BAC Information

Click to search

BAC

Clone NameB6Ng01-227L01
Chromosome16 (Build37)
Map Location 54,822,306 - 54,823,406
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433027, LOC100043442, LOC100043449
Downstream geneLOC667927, LOC436421, Zpld1, Nfkbiz
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227L01.bB6Ng01-227L01.g
ACCGA041297GA041298
length1,1571,164
definitionB6Ng01-227L01.b B6Ng01-227L01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaatacctaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggtggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatctagaagatgccccaactggtaagaaggacacatgctccactat
gttcataacagccttatttacaatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacaaagacaaagtttggagctgagatga
aaggatggaccatgtagagaccgccatatccagggatccaccccataatc
agcatccaaaccttgacaccattgcatatactagcaagattttatcgaaa
ggatccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
atggaggagctagagaaagtacccaaggagctaaagggatctgcaaccct
atagtggaacaacagtatgactaacagttcccggagctcttgactctagc
tgcatattgtatcaaagatgctagtcggcatcactgcagagaagtcatga
cacgcaactttatatggccagtaaggatgccagcccaaaagggggagtgg
ggggttg

gaattcatacatgcaactgtcctgctttgcctttaagacacttgttcttt
gtgctcatccatagcctctagttcttatactccttccataaccgtctgca
aacatgcttgagccttaggagaaggaggtacaatatagatgtgtctttta
ggctaagagatctgcagtctcttagtctccccgtgtcttgaccacttgtg
gatcattttgttatcataatatgcttcacaataaaaattctctgttaagg
gaaaaaatcattaggagttggcttaataatatgtccattttgcaaaataa
tgacatagcttctcccctatggttcatggcctgtctagtcacaggttctt
gatcccagtatcgatcactctaaggttgttcttattgcacacagggattg
caggtaaggcagtctgatggctacctttctcctctagtatggttcatctt
caggctctatgaaaactaccaggaaaagataaagcctcgcagtgagcacc
agcacgatttctgtgttgtatgactcaagtgtgtgttgtctttaacaacg
catgggaattaccatcaagaatcgattgctttaaaattaactcccctcca
tttccaaatatatatatatacgttttaatgtatataacataggcccttcc
cttctatctctcaagtgtgattataaccttatgatcacactacaggattg
cttgcctgaatttaattcactaaatatttgtgatcctagtcttattgttt
ttcctgttgtggtgttgtgtcaatgactacattctcttggtacccgcgct
tgtatattaatacttcactgcatgttctcaggtgaagtgtgcagctctgc
aatttttttgaagagattgatctaccaattagaactctctgtagaaagaa
aatgaagttcactatatacagcatattgctcttttccccttagagtgtat
tttctgacaggaaatacactgggttcccattatactatgccattgctaga
ctgaacattacatgacttcttttctttccttttctgactaatcttgttcc
caaagttcctaatttctaggcaatttatacttcaagcttattctgaatgt
gtgattaatatccccaaaattatcctggttaatgctatgttgcttcataa
acctaaagtttatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_54822306_54823406
seq2: B6Ng01-227L01.g_135_1224

seq1  CTTATACTCCTTCCATAACCGTCTGCAAACATGCTTGAGCCTTAGGAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATACTCCTTCCATAACCGTCTGCAAACATGCTTGAGCCTTAGGAGAA  50

seq1  GGAGGTACAATATAGATGTGTCTTTTAGGCTAAGAGATCTGCAGTCTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTACAATATAGATGTGTCTTTTAGGCTAAGAGATCTGCAGTCTCTT  100

seq1  AGTCTCCCCGTGTCTTGACCACTTGTGGATCATTTTGTTATCATAATATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCCCGTGTCTTGACCACTTGTGGATCATTTTGTTATCATAATATG  150

seq1  CTTCACAATAAAAATTCTCTGTTAAGGGAAAAAATCATTAGGAGTTGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACAATAAAAATTCTCTGTTAAGGGAAAAAATCATTAGGAGTTGGCT  200

seq1  TAATAATATGTCCATTTTGCAAAATAATGACATAGCTTCTCCCCTATGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATATGTCCATTTTGCAAAATAATGACATAGCTTCTCCCCTATGGT  250

seq1  TCATGGCCTGTCTAGTCACAGGTTCTTGATCCCAGTATCGATCACTCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCCTGTCTAGTCACAGGTTCTTGATCCCAGTATCGATCACTCTAA  300

