BAC Information

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BAC

Clone NameB6Ng01-226N12
Chromosome16 (Build37)
Map Location 66,807,838 - 66,970,811
singlet/doubletdoublet
Overlap geneCadm2
Upstream geneVgll3, LOC664846, LOC100039035
Downstream gene9330155M09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226N12.bB6Ng01-226N12.g
ACCGA040668GA040669
length1,142491
definitionB6Ng01-226N12.b B6Ng01-226N12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,969,675 - 66,970,811)(66,807,838 - 66,808,497)
sequence
gaattcttaccctttgctaaatgcagttatccaatttaatttcagtcaag
gagaactaaaagatcagctttaaaaatctgtttatggtctttagtaataa
aagatatttctaaagatcaaggctcttgagaggtgtgtgtgtcagtttct
ccacatatttatttgagttcccaaagtctccagagcagccccttcctgac
tctaactctgccggagtagaaattaaaatggtgagttaagaggcacatgt
tcttaactgggcattcacaaccctgtttctaaacctgatttgcagtttac
atttgaaacaaaagtcatgtttgaccatttctctgagcactgaaataggt
taaagtgttttctgtgctcttctgtaaatgtcagtgaaaaatgtcaactt
tgaacctcggcacaatgtttgtttgtgcgttttcttgctttacacacgag
cctctccttttagcgtctttctccctaagaggcagcgctttgttaatacg
gcggtgtacaattttctgacaagtgctgaacctatgtgaacaaaaaatgg
ttcttatttatgatgtgtcaaatgactgttctgagagtagaccttttagg
ttgcatccagcctttaatttgactgaatttaaatggcacaaaatgccttt
tatttgggccttggctggcacattatatatctcatttcaatgaaaaacat
tcacatgcaaatacggtttgtttggagtgaggacaaattcaactatcatg
actgatgaaggcttttgatcgcagttctacaaacggaaaccttgaaaaag
aaaaggctatttggacaggcatctgcaagcccatgaattatttacttcac
attattcataaatctctttgaagaggaggtcttatgaggttttaaaggag
gcgaaatcatagttgtgttgccaacttcagtgtgtgctctaagtgctgcc
tacaagggagcagttgctttcactgctaagtcctcctcagccgggaagtg
tgtcatatgccttgttgccagcaagtccatccctgaagctccttaggaac
ttgaatcatgtttccaatctacttcgtatttctcttttcaggagtgcact
tgactgtattgcaaagttaaataacacagccataggcgagga

aatctcagattttacataattaaaacatgaccaacccctgaactaatttt
taatgttgttcttgttttaggggcaaatgcttactgcccaagagattccg
cattcttgagtttataaccttcatcctcagtttcccactaggtagggttt
ttggaaatgtgtcttatcttttgatggggggaataacactgtaagggagg
acgggggggggggactgctatcactatataaattattccactgttatctc
tttcagatattgttatttcatgcctgaaatatctcctactcttctagcat
tccaattccttcttcaaaccctaaattccagtgctaaatctcagaatacc
atgtgtgaaaaggtacactcattcctctgtagctctgtttcctcttctgc
agtgcaataattgaccacaaacttagtgaatgaaaacaaaacaaattttc
tctcctgtgggttataaagctcaatctggttttccctttac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_66969675_66970811
seq2: B6Ng01-226N12.b_46_1187 (reverse)

seq1  TCCTCGCCCTAT-GCTGTGTTATTTAACTTTGCCATACAGTCCAGTGCAC  49
      |||||| ||||| |||||||||||||||||||| |||||||| |||||||
seq2  TCCTCG-CCTATGGCTGTGTTATTTAACTTTGCAATACAGTCAAGTGCAC  49

seq1  T-CTGAAAGAAGAAATACGAAGTAGATGGGAAACATGATTCAAGTTCCT-  97
      | ||||||  ||||||||||||||||| ||||||||||||||||||||| 
seq2  TCCTGAAAAGAGAAATACGAAGTAGATTGGAAACATGATTCAAGTTCCTA  99

