BAC Information

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BAC

Clone NameB6Ng01-226K17
Chromosome16 (Build37)
Map Location 72,960,126 - 73,139,299
singlet/doubletdoublet
Overlap geneRobo1
Upstream genenone
Downstream geneLOC100039310, LOC100039318, LOC100039326, Robo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226K17.bB6Ng01-226K17.g
ACCGA040544GA040545
length1,1651,091
definitionB6Ng01-226K17.b B6Ng01-226K17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,960,126 - 72,961,289)(73,138,225 - 73,139,299)
sequence
gaattcttctaaatgtgaggattctaggttaagtaataactcttcacaat
acaactctatttcattctataaatatgcacttagcaattttagtttaaag
ggagggtggtcagtgattatactgtggtgtaggaaatgaaggcaggaccc
tgtagggactgtggtgccatgatctgattccctgtgtttcatttctctag
agccgccacatttcgttgtaaaacctcgggaccaggtggttgccttggga
agaactgtgacgtttcagtgcgaagcaactggaaatcctcaaccagctat
cttttggaggagagaggggagtcaggtataaccattttctaccttttttt
tttaaacagaaaatacgggtattagttatctgcaaagaaaaatccaagta
ttgtgaaatgagacaccaatcacatgagcaagaaatggattagtcaaaaa
tcccagaaatatttagaatgaagaggaaagagagaggggtccccgtatga
attctcagagccattgtcagtgcctcattttaacactcagagtggtgtgt
ataagccaccattttgccatatacatgttccttttactttggaactgtcc
acactaatagagcctcgtgtattctctctatatgcctctcaattgccttc
tctgttatgccgctatctagagtcacacatgaacagatttaagtgtattg
gaaatgaaagagagatgtttgagtctatgtaagttctgcagaagctccaa
atgatgtaaaattccctttagcatcaatgtcaggccccctcgagttcagt
actctctagtctttaaaactatcatgtgtactcattacctgcagatagat
cgtgttttctaaacattctgtaatctagaatattatcagtgtaatacgta
aagcaacagcagagtttaaaatcccttcttatctcatctctgtgattttt
tttccttcttaaataagtgaaataccttacttgtaaaacttaattccatt
cattttcagtatgggtcatttcttggtctgtcttatgctgcttgactcag
tgttaaggaataccattgtccctcttgctaaggtttttttatgaagaagc
aggcaatagcttactgactgacctctgatcttttcagggccagtacacca
acttccatggttttg
gaattctataggttatccctgtaacctatagagaggatgcccgtaccatg
ctgtagcttgttttccgatgccccaacaatggctttgttgagtgcactga
tttatcagcttctccactctctatgaaagttcacatagctaagtcttttt
tttttttttttttttttttttgctatttcagcatattattcaggttaact
taaatctgtgctctgaatgtataacacagattgctttcttttttttcttt
ccctccttttcccctttgttttgtagagttagtattttacattggcattt
ctagccataagattcttcttactaccgccttttccttgcttgctctgctg
tttactggtatattggagaatactcatacccttggcataacttccatgtc
ttccaggtctgtgatatctatagagcaatcttttgtcaggtagtagcaaa
tatttccctctttccatctcccattaagttgagtatatttttctgttatt
gtactgtttggtaagtatgtattgacagggattttctccagttagatagt
acccttaagagtaatgtttgtactactgagtaccttgtgccgcaggtcaa
aataataaagaataaaattccagggcattattcaaacattaaaatagcag
ggtaagtggaggagtgtattcagtttaacatcaactggaggtttgaaatt
gcttaagtggtaatggtctttttttaaatgtggaaatttattgataatta
ctctgtgggatataactatgggtttaggtcatagtgagtttgtgaaggga
cccatttgtcatgaaaaagtgatagactgatagaacaggacgaggccccc
ggtgcagttgaggagtgcccagatgagctatcctgagctggatccacgtt
ccttcactgaggttctaatggatatagcaagaagaggagactggttcttc
ctcctttggctccagaatctcctcagcctagcttttggttcttgagaatg
tcatatcatggatctccgaatgatcaggtttttcctgcaaacagaacggc
aatcctttaatcaattctttaagtcagaagcttgctttatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_72960126_72961289
seq2: B6Ng01-226K17.b_48_1212