seq1  GGTTGTTCTTATTGCACACAGGGATTGCAGGTAAGGCAGTCTGATGGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTTCTTATTGCACACAGGGATTGCAGGTAAGGCAGTCTGATGGCTA  350

seq1  CCTTTCTCCTCTAGTATGGTTCATCTTCAGGCTCTATGAAAACTACCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTCCTCTAGTATGGTTCATCTTCAGGCTCTATGAAAACTACCAGG  400

seq1  AAAAGATAAAGCCTCGCAGTGAGCACCAGCACGATTTCTGTGTTGTATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATAAAGCCTCGCAGTGAGCACCAGCACGATTTCTGTGTTGTATGA  450

seq1  CTCAAGTGTGTGTTGTCTTTAACAACGCATGGGAATTACCATCAAGAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTGTGTGTTGTCTTTAACAACGCATGGGAATTACCATCAAGAATC  500

seq1  GATTGCTTTAAAATTAACTCCCCTCCATTTCCAAATATATATATATACGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCTTTAAAATTAACTCCCCTCCATTTCCAAATATATATATATACGT  550

seq1  TTTAATGTATATAACATAGGCCCTTCCCTTCTATCTCTCAAGTGTGATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGTATATAACATAGGCCCTTCCCTTCTATCTCTCAAGTGTGATTA  600

seq1  TAACCTTATGATCACACTACAGGATTGCTTGCCTGAATTTAATTCACTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTTATGATCACACTACAGGATTGCTTGCCTGAATTTAATTCACTAA  650

seq1  ATATTTGTGATCCTAGTCTTATTGTTTTTCCTGTTGTGGTGTTGTGTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGTGATCCTAGTCTTATTGTTTTTCCTGTTGTGGTGTTGTGTCAA  700

seq1  TGACTACATTCTCTTGGTACCCGCGCTTGTATATTAATACTTCACTGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTACATTCTCTTGGTACCCGCGCTTGTATATTAATACTTCACTGCAT  750

seq1  GTTCTCAGGTGAAGTGTGCAGCTCTGCAA-TTTTTTGAAGAGATTGATCT  799
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTTCTCAGGTGAAGTGTGCAGCTCTGCAATTTTTTTGAAGAGATTGATCT  800

seq1  ACCAATTAGAACTCTCTGTAGAAAGAAAATGAAGTTCACTATATACAGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATTAGAACTCTCTGTAGAAAGAAAATGAAGTTCACTATATACAGCA  850

seq1  TATTGCTCTTTTCCCC-TAGAGTGTA-TTTCTGACA-GAAATACAACTGG  896
      |||||||||||||||| ||||||||| ||||||||| ||||||||   ||
seq2  TATTGCTCTTTTCCCCTTAGAGTGTATTTTCTGACAGGAAATACACTGGG  900

seq1  TTCCCATTATACTATGCCATTGCTAGACTTAAACATTACATGACTTTCTT  946
      |||||||||||||||||||||||||||| | ||||||||||||| |||||
seq2  TTCCCATTATACTATGCCATTGCTAGAC-TGAACATTACATGAC-TTCTT  948

seq1  TTCTTTTCTTTTCTGAACTAATC-TGTTCCCCAAAAGTTCCCTAAATTTC  995
      |||||| |||||||| ||||||| |||||||  ||||||||   ||||||
seq2  TTCTTTCCTTTTCTG-ACTAATCTTGTTCCC--AAAGTTCC--TAATTTC  993

seq1  TAAGC-ATTTATACCTCAGGCTTTATTCTGATGTTGTGAATAAATATCAC  1044
      || || |||||||| ||| || |||||||||   |||| || |||||| |
seq2  TAGGCAATTTATACTTCAAGC-TTATTCTGAATGTGTG-ATTAATATCCC  1041

seq1  AATATTTATTCCTTGTGTATATTGTCCTATGGTTGTCTTTCATAAACCT-  1093
       | | ||| |||| ||   || ||  |||| ||||   ||||||||||| 
seq2  CAAAATTA-TCCTGGT---TAATG--CTAT-GTTG--CTTCATAAACCTA  1082

seq1  AAGTTTAT  1101
      ||||||||
seq2  AAGTTTAT  1090


| Home | SequenceCutter | Blast | Download |