BAC Information

Click to search

BAC

Clone NameB6Ng01-228C21
Chromosome16 (Build37)
Map Location 43,024,519 - 43,025,703
singlet/doubletsinglet
Overlap genenone
Upstream geneLsamp, Gap43, BC002163
Downstream geneLOC667484, Zbtb20, LOC100043314, Drd3, Qtrtd1, 2610015P09Rik, Zdhhc23, Gramd1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228C21.bB6Ng01-228C21.g
ACCGA041653GA041654
length1,1781,177
definitionB6Ng01-228C21.b B6Ng01-228C21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaagaaaatttagaagggtcgtttttcaaggacataattttaat
tagagaatggcttgtggctaaattttcttattatggaacatagcatattg
ttttcaaaagcccctcagcatcctgcacagaaatggtggcatttctgagg
atgatagcaaaggttgttctcttgcctacagacagatgtgttcatatgtg
cacatatgaagacacacctgcacacacatccaaatattaagttctaaaac
tcattgttaatatgattgaaggaagtctctattgatactctgcccctgtc
cttccagatgtgtgcacacattgcatcgaatgtggtatgtttagctgagg
atctgtactggatgttttcagttcttgtaatgattatgtttccttatttt
tttaaaactggaactgttagaattcatgaagtcacctacattcttctcaa
agctaatcatgaagatgttaatgtaaatgcaaatggtttcttgaatgact
cctaattttaaatgttttttttttgtttgtagataactgaatggagtgtt
tgaattgcgctttgcgactctgaaggctgaaggtaacggccagtgacggt
ttccatgggttttgtcttcgtggacatgctttattattttcaaggccatg
gatttactactgaaactttttcttgattgccctttaacaatctcttcctc
aaaataatatataattataagtaaaacaaaaaccccttgtcattttataa
tatttagttctacttgttgatgttatactttcttctacatagaaatgttt
tatgcttctcatttttattagtttgaattcttcttattgtaagccttgcc
ctttctctaagtaggcatattgactcaaaattggaaagtaagaatatatt
tgtgctcaggaatagctttacacttatgataggagagagataaaagtgct
ttctgtggaaacatccagactgttcagatgacgtttaatagcttcagata
cacagtccagaattgcagccagagttaacatagacttgtgttgctgcatt
gtgttataaagagctcatagacttgagaagagcctttcttagaacaagaa
gggggctgtattactgccttcctacatgcatgtagatcttccgagaagga
ataacctgctaagtaattattatgagga

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactactggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttactgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
atggaggagctagagaaagtacccaaggagctaaagggatcttcaaccct
ataggttgaacacattatgaactaaccagtaccctgagctctgactctag
ctgcatatgtatcaaaagatgctagtcggcatcactggaaagagaggtcc
attgaacaccgcagactttgttgccggtacaggatacgctaggtctaacg
tgcgcaagttggatgggatacatgcgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_43024519_43025703
seq2: B6Ng01-228C21.b_41_1218

seq1  GAATTCAAAGAAAATTTAGAAGGGTCGTTTTTCAAGGACATAATTTTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGAAAATTTAGAAGGGTCGTTTTTCAAGGACATAATTTTAAT  50

seq1  TAGAGAATGGCTTGTGGCTAAATTTTCTTATTATGGAACATAGCATATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAATGGCTTGTGGCTAAATTTTCTTATTATGGAACATAGCATATTG  100

seq1  TTTTCAAAAGCCCCTCAGCATCCTGCACAGAAATGGTGGCATTTCTGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAAAGCCCCTCAGCATCCTGCACAGAAATGGTGGCATTTCTGAGG  150

seq1  ATGATAGCAAAGGTTGTTCTCTTGCCTACAGACAGATGTGTTCATATGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGCAAAGGTTGTTCTCTTGCCTACAGACAGATGTGTTCATATGTG  200

seq1  CACATATGAAGACACACCTGCACACACATCCAAATATTAAGTTCTAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATGAAGACACACCTGCACACACATCCAAATATTAAGTTCTAAAAC  250

seq1  TCATTGTTAATATGATTGAAGGAAGTCTCTATTGATACTCTGCCCCTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTTAATATGATTGAAGGAAGTCTCTATTGATACTCTGCCCCTGTC  300

seq1  CTTCCAGATGTGTGCACACATTGCATCGAATGTGGTATGTTTAGCTGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGATGTGTGCACACATTGCATCGAATGTGGTATGTTTAGCTGAGG  350