seq1  GAATTCTTCTAAATGTGAGGATTCTAGGTTAAGTAATAACTCTTCACAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTAAATGTGAGGATTCTAGGTTAAGTAATAACTCTTCACAAT  50

seq1  ACAACTCTATTTCATTCTATAAATATGCACTTAGCAATTTTAGTTTAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTCTATTTCATTCTATAAATATGCACTTAGCAATTTTAGTTTAAAG  100

seq1  GGAGGGTGGTCAGTGATTATACTGTGGTGTAGGAAATGAAGGCAGGACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGTGGTCAGTGATTATACTGTGGTGTAGGAAATGAAGGCAGGACCC  150

seq1  TGTAGGGACTGTGGTGCCATGATCTGATTCCCTGTGTTTCATTTCTCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGGACTGTGGTGCCATGATCTGATTCCCTGTGTTTCATTTCTCTAG  200

seq1  AGCCGCCACATTTCGTTGTAAAACCTCGGGACCAGGTGGTTGCCTTGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGCCACATTTCGTTGTAAAACCTCGGGACCAGGTGGTTGCCTTGGGA  250

seq1  AGAACTGTGACGTTTCAGTGCGAAGCAACTGGAAATCCTCAACCAGCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGTGACGTTTCAGTGCGAAGCAACTGGAAATCCTCAACCAGCTAT  300

seq1  CTTTTGGAGGAGAGAGGGGAGTCAGGTATAACCATTTTCTACCTTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGAGGAGAGAGGGGAGTCAGGTATAACCATTTTCTACCTTTTTTT  350

seq1  TTTAAACAGAAAATACGGGTATTAGTTATCTGCAAAGAAAAATCCAAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACAGAAAATACGGGTATTAGTTATCTGCAAAGAAAAATCCAAGTA  400

seq1  TTGTGAAATGAGACACCAATCACATGAGCAAGAAATGGATTAGTCAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAAATGAGACACCAATCACATGAGCAAGAAATGGATTAGTCAAAAA  450

seq1  TCCCAGAAATATTTAGAATGAAGAGGAAAGAGAGAGGGGTCCCCGTATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAAATATTTAGAATGAAGAGGAAAGAGAGAGGGGTCCCCGTATGA  500

seq1  ATTCTCAGAGCCATTGTCAGTGCCTCATTTTAACACTCAGAGTGGTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCAGAGCCATTGTCAGTGCCTCATTTTAACACTCAGAGTGGTGTGT  550

seq1  ATAAGCCACCATTTTGCCATATACATGTTCCTTTTACTTTGGAACTGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCCACCATTTTGCCATATACATGTTCCTTTTACTTTGGAACTGTCC  600

seq1  ACACTAATAGAGCCTCGTGTATTCTCTCTATATGCCTCTCAATTGCCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAATAGAGCCTCGTGTATTCTCTCTATATGCCTCTCAATTGCCTTC  650

seq1  TCTGTTATGCCGCTATCTAGAGTCACACATGAACAGATTTAAGTGTATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTATGCCGCTATCTAGAGTCACACATGAACAGATTTAAGTGTATTG  700

seq1  GAAATGAAAGAGAGATGTTTGAGTCTATGTAAGTTCTGCAGAAGCTCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAAAGAGAGATGTTTGAGTCTATGTAAGTTCTGCAGAAGCTCCAA  750

seq1  ATGATGTAAAATTCCCTTTAGCATCAATGTCAGGCCCCCTCGAGTTCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTAAAATTCCCTTTAGCATCAATGTCAGGCCCCCTCGAGTTCAGT  800

