BAC Information

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BAC

Clone NameB6Ng01-228F09
Chromosome16 (Build37)
Map Location 45,692,771 - 45,826,161
singlet/doubletdoublet
Overlap geneTagln3, Abhd10, Phldb2
Upstream geneBC027231, Gtpbp8, Cd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3, EG433021, Ccdc80, Slc35a5, Atg3, EG547267, Btla, Cd200, LOC385905, Gm609, LOC628681, Slc9a10, Gcet2, BC016579, Tmprss7
Downstream geneEG667418, Plcxd2, 4930546O09Rik, Cd96, AL024110, Pvrl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228F09.bB6Ng01-228F09.g
ACCGA041773GA041774
length549737
definitionB6Ng01-228F09.b B6Ng01-228F09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,825,607 - 45,826,161)(45,692,771 - 45,693,503)
sequence
caaaatggtagcttagaggaaggatttgtggtacgttccctggagaacga
gccccaaaacatgatggagagcctaagcccgaggaaatactcatcaagtc
tgaagtttaaagccaacggggactattctggctcctatttaaccctctcc
caaccggtgtctgccaagagaagcccttctccaatgggcaccagcgtcag
gagcagtccctccttggccaaattccagggaagcaaacatttctgcgatg
gaattgataaaaatatttccatgaaacctcctatttctttcctcagttct
gcagcctctcttggcggctatcctcttgggaaagcagatttggatcatta
tactggtcgagacagtgagaggtccaccaggctctcagagaagcctccct
attccagatacagttctaggaataaatctcatgacagtgtctactttcta
ggggggctggaaggaagaaaaacctctggctcgctcctgaccatgtggaa
cggaaattccttgagctgcactggctcgtcacccatcagcaggtctggg
gaattctttaataatgcatgtgagagtttagcttcttagacaaagagatt
tatacatgtcagggtaactaaactccagtgatgaaataacttttaaacac
acatccttttaacagcagcattacaggaaaaaaaaaacaaagacaaaaca
aaacaaaacaaacaaaactaaacaaaagaaaccaaaccaaaccaaaccaa
accaaaccaaattaacaaataaaaaaacccaacaacaatggtgaagaagt
aaattgtctggccatctctgttacccttgcctcatcctctcaccctcttc
ctccttcttcccgtccaactgccacattttccagtctttaatcctgccaa
ctaatgggataatatggggccaagtacactttgcattattcatgatgccc
tcgttctctttgccaagcatccttgtcaacccttggaatgaaaagctgtc
tctatctctcatggtgaaagtgaactggacagacttcatttgatgtgggt
ttttgaaggggtgagtttgttcttttggaaagaaaatgagccactgtagg
aagagttaagtgtggcgtcaaagctactttttaagcataactcctgaagg
agtaaaagaagtgtatggaaatgccaacacatatagaatgccagggccta
agctggatcttttaggtaccagaacatattataggcagtctcggttagca
ctagtgatttaaatttttaagtggaattttatgtagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_45825607_45826161
seq2: B6Ng01-228F09.b_48_602 (reverse)

seq1  CCCAGACCTGCTGATGGGTGACGAGCCAGTGCAGCTCAAGGAATTTCCGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACCTGCTGATGGGTGACGAGCCAGTGCAGCTCAAGGAATTTCCGT  50

seq1  TCCACATGGTCAGGAGCGAGCCAGAGGTTTTTCTTCCTTCCAGCCCCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATGGTCAGGAGCGAGCCAGAGGTTTTTCTTCCTTCCAGCCCCCCT  100

seq1  AGAAAGTAGACACTGTCATGAGATTTATTCCTAGAGCTGTATCTGGAATA  150
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGAAAGTAGACACTGTCATGAGATTTATTCCTAGAACTGTATCTGGAATA  150

seq1  GGGAGGCTTCTCTGAGAGCCTGGTGGACCTCTCACTGTCTCGACCAGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCTTCTCTGAGAGCCTGGTGGACCTCTCACTGTCTCGACCAGTAT  200

seq1  AATGATCCAAATCTGCTTTCCCAAGAGGATAGCCGCCAAGAGAGGCTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATCCAAATCTGCTTTCCCAAGAGGATAGCCGCCAAGAGAGGCTGCA  250

seq1  GAACTGAGGAAAGAAATAGGAGGTTTCATGGAAATATTTTTATCAATTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAGGAAAGAAATAGGAGGTTTCATGGAAATATTTTTATCAATTCC  300

seq1  ATCGCAGAACTGTTTGCTTCCCTGGATTTTGGCCAAGGAGGGACTGCTCC  350
      ||||||||| |||||||||||||||| |||||||||||||||||||||||
seq2  ATCGCAGAAATGTTTGCTTCCCTGGAATTTGGCCAAGGAGGGACTGCTCC  350

