaggctcaatgtgatggttaaatgaatgtttgtcatttggc
tggattgatggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_79024140_79025310
seq2: B6Ng01-226H18.b_43_1203 (reverse)

seq1  TCAGAGTAGGGTCAGTTGGGTGGATATTTATGGGCATGGATGTCCTACCA  50
      |||||||| ||||||||||||| ||||||   ||||| ||||| ||||||
seq2  TCAGAGTA-GGTCAGTTGGGTGAATATTTTATGGCAT-GATGT-CTACCA  47

seq1  GGAAAAGACAATTATCTAGAGTGAGTAGAGTTAAACTAGGTGGAGTCTGT  100
      ||||||||||| |||||||||||||||||||| ||||| || ||||||||
seq2  GGAAAAGACAA-TATCTAGAGTGAGTAGAGTT-AACTA-GTTGAGTCTGT  94

seq1  GAACTGTTCAAAGTCCCCATAAGGCAGCATACAAAAATGCTTGGTGGAAG  150
      |||||||   |||||||||||| ||||||||||||||||||||   ||||
seq2  GAACTGT--CAAGTCCCCATAA-GCAGCATACAAAAATGCTTG--TGAAG  139

seq1  GACAGGAGTTGCCTCCTTTCCTATGGATTTCATGGACTACCATGAGTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGAGTTGCCTCCTTTCCTATGGATTTCATGGACTACCATGAGTGGA  189

seq1  CTGCAAATTATTCCATAAAAGTGAAAAGTGAATAAATGAAAAGAAATGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAATTATTCCATAAAAGTGAAAAGTGAATAAATGAAAAGAAATGTC  239

seq1  CTAAGAGAATAAAGGAGATTAGAAAAGGAAAGAAAGTTACTAGCTTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGAATAAAGGAGATTAGAAAAGGAAAGAAAGTTACTAGCTTTTCT  289

seq1  CCACAAAATACTTTATCATATTATTGTAAAGTATACTCACACTATTACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAAATACTTTATCATATTATTGTAAAGTATACTCACACTATTACAC  339

seq1  AAACACAAAAATAGAAACAGAAATTACTAAGTATCTTTGCCAACCTTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAAAAATAGAAACAGAAATTACTAAGTATCTTTGCCAACCTTAAA  389

seq1  TTCTCCTGTTTCATTTAATGTGACTTGACCATAATTCCAGTTCCTCCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTGTTTCATTTAATGTGACTTGACCATAATTCCAGTTCCTCCCAT  439

seq1  AGTTTCCTTTCCTTTGAAAAACTATCTTGTCTGTGGTTTCAGCACTGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCTTTCCTTTGAAAAACTATCTTGTCTGTGGTTTCAGCACTGCTG  489

seq1  ATATGAATGTTTAAATTGTAGACATTTTCACAGCACATGTAATACCTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAATGTTTAAATTGTAGACATTTTCACAGCACATGTAATACCTGGT  539

seq1  TTGGAAATAAGCAAAGATGTTTAGATGCCTAACGTATTGAATACATTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAATAAGCAAAGATGTTTAGATGCCTAACGTATTGAATACATTTAT  589

seq1  CTAGTTCTTTTTACATCTTTTCTTGTATTTAAATTATCCTCGTTTTCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTCTTTTTACATCTTTTCTTGTATTTAAATTATCCTCGTTTTCTTT  639

seq1  GGGTGTTTCTCAGGCAGAGGGTTTGTGTTCTACTAACACTTTGCTCTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTTCTCAGGCAGAGGGTTTGTGTTCTACTAACACTTTGCTCTTCT  689

seq1  ATCACTTAAAAAATTATGCATTAGCAAATACTTTAGCCAAAATCATAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTTAAAAAATTATGCATTAGCAAATACTTTAGCCAAAATCATAGTG  739

seq1  AAATATGAGCCTGCTTCCCTAACAAAAGCCTTGCTACCTAAACATTTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGAGCCTGCTTCCCTAACAAAAGCCTTGCTACCTAAACATTTACA  789

seq1  GAGACGGCATTTAAATATTTCCTACCAAAAAAAAGCTAAGAGACTGACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACGGCATTTAAATATTTCCTACCAAAAAAAAGCTAAGAGACTGACTG  839

seq1  GAAACGTACCAAAAATGAAGGCAGACAGGCTCTGAAGTGAGGTCTAAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACGTACCAAAAATGAAGGCAGACAGGCTCTGAAGTGAGGTCTAAAGA  889

seq1  GAGGCTTGAAAGGCCTACTCTTTCGCTTCTCCATCCCTGTTCAGTTGGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTTGAAAGGCCTACTCTTTCGCTTCTCCATCCCTGTTCAGTTGGTG  939