seq1  AGGAGCTTCA-GGATGGACTTGCTGGCA--CAGGCATATGACACACTTCC  144
      |||||||||| |||||||||||||||||   |||||||||||||||||||
seq2  AGGAGCTTCAGGGATGGACTTGCTGGCAACAAGGCATATGACACACTTCC  149

seq1  CGGCTGAGGAGGACTTAGCAGTGAAAGCAACTGCTCCCCTTGTAGGCAGC  194
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CGGCTGAGGAGGACTTAGCAGTGAAAGCAACTGCT-CCCTTGTAGGCAGC  198

seq1  ACTTAGAGCACACACTGAAGTTGGCAACACAACTATGATTTCGCCTCC-T  243
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACTTAGAGCACACACTGAAGTTGGCAACACAACTATGATTTCGCCTCCTT  248

seq1  TAAAACCTCATAAGACCTCCTCTTCAAAGAGATTTATGAATAATGTGAAG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCTCATAAGACCTCCTCTTCAAAGAGATTTATGAATAATGTGAAG  298

seq1  TAAATAATTCATGGGCTTGCAGATGCCTGTCCAAATAGCCTTTTCTTTTT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATTCATGGGCTTGCAGATGCCTGTCCAAATAGCCTTTTCTTTTT  348

seq1  CAAGGTTTCCGTTTGTAGAACTGCGATCAAAAGCCTTCATCAGTCATGAT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTTTCCGTTTGTAGAACTGCGATCAAAAGCCTTCATCAGTCATGAT  398

seq1  AGTTGAATTTGTCCTCACTCCAAACAAACCGTATTTGCATGTGAATGTTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAATTTGTCCTCACTCCAAACAAACCGTATTTGCATGTGAATGTTT  448

seq1  TTCATTGAAATGAGATATATAATGTGCCAGCCAAGGCCCAAATAAAAGGC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGAAATGAGATATATAATGTGCCAGCCAAGGCCCAAATAAAAGGC  498

seq1  ATTTTGTGCCATTTAAATTCAGTCAAATTAAAGGCTGGATGCAACCTAAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTGCCATTTAAATTCAGTCAAATTAAAGGCTGGATGCAACCTAAA  548

seq1  AGGTCTACTCTCAGAACAGTCATTTGACACATCATAAATAAGAACCATTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTACTCTCAGAACAGTCATTTGACACATCATAAATAAGAACCATTT  598

seq1  TTTGTTCACATAGGTTCAGCACTTGTCAGAAAATTGTACACCGCCGTATT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCACATAGGTTCAGCACTTGTCAGAAAATTGTACACCGCCGTATT  648

seq1  AACAAAGCGCTGCCTCTTAGGGAGAAAGACGCTAAAAGGAGAGGCTCGTG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGCGCTGCCTCTTAGGGAGAAAGACGCTAAAAGGAGAGGCTCGTG  698

seq1  TGTAAAGCAAGAAAACGCACAAACAAACATTGTGCCGAGGTTCAAAGTTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGCAAGAAAACGCACAAACAAACATTGTGCCGAGGTTCAAAGTTG  748

seq1  ACATTTTTCACTGACATTTACAGAAGAGCACAGAAAACACTTTAACCTAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTTCACTGACATTTACAGAAGAGCACAGAAAACACTTTAACCTAT  798

seq1  TTCAGTGCTCAGAGAAATGGTCAAACATGACTTTTGTTTCAAATGTAAAC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGCTCAGAGAAATGGTCAAACATGACTTTTGTTTCAAATGTAAAC  848

seq1  TGCAAATCAGGTTTAGAAACAGGGTTGTGAATGCCCAGTTAAGAACATGT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATCAGGTTTAGAAACAGGGTTGTGAATGCCCAGTTAAGAACATGT  898

seq1  GCCTCTTAACTCACCATTTTAATTTCTACTCCGGCAGAGTTAGAGTCAGG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTTAACTCACCATTTTAATTTCTACTCCGGCAGAGTTAGAGTCAGG  948