seq1  ATCTGTACTGGATGTTTTCAGTTCTTGTAATGATTATGTTTCCTTATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTACTGGATGTTTTCAGTTCTTGTAATGATTATGTTTCCTTATTTT  400

seq1  TTTAAAACTGGAACTGTTAGAATTCATGAAGTCACCTACATTCTTCTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACTGGAACTGTTAGAATTCATGAAGTCACCTACATTCTTCTCAA  450

seq1  AGCTAATCATGAAGATGTTAATGTAAATGCAAATGGTTTCTTGAATGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAATCATGAAGATGTTAATGTAAATGCAAATGGTTTCTTGAATGACT  500

seq1  CCTAATTTTAAATGTTTTTTTTTTGTTTGTAGATAACTGAATGGAGTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATTTTAAATGTTTTTTTTTTGTTTGTAGATAACTGAATGGAGTGTT  550

seq1  TGAATTGCGCTTTGCGACTCTGAAGGCTGAAGGTAACGGCCAGTGACGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTGCGCTTTGCGACTCTGAAGGCTGAAGGTAACGGCCAGTGACGGT  600

seq1  TTCCATGGGTTTTGTCTTCGTGGACATGCTTTATTATTTTCAAGGCCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGGGTTTTGTCTTCGTGGACATGCTTTATTATTTTCAAGGCCATG  650

seq1  GATTTACTACTGAAACTTTTTCTTGATTGCCCTTTAACAATCTCTTCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTACTACTGAAACTTTTTCTTGATTGCCCTTTAACAATCTCTTCCTC  700

seq1  AAAATAATATATAATTATAAGTAAAACAAAAACCCCTTGTCATTTTATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATATATAATTATAAGTAAAACAAAAACCCCTTGTCATTTTATAA  750

seq1  TATTTAGTTCTACTTGTTGATGTTATACTTTCTTCTACATAGAAATGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGTTCTACTTGTTGATGTTATACTTTCTTCTACATAGAAATGTTT  800

seq1  TATGCTTCTCATTTTTATTAGTTTGAATTCTTCTTATTGTAAGCCTTGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTCTCATTTTTATTAGTTTGAATTCTTCTTATTGTAAGCCTTGCC  850

seq1  CTTTCTCTAAGTAGGCATATTGACTCAAAATTGGAAAGTAAGAATATATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTAAGTAGGCATATTGACTCAAAATTGGAAAGTAAGAATATATT  900

seq1  TGTGCTCAGGAATAGCTTTACAACTTATGATAGGAGAGAGATAAAAGTGC  950
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGTGCTCAGGAATAGCTTTAC-ACTTATGATAGGAGAGAGATAAAAGTGC  949

seq1  TTTCTGTGGAAACATCCAGACTGTTCAGATGACGTTTAATAGCTTCAGAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGGAAACATCCAGACTGTTCAGATGACGTTTAATAGCTTCAGAT  999

seq1  ACACAAGTCCAGAATTGCAGGCAAGAGGTTAACAATAGACTTGTGTTGCT  1050
      |||| |||||||||||||| || ||| |||||| ||||||||||||||||
seq2  ACAC-AGTCCAGAATTGCA-GCCAGA-GTTAAC-ATAGACTTGTGTTGCT  1045

seq1  GCATTGTG-TATAAAGAGCTCATAGGACTTGAG-AGAGCC-TTCTTAG-A  1096
      |||||||| ||||||||||||||| |||||||| |||||| ||||||| |
seq2  GCATTGTGTTATAAAGAGCTCATA-GACTTGAGAAGAGCCTTTCTTAGAA  1094

seq1  CAAG-AGGGGGCTGTAATTACTTTGCTTCTTACATGCATGGTTAGATCTT  1145
      |||| |||||||||| ||||| |  |||| ||||||||||  ||||||||
seq2  CAAGAAGGGGGCTGT-ATTAC-TGCCTTCCTACATGCATG--TAGATCTT  1140

seq1  CC-AGAGAGAATAACATGCTAGGGTAATTTATTATAGAGGA  1185
      || |||  ||||||| |||||  |||| ||||||| |||||
seq2  CCGAGAAGGAATAACCTGCTA-AGTAA-TTATTAT-GAGGA  1178


| Home | SequenceCutter | Blast | Download |