BAC Information

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BAC

Clone NameB6Ng01-228J18
Chromosome16 (Build37)
Map Location 75,388,534 - 75,496,651
singlet/doubletdoublet
Overlap genenone
Upstream geneRobo2, LOC665042
Downstream geneD930038D03Rik, Rbm11, Stch, LOC546667, Samsn1, 4930578N18Rik, LOC100039457, Nrip1, LOC100039316
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228J18.bB6Ng01-228J18.g
ACCGA041980GA041981
length1,1651,137
definitionB6Ng01-228J18.b B6Ng01-228J18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,388,534 - 75,389,791)(75,495,523 - 75,496,651)
sequence
gaattctccaactttcaccccatcatttagtataagtacttcttgatatc
cttgcttcatggagtacaatcaaaatattattgtttctatattttcctat
agctctatccctctacattaactctccatcaatctactctatagtttctc
tctcataccttttctctagcacttaatgacagtttgatcttgacagtttg
atcttctccctcttttttttccacctctgcaatctggaatattgctttca
cttacatgatgctgaaaccattccatcaagaacttttcatgaggatttcc
atctggcgcgtagctactttcatttccatgtcctgctgtcattcctagct
aatgtaaaatcaaatgttagcatctctttataaaccattccctttcttac
tcctggctttcaaatttccttcttcccaagcactattttgcccattcctc
cccccccccgatacatatttagagagtaagtgatatctgcctgtttcttt
gcacttaatcaaggtctataacctgcctaacttactcttctttgcctttc
atttttagttcctgagctcttgattgtatgatctgatctttctttcccat
tactcattacatgtaagagtcatttaaacttcctaagtgtgatttaaact
tcctaaaagcaaaagtctatctgcatactcattgtatatacattgagcat
gtccattgtacccttgatcattaaatgttaatctgaataatatctaccac
tctaggttcattaagaatggttaaaaaaaaaaaccctatacctggcatca
gaaagggccatgtattacacgacaacataagaacaccatgtacattactg
atttttacaggttacatattagcacttaaacccctttgctttcaaagttt
gatggaaaatgatatattaatacttccataagttctaagtaaagaagttg
tcgtgaactcgcttctttgattatattcccttatgaccatgattgacagg
gcatactcctctcatcaattccacactagtgaattaaggtacccacttag
gcctttacattggtgccctatttctgtcactcctattataggcaacatgc
aatgcagcacgaaactggtggttattaacattaggttatttagaagttca
ggtttgtatggcatg

gaattcaactcctcactcaattgtagaaaatatctacagctgacaaaacc
acgcccctgctagagcatgaagcaaatcatagtctgctgctacagacaat
tggaggcaatcccacgccactacacctgggattaaggtaaaactacattc
ttatatttccgtgtgtttttaaaaaaaccaaaattacagaattctcacta
caaggggctttttccttaaagaacgttaactctccctcacctggcagcta
tcaattccaaatcactccttattgttaggttattagagtattcaatacac
tcattggaaccttctattttttctttaattttaatcttagaaaattcatg
tctcagttgacaacaatgtcacaagattaataataattatgcctttgcac
attttcatcaatagattgataattaaacaatgaatacattttaattatca
taaaacaaatcatgaaatgcctaatgtatatttttgtgccccttaaaaat
tctctcccctaacaggctgcatgaatccctgagtaattgtatataatttt
aatgatgactctaattagctcaaaacattttggtggtgaacacttatgaa
gtacattgtaaatgaaaataaacttcagcagtaatggcttttaaaaaaaa
tattttcctaattagaattgctgatttttctaagaattgaaggtccccgt
ttgtctttccctttcaattttggttcacagaaacatcttatcataaagag
tcaaaggctattttgatcatttaatgaggtcactttcacacttctaaata
attgcacgcgacacagatgattctttttaataagatttgaggtgcaaatt
acatacctctgtttaagtcattagagtaaaatatggacactatcaattca
cactcctcaaaaaacaactaactccacttttggccctatattaagcttat
tgtttcaggtcttcatgtggaaattgagtgttagtaagttgcagatttat
tttcacttttaaatccttctgttttaagttaatatagccactactacatt
ttgttgaaatgaaccattgtctccacattagggaaagtgtacctcatggg
agaaaacattataacctcaatcattattccaataaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_75388534_75389791
seq2: B6Ng01-228J18.b_46_1210

