BAC Information

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BAC

Clone NameB6Ng01-229M09
Chromosome16 (Build37)
Map Location 58,447,316 - 58,616,118
singlet/doubletdoublet
Overlap geneDcbld2, St3gal6, LOC100043480, Gm813
Upstream gene2610528E23Rik, 4631422O05Rik, Col8a1, LOC435480, LOC629342, LOC100043477
Downstream geneE330017A01Rik, Cpox, LOC100043790, Gpr15, Cldnd1, Olfr172, Olfr173, Olfr174, Olfr178, Olfr180, Olfr1563-ps1, Olfr181, Olfr182-ps1, Olfr183, Olfr185-ps1, Olfr186, Olfr187, Olfr188-ps1, Olfr189-ps1, Olfr190, Olfr191, Olfr192, Olfr193, Olfr1540-ps1, Olfr194, Olfr195, Olfr196, Olfr197, Olfr198, Olfr199, Olfr200-ps1, Olfr201, Olfr202, Olfr203, Olfr204, Olfr205, GA_x5J8B7U0478-6-340, Olfr206, Olfr207, Gabrr3, LOC100043803, Mina, BC043118, LOC672884, Arl6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229M09.bB6Ng01-229M09.g
ACCGA042814GA042815
length1,1581,174
definitionB6Ng01-229M09.b B6Ng01-229M09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,614,933 - 58,616,118)(58,447,316 - 58,448,473)
sequence
gaattcaaaggacaagcaagacactcggaacatccaagacctcttctaga
tgaccactgagacaagaaactcttttcatgagattcctacctgaaatttt
aacttctgttacccttctcccttcccccaaatcctcacctccgtcctagg
cttgcttgtacagcgatgacacgacaatgactagttttggagcatattcg
caggacaaggcttcagtgaaatggttttatgccaaaagaatcctggcata
catcaccgaaagaggtaataaggtctgcattccggaaattcaggtgactg
taattctactttaacaatttctgctggggcttttttctaaatctaaaata
taggtgcttgctatttaaatgtcctagttaggttattcatgttcttagta
actggacgtgagtcaatagcttcagggatgaaacatgtccattaaatacc
tgtctggcttttctcaatcagccaaccacacaaatctctgcatctgcagc
accagcatcataggtgaatggtgaaatattcaagttcatgactctcgcct
tgcccaagaaacctgattgtgagtagggccaagaagctgtgccttaacaa
actcctcagatgggcctaatgctctgaagagcttagaagcagggctctcg
tgagtcttcccagagctattaccctcctttttcagttcacagaaacttta
ggtagaccctcagtattcattatgtttgtcttgtcagtgtcttgaactac
actgttctcactaagtgctggcactccaaagaaactgtctgatcttcagt
taagacttgtatcctagctcaacgcacacctttaagtcccagcacttaga
aggcagacacaggaagatttctctgagtctgaggctagcctagtctataa
agcaagctcctggatagccagggctacccaagactgtgcatccattcgtc
tgtatgatttagtgcatttaaaataaatttagtacatatctaatacatac
aaaatgaaacacatatagaatttcaacagttgataatactactgtacctt
gttaatgtagcatggattgtcaagggtcttttagttctgaggcccattca
gttaaacaaaatgactgcaggtgaacagatctggtctttaaactctctag
ctgatcca
gaattctaggttcagggtaagaacctttctccaaaaaataaggtgaagaa
atactgaagaatgtacctggcattgattccatcctctacacacaaatgaa
catgtattcatgcacacacagacatgtgtgcacatagaagattgttattt
ctgtgggaaacatgctaccttcattgttgttacagtgtattctgggcaac
atggcggaagggtcagctgggctccctctggttcccagcactgtcatcac
cacccacatctgagctctcgtcaccctctcgtgagcttccctctcatttt
ctctttctttcctagaagccagaataagctctctaaaaagctcctcacct
ggttaagcctataagctgctctgatccttcactggcttcctctgtttacc
tagaagtgtatcccctacatctgtagtagaagacccacatggcttctgcg
gggtctggatcctgcccctctaaccttcctgtattcgctgtactttttca
ggagcacgccagaccctctgtctggggccatgctctttctagcttccagt
gtgcatatcccatcacggacttacctcagtgagacccactagctcaaata
agctgtgtcaagctgtatgtaagaggagcccaactttgtgactcctgtgc
acagttcttttactttccttgtttataagatgggagtaataataataaaa
gtacctcctatgtgggattctgaaacacttggggttctgccccatacata
gcatgtttgataaatgtatgtgttttgttaaatagtaattctcacagtta
tttcaaaatccatcttctccaccccaaatatctgtatgaggtactggcta
agtgttttcttctgcacttgaatatggactttaggtgacagggctgtatt
tatttaattagcattcaagaagtccacaggcctcatcagataacatggca
gacattcatattaaacctgtgagccatggtaactaggtctgacagtagaa
aggacgtctactactcatggtgagtaaaataagggaattgtagatttttt
tgaaaatattttctgctcgttctgtcaaatatggtgtgggtgagcaggcc
tataggggccaatttaaccaagaccatggccgcaattcatgtctgaggct
gtggctctgtgtattgcctgaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_58614933_58616118
seq2: B6Ng01-229M09.b_45_1202 (reverse)