seq1  AAGGGGCTGCTCTGGAGACTTTGGGAACTCAAATAAATATGTGGAGAAAC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGCTGCTCTGGAGACTTTGGGAACTCAAATAAATATGTGGAGAAAC  998

seq1  TGACACACACACCTCTCAAGAGCCTTGATCTTTAGAAATATCTTTTATTA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACACACACCTCTCAAGAGCCTTGATCTTTAGAAATATCTTTTATTA  1048

seq1  CTAAAGACCATAAACAGATTTTTAAAGCTGATCTTTTAGTTCTCCTTGAC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGACCATAAACAGATTTTTAAAGCTGATCTTTTAGTTCTCCTTGAC  1098

seq1  TGAAATTAAATTGGATAACTGCATTTAGCAAAGGGTAAGAATTC  1137
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTAAATTGGATAACTGCATTTAGCAAAGGGTAAGAATTC  1142


seq1: chr16_66807838_66808497
seq2: B6Ng01-226N12.g_67_563

seq1  GAATTCAATCTCAGATTTTACATAATTAAAACATGACCAACCCCTGAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCTCAGATTTTACATAATTAAAACATGACCAACCCCTGAACT  50

seq1  AATTTTTAATGTTGTTCTTGTTTTAGGGGCAAATGCTTACTGCCCAAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTAATGTTGTTCTTGTTTTAGGGGCAAATGCTTACTGCCCAAGAG  100

seq1  ATTCCGCATTCTTGAGTTTATAACCTTCATCCTCAGTTTCCCACTAGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCGCATTCTTGAGTTTATAACCTTCATCCTCAGTTTCCCACTAGGTA  150

seq1  GGGTTTTTGGAAATGTGTCTTATCTTTTGATGGGGGGAATAACACTGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTTGGAAATGTGTCTTATCTTTTGATGGGGGGAATAACACTGTAA  200

seq1  GGGAGGACGGGGGGGGGGGACTGCTATCACTATATAAATTATTCCACTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGACGGGGGGGGGGGACTGCTATCACTATATAAATTATTCCACTGT  250

seq1  TATCTCTTTCAGATATTGTTATTTCATGCCTGAAATATCTCCTACTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTTTCAGATATTGTTATTTCATGCCTGAAATATCTCCTACTCTTC  300

seq1  TAGCATTCCAATTCCTTCTTCAAACCCTAAATTCCAGTGCTAAATCTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTCCAATTCCTTCTTCAAACCCTAAATTCCAGTGCTAAATCTCAG  350

seq1  AATACCATGTGTGAAAAGGTACACTCATTCCTCTGTAGCTCTGTTTCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCATGTGTGAAAAGGTACACTCATTCCTCTGTAGCTCTGTTTCCTC  400

seq1  TTCTGCAGTGCAATAAATGACCACAAACTTAGTGAATGAAAACAAAACAA  450
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTCTGCAGTGCAATAATTGACCACAAACTTAGTGAATGAAAACAAAACAA  450

seq1  ATTTGCTCTCCTGTGGGTTATAAAGCTCAATCTGGTTTTCCCATTACAAA  500
      |||| ||||||||||||||||||||||||||||||||||||| ||||   
seq2  ATTTTCTCTCCTGTGGGTTATAAAGCTCAATCTGGTTTTCCCTTTAC---  497

seq1  ATCAAAAATCTTCCTGGAAGCCTAAAGTTCCCTTGTAAGCCTCATAGACT  550
                                                        
seq2  --------------------------------------------------  497

seq1  TCTTCAAGTTCATTGGTGCTCAGAAGTTCATTTTTTTTTTCTTATTCTGT  600
                                                        
seq2  --------------------------------------------------  497

seq1  TCATCTGAGGATTCAGTTTTCTTATTGATGATGGGATGTATCTATGCTCC  650
                                                        
seq2  --------------------------------------------------  497

seq1  TAGAATTTAC  660
                
seq2  ----------  497


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