seq1  GAATTCTCCAACTTTCACCCCATCATTTAGTATAAGTACTTCTTGATATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAACTTTCACCCCATCATTTAGTATAAGTACTTCTTGATATC  50

seq1  CTTGCTTCATGGAGTACAATCAAAATATTATTGTTTCTATATTTTCCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTCATGGAGTACAATCAAAATATTATTGTTTCTATATTTTCCTAT  100

seq1  AGCTCTATCCCTCTACATTAACTCTCCATCAATCTACTCTATAGTTTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTATCCCTCTACATTAACTCTCCATCAATCTACTCTATAGTTTCTC  150

seq1  TCTCATACCTTTTCTCTAGCACTTAATGACAGTTTGATCTTGACAGTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATACCTTTTCTCTAGCACTTAATGACAGTTTGATCTTGACAGTTTG  200

seq1  ATCTTCTCCCTCTTTTTTTTCCACCTCTGCAATCTGGAATATTGCTTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTCCCTCTTTTTTTTCCACCTCTGCAATCTGGAATATTGCTTTCA  250

seq1  CTTACATGATGCTGAAACCATTCCATCAAGAACTTTTCATGAGGATTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATGATGCTGAAACCATTCCATCAAGAACTTTTCATGAGGATTTCC  300

seq1  ATCTGGCGCGTAGCTACTTTCATTTCCATGTCCTGCTGTCATTCCTAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGCGCGTAGCTACTTTCATTTCCATGTCCTGCTGTCATTCCTAGCT  350

seq1  AATGTAAAATCAAATGTTAGCATCTCTTTATAAACCATTCCCTTTCTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAAATCAAATGTTAGCATCTCTTTATAAACCATTCCCTTTCTTAC  400

seq1  TCCTGGCTTTCAAATTTCCTTCTTCCCAAGCACTATTTTGCCCATTCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCTTTCAAATTTCCTTCTTCCCAAGCACTATTTTGCCCATTCCTC  450

seq1  CCCCCCCCCGATACATATTTAGAGAGTAAGTGATATCTGCCTGTTTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCGATACATATTTAGAGAGTAAGTGATATCTGCCTGTTTCTTT  500

seq1  GCACTTAATCAAGGTCTATAACCTGCCTAACTTACTCTTCTTTGCCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTAATCAAGGTCTATAACCTGCCTAACTTACTCTTCTTTGCCTTTC  550

seq1  ATTTTTAGTTCCTGAGCTCTTGATTGTATGATCTGATCTTTCTTTCCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAGTTCCTGAGCTCTTGATTGTATGATCTGATCTTTCTTTCCCAT  600

seq1  TACTCATTACATGTAAGAGTCATTTAAACTTCCTAAGTGTGATTTAAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATTACATGTAAGAGTCATTTAAACTTCCTAAGTGTGATTTAAACT  650

seq1  TCCTAAAAGCAAAAGTCTATCTGCATACTCATTGTATATACATTGAGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAAAGCAAAAGTCTATCTGCATACTCATTGTATATACATTGAGCAT  700

seq1  GTCCATTGTACCCTTGATCATTAAATGTTAATCTGAATAATATCTACCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATTGTACCCTTGATCATTAAATGTTAATCTGAATAATATCTACCAC  750

seq1  TCTAGGTTCATTAAGAATGGTT-AAAAAAAAAACCCTATACCTGGCATCA  799
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCTAGGTTCATTAAGAATGGTTAAAAAAAAAAACCCTATACCTGGCATCA  800

seq1  GAAAGGGCCATGTATTACACGACAACATAAGAACACCATGTACATTACTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGCCATGTATTACACGACAACATAAGAACACCATGTACATTACTG  850