seq1  TGGAGTCAGCT-GAGAGTTTTAAAGA-CAGATACCTGGTTCACCTGCAGT  48
      |||| |||||| ||||| |||||||| |||||  || |||||||||||||
seq2  TGGA-TCAGCTAGAGAG-TTTAAAGACCAGAT--CT-GTTCACCTGCAGT  45

seq1  CATTTTGTTTAACTGATATGGGCCTCAGGACCTTAAAAAGACCCTTGACA  98
      |||||||||||||||| ||||||||||| ||    |||||||||||||||
seq2  CATTTTGTTTAACTGA-ATGGGCCTCAGAAC---TAAAAGACCCTTGACA  91

seq1  AATTCCATTGCTACA-TAACAAGGGTACAGGTTAGTAATTATTCCACTGG  147
      |  |||| ||||||| |||||| |||||||  |||| |||| || |||| 
seq2  A--TCCA-TGCTACATTAACAA-GGTACAG--TAGT-ATTA-TCAACTG-  132

seq1  TTTTGAAATTCTATAATGTTGGTTTCATTTTGTTATGTATTAGATATGTA  197
        |||||||||||| ||||  ||||||||||| |||||||||||||||||
seq2  --TTGAAATTCTAT-ATGT--GTTTCATTTTG-TATGTATTAGATATGTA  176

seq1  CTAAATTTATTTTTAAAATGCACCTAAATCATTACAGACGAATGGATGCA  247
      |||||||||||||  ||||||| |||||||| ||||||||||||||||| 
seq2  CTAAATTTATTTT--AAATGCA-CTAAATCA-TACAGACGAATGGATGC-  221

seq1  ACAGTCTTTGGGTAGCCCTGGCTATCCAGGAGCTTGCTTTATAGACTAGG  297
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTC-TTGGGTAGCCCTGGCTATCCAGGAGCTTGCTTTATAGACTAGG  270

seq1  CTAGCCTCAGACTCAGAGAAATCTTCCTGTGTCTGCCTTCTAAGTGCTGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTCAGACTCAGAGAAATCTTCCTGTGTCTGCCTTCTAAGTGCTGG  320

seq1  GACTTAAAGGTGTGCGTTGAGCTAGGATACAAGTCTTAACTGAAGATCAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAAAGGTGTGCGTTGAGCTAGGATACAAGTCTTAACTGAAGATCAG  370

seq1  ACAGTTTCTTTGGAGTGCCAGCACTTAGTGAGAACAGTGTAGTTCAAGAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTCTTTGGAGTGCCAGCACTTAGTGAGAACAGTGTAGTTCAAGAC  420

seq1  ACTGACAAGACAAACATAATGAATACCTGAGGGTCTACCTAAAGTTTCTG  497
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACTGACAAGACAAACATAATGAATA-CTGAGGGTCTACCTAAAGTTTCTG  469

seq1  TGAACTGAAAAAGGAGGGTAATAGCTCTGGGAAGACTCACGAGAGCCCTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTGAAAAAGGAGGGTAATAGCTCTGGGAAGACTCACGAGAGCCCTG  519

seq1  CTTCTAAGCTCTTCAGAGCATTAGGCCCATCTGAGGAGTTTGTTAAGGCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAAGCTCTTCAGAGCATTAGGCCCATCTGAGGAGTTTGTTAAGGCA  569