seq1  TAGAAATGTAAAATCCTGTAAAGAACAACAAGAACTTTTACCTGTTTAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATGTAAAATCCTGTAAAGAACAACAAGAACTTTTACCTGTTTAAA  989

seq1  GGACAAAAACATTTAAAAATGAACTATAGGACATGCATTCTTTGCACACT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAAAACATTTAAAAATGAACTATAGGACATGCATTCTTTGCACACT  1039

seq1  GGAAGAGATACTAGACTTGCGTCCAGAATGGATGACTCTGCCATAGTAAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGATACTAGACTTGCGTCCAGAATGGATGACTCTGCCATAGTAAA  1089

seq1  TTGTTTTTGAAAATCACTCAACTCTGGACTTGCATC-ATTAATTCTAATT  1149
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTGTTTTTGAAAATCACTCAACTCTGGACTTGCATCGATTAATTCTAATT  1139

seq1  TTCTATACATCTTGATGAATTC  1171
      ||||||||||||||||||||||
seq2  TTCTATACATCTTGATGAATTC  1161


seq1: chr16_78852820_78853575
seq2: B6Ng01-226H18.g_66_828

seq1  GAATTCTTTGACTCTTAATGCTAAAGTTCTGATTTAAATGAAAGTTTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGACTCTTAATGCTAAAGTTCTGATTTAAATGAAAGTTTTAC  50

seq1  GACAGCAATAATTCTAAAATTCTGGACGGTCCATTTTGGACTGCAGAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAATAATTCTAAAATTCTGGACGGTCCATTTTGGACTGCAGAGCA  100

seq1  TGCATGATCCTTTGGAGAGACATTTGAAGCCAAGTTTGTAGGTTTTATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGATCCTTTGGAGAGACATTTGAAGCCAAGTTTGTAGGTTTTATTC  150

seq1  CACTTACCAGTTTTGAAGATAGCATTATTGTTTACGGAGTTTAACTCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTACCAGTTTTGAAGATAGCATTATTGTTTACGGAGTTTAACTCATG  200

seq1  GATGATTGTGTGATTGTACAAAATATGGTAAGATGATGAGGTGGGTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTGTGTGATTGTACAAAATATGGTAAGATGATGAGGTGGGTGTTT  250

seq1  GTTTGTTTACTCATTTGAAATCAGAGACGGCTGACCCAGAAAGTTCCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTACTCATTTGAAATCAGAGACGGCTGACCCAGAAAGTTCCACT  300

seq1  TAAATCAGAAGGAGATACATGCACATAAGGTTATAATTTCTAATCCTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCAGAAGGAGATACATGCACATAAGGTTATAATTTCTAATCCTGCC  350

seq1  TGATTAGTACATCAACAGGGTACCAAGCATCAAAACATATGAGCTGATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAGTACATCAACAGGGTACCAAGCATCAAAACATATGAGCTGATGG  400

seq1  GGGCCATTCTCCTTTAGACTATCATAGTAAGCATCCCAAAAGGTATTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCATTCTCCTTTAGACTATCATAGTAAGCATCCCAAAAGGTATTTTC  450

seq1  GAAACAAACACGTTGCCTGTTTAGTCTTTTCGTCAAATATGTGGTTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAACACGTTGCCTGTTTAGTCTTTTCGTCAAATATGTGGTTGTTT  500

seq1  CTTTTCTTTTTATTGTTTTTCTAGGAATTAAGACTAAGGTCTCATGAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTTTATTGTTTTTCTAGGAATTAAGACTAAGGTCTCATGAATG  550

seq1  CTAGAGAAGATAACATATAACATTGATTAAATCCCTAGTTCAGCATAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAAGATAACATATAACATTGATTAAATCCCTAGTTCAGCATAAGG  600

seq1  ATTTT-AATGCAAAGCTAAATATATTAAA-TTTTATTA-TTATATGAATT  647
      ||||| ||||||||||||||||||||||| |||||||| |||||||||||
seq2  ATTTTAAATGCAAAGCTAAATATATTAAATTTTTATTATTTATATGAATT  650

seq1  TTTTTTTGTTAAAATGGAGAAAAGTTATGATCAAAGCTGTGA-TTTAGTA  696
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTTTTTGTTAAAATGGAGAAAAGTTATGATCAAAGCTGTGATTTTAGTA  700

seq1  AACTTACTGTAGGCTCAATGTGATGGTT-AATG-ATGTTTGTCAATTGGC  744
      |||||||||||||||||||||||||||| |||| |||||||||| |||||
seq2  AACTTACTGTAGGCTCAATGTGATGGTTAAATGAATGTTTGTCATTTGGC  750

seq1  TGGATTGA-GGAT  756
      |||||||| ||||
seq2  TGGATTGATGGAT  763


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