seq1  ATTTTTACAGGTTACATATTAGCACTTAAACCCCTTTGCTTTCAAAG-TT  898
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATTTTTACAGGTTACATATTAGCACTTAAACCCCTTTGCTTTCAAAGTTT  900

seq1  GATGGAAAATGATATATT-ATACTTCCATAAGTTCTAAGTAAAGAAG-TG  946
      |||||||||||||||||| |||||||||||||||||||||||||||| ||
seq2  GATGGAAAATGATATATTAATACTTCCATAAGTTCTAAGTAAAGAAGTTG  950

seq1  TCGTGAACTCGCTTCTTTGA-TATATT-CCTTATGACCATGATTGACAGG  994
      |||||||||||||||||||| |||||| ||||||||||||||||||||||
seq2  TCGTGAACTCGCTTCTTTGATTATATTCCCTTATGACCATGATTGACAGG  1000

seq1  GCATACTTCCTCTTCATC-ATTCCACACTAGTGAATT-AGGTACCCACTT  1042
      |||||| ||||| ||||| |||||||||||||||||| ||||||||||||
seq2  GCATAC-TCCTC-TCATCAATTCCACACTAGTGAATTAAGGTACCCACTT  1048

seq1  AGGCCTTTTACAT--GTGCCCTATTTCTGTCACTCCTA-TATAGGGCAAC  1089
      ||||| |||||||  ||||||||||||||||||||||| |||| ||||||
seq2  AGGCC-TTTACATTGGTGCCCTATTTCTGTCACTCCTATTATA-GGCAAC  1096

seq1  ATGCAATGCAGCACGAACCT-GTGGTTATAAACAT--AGTTATTTAGAAG  1136
      ||||||||||||||||| || |||||||| |||||   ||||||||||||
seq2  ATGCAATGCAGCACGAAACTGGTGGTTATTAACATTAGGTTATTTAGAAG  1146

seq1  -TCA-GTTTG-ATAGCATGACAATTAGAAAACAACATCAATAGCCTTGTG  1183
       ||| ||||| || |||||                               
seq2  TTCAGGTTTGTATGGCATG-------------------------------  1165

seq1  CTAGCCTGAGAATTCTCTAGCCATGGGCTTTTACTCTTTACAGCACCATT  1233
                                                        
seq2  --------------------------------------------------  1165

seq1  TATGATCTTACTACTGTATGGCATG  1258
                               
seq2  -------------------------  1165


seq1: chr16_75495523_75496651
seq2: B6Ng01-228J18.g_69_1205 (reverse)

seq1  ATTTATT-GAAT-ATGATTGAAGTTATAATGTTCT---CCATGAGGTACA  45
      ||||||| |||| |||||||| ||||||||||| |   ||||||||||||
seq2  ATTTATTGGAATAATGATTGAGGTTATAATGTTTTCTCCCATGAGGTACA  50

seq1  CTTTCCCT-ATGT-GAGACATGGTTTCATTTCCAAACAAAATGTAGTAGT  93
      |||||||| |||| ||||||  | ||||||||  ||||||||||||||||
seq2  CTTTCCCTAATGTGGAGACAATGGTTCATTTC--AACAAAATGTAGTAGT  98

seq1  -GCTATATTAAACTTAAAACAGAAGGATTTAAAAGTGAAAATAAATCTGC  142
       |||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATATT-AACTTAAAACAGAAGGATTTAAAAGTGAAAATAAATCTGC  147

seq1  AACTTACTAACACCTCATTTTCCACATG-AGACCTGAAACATTAAGCCTT  191
      |||||||||||| |||| |||||||||| |||||||||||| |||| |||
seq2  AACTTACTAACA-CTCAATTTCCACATGAAGACCTGAAACAATAAG-CTT  195

seq1  ATTATAGGGCC-AAAGTGGAGTTAGTTG-TTTTTGAGGAGTGTGAATTGA  239
      | ||||||||| |||||||||||||||| |||||||||||||||||||||
seq2  AATATAGGGCCAAAAGTGGAGTTAGTTGTTTTTTGAGGAGTGTGAATTGA  245