seq1  CAGCTTCTTGGCCCTACTCACAATCAGGTTTCTTGGGCAAGGCGAGAGTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCTTGGCCCTACTCACAATCAGGTTTCTTGGGCAAGGCGAGAGTC  619

seq1  ATGAACTTGAATATTTCACCATTCACCTATGATGCTGGTGCTGCAGATGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTTGAATATTTCACCATTCACCTATGATGCTGGTGCTGCAGATGC  669

seq1  AGAGATTTGTGTGGTTGGCTGATTGAGAAAAGCCAGACAGGTATTTAATG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTTGTGTGGTTGGCTGATTGAGAAAAGCCAGACAGGTATTTAATG  719

seq1  GACATGTTTCATCCCTGAAGCTATTGACTCACGTCCAGTTACTAAGAACA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGTTTCATCCCTGAAGCTATTGACTCACGTCCAGTTACTAAGAACA  769

seq1  TGAATAACCTAACTAGGACATTTAAATAGCAAGCACCTATATTTTAGATT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAACCTAACTAGGACATTTAAATAGCAAGCACCTATATTTTAGATT  819

seq1  TAGAAAAAAGCCCCAGCAGAAATTGTTAAAGTAGAATTACAGTCACCTGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAAAGCCCCAGCAGAAATTGTTAAAGTAGAATTACAGTCACCTGA  869

seq1  ATTTCCGGAATGCAGACCTTATTACCTCTTTCGGTGATGTATGCCAGGAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCGGAATGCAGACCTTATTACCTCTTTCGGTGATGTATGCCAGGAT  919

seq1  TCTTTTGGCATAAAACCATTTCACTGAAGCCTTGTCCTGCGAATATGCTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGGCATAAAACCATTTCACTGAAGCCTTGTCCTGCGAATATGCTC  969

seq1  CAAAACTAGTCATTGTCGTGTCATCGCTGTACAAGCAAGCCTAGGACGGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTAGTCATTGTCGTGTCATCGCTGTACAAGCAAGCCTAGGACGGA  1019

seq1  GGTGAGGATTTGGGGGAAGGGAGAAGGGTAACAGAAGTTAAAATTTCAGG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGGATTTGGGGGAAGGGAGAAGGGTAACAGAAGTTAAAATTTCAGG  1069

seq1  TAGGAATCTCATGAAAAGAGTTTCTTGTCTCAGTGGTCATCTAGAAGAGG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATCTCATGAAAAGAGTTTCTTGTCTCAGTGGTCATCTAGAAGAGG  1119

seq1  TCTTGGATGTTCCGAGTGTCTTGCTTGTCCTTTGAATTC  1186
      |||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGATGTTCCGAGTGTCTTGCTTGTCCTTTGAATTC  1158

seq1: chr16_58447316_58448473
seq2: B6Ng01-229M09.g_68_1241

seq1  GAATTCTAGGTTCAGGGTAAGAACCTTTCTCCAAAAAATAAGGTGAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGTTCAGGGTAAGAACCTTTCTCCAAAAAATAAGGTGAAGAA  50

seq1  ATACTGAAGAATGTACCTGGCATTGATTCCATCCTCTACACACAAATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGAAGAATGTACCTGGCATTGATTCCATCCTCTACACACAAATGAA  100

seq1  CATGTATTCATGCACACACAGACATGTGTGCACATAGAAGATTGTTATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATTCATGCACACACAGACATGTGTGCACATAGAAGATTGTTATTT  150

seq1  CTGTGGGAAACATGCTACCTTCATTGTTGTTACAGTGTATTCTGGGCAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGAAACATGCTACCTTCATTGTTGTTACAGTGTATTCTGGGCAAC  200

seq1  ATGGCGGAAGGGTCAGCTGGGCTCCCTCTGGTTCCCAGCACTGTCATCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCGGAAGGGTCAGCTGGGCTCCCTCTGGTTCCCAGCACTGTCATCAC  250

seq1  CACCCACATCTGAGCTCTCGTCACCCTCTCGTGAGCTTCCCTCTCATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACATCTGAGCTCTCGTCACCCTCTCGTGAGCTTCCCTCTCATTTT  300

seq1  CTCTTTCTTTCCTAGAAGCCAGAATAAGCTCTCTAAAAAGCTCCTCACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTTTCCTAGAAGCCAGAATAAGCTCTCTAAAAAGCTCCTCACCT  350