seq1  TGACGCTGGTGCCCATTGGAGAAGGGCTTCTCTTGGCAGACACCGGTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGCTGGTGCCCATTGGAGAAGGGCTTCTCTTGGCAGACACCGGTTGG  400

seq1  GAGAGGGTTAAATAGGAGCCAGAATAGTCCCCGTTGGCTTTAAACTTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGTTAAATAGGAGCCAGAATAGTCCCCGTTGGCTTTAAACTTCAG  450

seq1  ACTTGATGAGTATTTCCTCGGGCTTAGGCTCTCCATCATGTTTTGGGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATGAGTATTTCCTCGGGCTTAGGCTCTCCATCATGTTTTGGGGCT  500

seq1  CGTTCTCCAGGGAACGTACCACAAATCCTTCCTCTAAGCTACCATTTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCTCCAGGGAACGTACCACAAATCCTTCCTCTAAGCTACCATTTTGG  550

seq1  AATTC  555
      |||||
seq2  AATTC  555

seq1: chr16_45692771_45693503
seq2: B6Ng01-228F09.g_72_808

seq1  GAATTCTTTAATAATGCATGTGAGAGTTTAGCTTCTTAGACAAAGAGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAATAATGCATGTGAGAGTTTAGCTTCTTAGACAAAGAGATT  50

seq1  TATACATGTCAGGGTAACTAAACTCCAGTGATGAAATAACTTTTAAACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATGTCAGGGTAACTAAACTCCAGTGATGAAATAACTTTTAAACAC  100

seq1  ACATCCTTTTAACAGCAGCATTACAGGAAAAAAAAAACAAAGACAAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTTTTAACAGCAGCATTACAGGAAAAAAAAAACAAAGACAAAACA  150

seq1  AAACAAAACAAACAAAACTAAACAAAAGAAACCAAACCAAACCAAACCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACAAACAAAACTAAACAAAAGAAACCAAACCAAACCAAACCAA  200

seq1  ACCAAACCAAATTAACAAATAAAAAAACCCAACAACAATGGTGAAGAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACCAAATTAACAAATAAAAAAACCCAACAACAATGGTGAAGAAGT  250

seq1  AAATTGTCTGGCCATCTCTGTTACCCTTGCCTCATCCTCTCACCCTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTCTGGCCATCTCTGTTACCCTTGCCTCATCCTCTCACCCTCTTC  300

seq1  CTCCTTCTTCCCGTCCAACTGCCACATTTTCCAGTCTTTAATCCTGCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCTTCCCGTCCAACTGCCACATTTTCCAGTCTTTAATCCTGCCAA  350

seq1  CTAATGGGATAATATGGGGCCAAGTACACTTTGCATTATTCATGATGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGGGATAATATGGGGCCAAGTACACTTTGCATTATTCATGATGCCC  400

seq1  TCGTTCTCTTTGCCAAGCATCCTTGTCAACCCTTGGAATGAAAAGCTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTCTCTTTGCCAAGCATCCTTGTCAACCCTTGGAATGAAAAGCTGTC  450

seq1  TCTATCTCTCATGGTGAAAGTGAACTGGACAGACTTCATTTGATGTGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTCTCATGGTGAAAGTGAACTGGACAGACTTCATTTGATGTGGGT  500

seq1  TTTTGAAGGGGTGAGTTTGTTCTTTTGGAAAGAAAATGAGCCACTGTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAGGGGTGAGTTTGTTCTTTTGGAAAGAAAATGAGCCACTGTAGG  550

seq1  AAGAGTTAAGTGTGGCGTCAAAGCTAC-TTTTAAGCATAACTCCTGAAGG  599
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAGAGTTAAGTGTGGCGTCAAAGCTACTTTTTAAGCATAACTCCTGAAGG  600

seq1  AGTAAAAGAAGTGTATGGAAATGCCAACACATATAGAATGCCAGGGCCTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAGAAGTGTATGGAAATGCCAACACATATAGAATGCCAGGGCCTA  650

seq1  AGCTGGATC-TTTAGGTACCAGAACATATTATAGGCAGTCTCGGTTAGCA  698
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGATCTTTTAGGTACCAGAACATATTATAGGCAGTCTCGGTTAGCA  700

seq1  CTAGTGA-TTAAATTTTAAAGTGGAA-TTTATGTAGC  733
      ||||||| ||||||||| |||||||| ||||||||||
seq2  CTAGTGATTTAAATTTTTAAGTGGAATTTTATGTAGC  737