seq1  TAGTGTCCATATTTTACTCTAATGACTTAAACAGAGGTATGTAATTTGCA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTCCATATTTTACTCTAATGACTTAAACAGAGGTATGTAATTTGCA  295

seq1  CCTCAAATCTTATTAAAAAGAATCATCTGTGTCGCGTGCAATTATTTAGA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAATCTTATTAAAAAGAATCATCTGTGTCGCGTGCAATTATTTAGA  345

seq1  AGTGTGAAAGTGACCTCATT-AATGATC-AAATAGCCTTTGACTCTTTAT  387
      |||||||||||||||||||| ||||||| |||||||||||||||||||||
seq2  AGTGTGAAAGTGACCTCATTAAATGATCAAAATAGCCTTTGACTCTTTAT  395

seq1  GATAAGATGTTTCTGTGAACCAAAATTGAAAGGGAAAGACAAACGGGGAC  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGATGTTTCTGTGAACCAAAATTGAAAGGGAAAGACAAACGGGGAC  445

seq1  CTTCAATTCTTAGAAAAATCAGCAATTCTAATTAGGAAAATATTTTTTTT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATTCTTAGAAAAATCAGCAATTCTAATTAGGAAAATATTTTTTTT  495

seq1  AAAAGCCATTACTGCTGAAGTTTATTTTCATTTACAATGTACTTCATAAG  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCATTACTGCTGAAGTTTATTTTCATTTACAATGTACTTCATAAG  545

seq1  TGTTCACCACCAAAATGTTTTGAGCTAATTAGAGTCATCATTAAAATTAT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACCACCAAAATGTTTTGAGCTAATTAGAGTCATCATTAAAATTAT  595

seq1  ATACAATTACTCAGGGATTCATGCAGCCTGTTAGGGGAGAGAATTTTTAA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATTACTCAGGGATTCATGCAGCCTGTTAGGGGAGAGAATTTTTAA  645

seq1  GGGGCACAAAAATATACATTAGGCATTTCATGATTTGTTTTATGATAATT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCACAAAAATATACATTAGGCATTTCATGATTTGTTTTATGATAATT  695

seq1  AAAATGTATTCATTGTTTAATTATCAATCTATTGATGAAAATGTGCAAAG  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTATTCATTGTTTAATTATCAATCTATTGATGAAAATGTGCAAAG  745

seq1  GCATAATTATTATTAATCTTGTGACATTGTTGTCAACTGAGACATGAATT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAATTATTATTAATCTTGTGACATTGTTGTCAACTGAGACATGAATT  795

seq1  TTCTAAGATTAAAATTAAAGAAAAAATAGAAGGTTCCAATGAGTGTATTG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGATTAAAATTAAAGAAAAAATAGAAGGTTCCAATGAGTGTATTG  845

seq1  AATACTCTAATAACCTAACAATAAGGAGTGATTTGGAATTGATAGCTGCC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTCTAATAACCTAACAATAAGGAGTGATTTGGAATTGATAGCTGCC  895

seq1  AGGTGAGGGAGAGTTAACGTTCTTTAAGGAAAAAGCCCCTTGTAGTGAGA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGGGAGAGTTAACGTTCTTTAAGGAAAAAGCCCCTTGTAGTGAGA  945

seq1  ATTCTGTAATTTTGGTTTTTTTAAAAACACACGGAAATATAAGAATGTAG  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTAATTTTGGTTTTTTTAAAAACACACGGAAATATAAGAATGTAG  995

seq1  TTTTACCTTAATCCCAGGTGTAGTGGCGTGGGATTGCCTCCAATTGTCTG  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCTTAATCCCAGGTGTAGTGGCGTGGGATTGCCTCCAATTGTCTG  1045

seq1  TAGCAGCAGACTATGATTTGCTTCATGCTCTAGCAGGGGCGTGGTTTTGT  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGCAGACTATGATTTGCTTCATGCTCTAGCAGGGGCGTGGTTTTGT  1095

seq1  CAGCTGTAGATATTTTCTACAATTGAGTGAGGAGTTGAATTC  1129
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTAGATATTTTCTACAATTGAGTGAGGAGTTGAATTC  1137


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