seq1  GGTTAAGCCTATAAGCTGCTCTGATCCTTCACTGGCTTCCTCTGTTTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAGCCTATAAGCTGCTCTGATCCTTCACTGGCTTCCTCTGTTTACC  400

seq1  TAGAAGTGTATCCCCTACATCTGTAGTAGAAGACCCACATGGCTTCTGCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTGTATCCCCTACATCTGTAGTAGAAGACCCACATGGCTTCTGCG  450

seq1  GGGTCTGGATCCTGCCCCTCTAACCTTCCTGTATTCGCTGTACTTTTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTGGATCCTGCCCCTCTAACCTTCCTGTATTCGCTGTACTTTTTCA  500

seq1  GGAGCACGCCAGACCCTCTGTCTGGGGCCATGCTCTTTCTAGCTTCCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCACGCCAGACCCTCTGTCTGGGGCCATGCTCTTTCTAGCTTCCAGT  550

seq1  GTGCATATCCCATCACGGACTTACCTCAGTGAGACCCACTAGCTCAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATATCCCATCACGGACTTACCTCAGTGAGACCCACTAGCTCAAATA  600

seq1  AGCTGTGTCAAGCTGTATGTAAGAGGAGCCCAACTTTGTGACTCCTGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGTCAAGCTGTATGTAAGAGGAGCCCAACTTTGTGACTCCTGTGC  650

seq1  ACAGTTCTTTTACTTTCCTTGTTTATAAGATGGGAGTAATAATAATAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCTTTTACTTTCCTTGTTTATAAGATGGGAGTAATAATAATAAAA  700

seq1  GTACCTCCTATGTGGGATTCTGAAACACTTGGGGTTCTGCCCCATACATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTCCTATGTGGGATTCTGAAACACTTGGGGTTCTGCCCCATACATA  750

seq1  GCATGTTTGATAAATGTATGTGTTTTGTTAAATAGTAATTCTCACAGTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTTTGATAAATGTATGTGTTTTGTTAAATAGTAATTCTCACAGTTA  800

seq1  TTTCAAAATCCATCTTCTCCACCCCAAATATCTGTATGA-GTACTGGCTA  849
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTTCAAAATCCATCTTCTCCACCCCAAATATCTGTATGAGGTACTGGCTA  850

seq1  AGTGTTTTCTTCTGCAACTTGAATATGGAC-TTAGGTGACAGGGCTGTAT  898
      ||||||||||||||| |||||||||||||| |||||||||||||||||||
seq2  AGTGTTTTCTTCTGC-ACTTGAATATGGACTTTAGGTGACAGGGCTGTAT  899

seq1  TTATTTAATTAGCATTC-AGAAGT-CACAGGCCTCATCAGATAACATGGC  946
      ||||||||||||||||| |||||| |||||||||||||||||||||||||
seq2  TTATTTAATTAGCATTCAAGAAGTCCACAGGCCTCATCAGATAACATGGC  949

seq1  AGACATTCATA-TAAACCTGTGAGCCATGGTAACTAGGTCTGACAGTAGA  995
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGACATTCATATTAAACCTGTGAGCCATGGTAACTAGGTCTGACAGTAGA  999

seq1  AA-GACGTCTACTACTCATGGTGAAGTAAAATAA-GGAATTGTAGA-TTT  1042
      || |||||||||||||||||||| |||||||||| ||||||||||| |||
seq2  AAGGACGTCTACTACTCATGGTG-AGTAAAATAAGGGAATTGTAGATTTT  1048

seq1  TTTGAAAATATTTTCTG-TCTGTCTGTTCAATAT-GTGTGGGTGGAAGAA  1090
      ||||||||||||||||| ||  |||||  ||||| |||||||| ||  | 
seq2  TTTGAAAATATTTTCTGCTCGTTCTGTCAAATATGGTGTGGGT-GAGCAG  1097

seq1  GTCTATATGGG-CTATTTAA-CAAGA-CATGGCCGCATTTCATG-CTGAG  1136
      | ||||| ||| | |||||| ||||| |||||||||| |||||| |||||
seq2  GCCTATAGGGGCCAATTTAACCAAGACCATGGCCGCAATTCATGTCTGAG  1147

seq1  GCTGTG---CTGTGTAT--GCTGAATG  1158
      ||||||   ||||||||   |||||||
seq2  GCTGTGGCTCTGTGTATTGCCTGAATG  1174