seq1  ACTCTCTAGTCTTTAAAACTATCATGTGTACTCATTACCTGCAGATAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTAGTCTTTAAAACTATCATGTGTACTCATTACCTGCAGATAGAT  850

seq1  CGTGTTTTCTAAACATTCTGTAATCTAGAATATTATCAGTGTAATACGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTTTTCTAAACATTCTGTAATCTAGAATATTATCAGTGTAATACGTA  900

seq1  AAGCAACAGCAGAGTTTAAAATCCCTTCTTATCTCATCTCTGTGATTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACAGCAGAGTTTAAAATCCCTTCTTATCTCATCTCTGTGATTTTT  950

seq1  TTTCCTTCTTAAATAAGGTGAAATACCTTACTTGTAAAACTTAATTCCAT  1000
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTCCTTCTTAAATAA-GTGAAATACCTTACTTGTAAAACTTAATTCCAT  999

seq1  TCATTTTCAGTAT-GGTCATTTCTTGGTCTGTCTTATTGCTGCTTGACTC  1049
      ||||||||||||| |||||||||||||||||||||| |||||||||||||
seq2  TCATTTTCAGTATGGGTCATTTCTTGGTCTGTCTTA-TGCTGCTTGACTC  1048

seq1  AGTGTTAAGG-ATACCATTGT-CCTCCTGCTAAAGTTTTTTTATGAAG-A  1096
      |||||||||| |||||||||| |||| |||||| |||||||||||||| |
seq2  AGTGTTAAGGAATACCATTGTCCCTCTTGCTAAGGTTTTTTTATGAAGAA  1098

seq1  GCAAGCAAATAGCTTACTGACTGAACTCTGATC-TTTCAAGGGCAGTACC  1145
      ||| || ||||||||||||||||| |||||||| ||||| || ||||| |
seq2  GCAGGC-AATAGCTTACTGACTGACCTCTGATCTTTTCAGGGCCAGTA-C  1146

seq1  ACCAACTTCCATGTTTTTG  1164
      ||||||||||||| |||||
seq2  ACCAACTTCCATGGTTTTG  1165

seq1: chr16_73138225_73139299
seq2: B6Ng01-226K17.g_66_1156 (reverse)

seq1  GATAAAGCACGCTTCTGAC-TAGAGAA-TGATTAAAAGGATGCCG-TCTG  47
      ||||||||| ||||||||| || |||| |||||||| |  ||||| ||||
seq2  GATAAAGCAAGCTTCTGACTTAAAGAATTGATTAAAGGATTGCCGTTCTG  50

seq1  TTTGCAGGAAAAACTTGATCAT--CGAGATCCATGATAATGACA-TCTCA  94
      |||||||||||||| |||||||   |||||||||||| |||||| |||||
seq2  TTTGCAGGAAAAACCTGATCATTCGGAGATCCATGAT-ATGACATTCTCA  99

seq1  AGAACCAAAAGCTA-GCTGA-GAGATTCT-GAGACAAAGGAGGAGGAA-C  140
      |||||||||||||| ||||| |||||||| ||| |||||||||| ||| |
seq2  AGAACCAAAAGCTAGGCTGAGGAGATTCTGGAGCCAAAGGAGGAAGAACC  149

seq1  AGTCT-CTCTTCTTGCTATATC--ATAGAACCTCAGTG-AGGAACGT-GA  185
      ||||| ||||||||||||||||   ||||||||||||| |||||||| ||
seq2  AGTCTCCTCTTCTTGCTATATCCATTAGAACCTCAGTGAAGGAACGTGGA  199

seq1  TCCAGCTCAGGATAGCTCATCTTGGCACTCCTC-ACTGCAACGGGGGCCT  234
      |||||||||||||||||||||| |||||||||| |||||| |||||||||
seq2  TCCAGCTCAGGATAGCTCATCTGGGCACTCCTCAACTGCACCGGGGGCCT  249

seq1  CGTCCTGGTCTATCAGTCTATCACTTTTTCATGACAAATGGGTCCCTTCA  284
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCTGTTCTATCAGTCTATCACTTTTTCATGACAAATGGGTCCCTTCA  299

seq1  CAAACTCACTATGACCTAAACCCATAG-TATATCCCACAGAGTAATTATC  333
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAAACTCACTATGACCTAAACCCATAGTTATATCCCACAGAGTAATTATC  349

seq1  AATAAATTTCCACATTTAAAAAAAGACCATTACCACTTAAGCAATTTCAA  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTTCCACATTTAAAAAAAGACCATTACCACTTAAGCAATTTCAA  399

seq1  ACCTCCAGTTGATGTTAAACTGAATACACTCCTCCACTTACCCTGCTATT  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCAGTTGATGTTAAACTGAATACACTCCTCCACTTACCCTGCTATT  449

seq1  TTAATGTTTGAATAATGCCCTGGAATTTTATTCTTTATTATTTTGACCTG  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTTTGAATAATGCCCTGGAATTTTATTCTTTATTATTTTGACCTG  499

seq1  CGGCACAAGGTACTCAGTAGTACAAACATTACTCTTAAGGGTACTATCTA  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCACAAGGTACTCAGTAGTACAAACATTACTCTTAAGGGTACTATCTA  549

seq1  ACTGGAGAAAATCCCTGTCAATACATACTTACCAAACAGTACAATAACAG  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGAAAATCCCTGTCAATACATACTTACCAAACAGTACAATAACAG  599

seq1  AAAAATATACTCAACTTAATGGGAGATGGAAAGAGGGAAATATTTGCTAC  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATACTCAACTTAATGGGAGATGGAAAGAGGGAAATATTTGCTAC  649

seq1  TACCTGACAAAAGATTGCTCTATAGATATCACAGACCTGGAAGACATGGA  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGACAAAAGATTGCTCTATAGATATCACAGACCTGGAAGACATGGA  699

seq1  AGTTATGCCAAGGGTATGAGTATTCTCCAATATACCAGTAAACAGCAGAG  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGCCAAGGGTATGAGTATTCTCCAATATACCAGTAAACAGCAGAG  749

seq1  CAAGCAAGGAAAAGGCGGTAGTAAGAAGAATCTTATGGCTAGAAATGCCA  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAAGGAAAAGGCGGTAGTAAGAAGAATCTTATGGCTAGAAATGCCA  799

seq1  ATGTAAAATACTAACTCTACAAAACAAAGGGGAAAAGGAGGGAAAGAAAA  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAAATACTAACTCTACAAAACAAAGGGGAAAAGGAGGGAAAGAAAA  849

seq1  AAAAGAAAGCAATCTGTGTTATACATTCAGAGCACAGATTTAAGTTAACC  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAGCAATCTGTGTTATACATTCAGAGCACAGATTTAAGTTAACC  899

seq1  TGAATAATATGCTGAAATAGCAAAAAAAAAAAAAAAAAAAAAAAAAAGAC  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAATATGCTGAAATAGCAAAAAAAAAAAAAAAAAAAAAAAAAAGAC  949

seq1  TTAGCTATGTGAACTTTCATAGAGAGTGGAGAAGCTGATAAATCAGTGCA  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTATGTGAACTTTCATAGAGAGTGGAGAAGCTGATAAATCAGTGCA  999

seq1  CTCAACAAAGCCATTGTTGGGGCATCGGAAAACAAGCTACAGCATGGTAC  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACAAAGCCATTGTTGGGGCATCGGAAAACAAGCTACAGCATGGTAC  1049

seq1  GGGCATCCTCTCTATAGGTTACAGGGATAACCTATAGAATTC  1075
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATCCTCTCTATAGGTTACAGGGATAACCTATAGAATTC  1091