BAC Information

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BAC

Clone NameB6Ng01-229O20
Chromosome16 (Build37)
Map Location 85,094,342 - 85,095,444
singlet/doubletsinglet
Overlap geneApp
Upstream geneEG621729, LOC640489, LOC665664, LOC547311, LOC100039893, LOC100039634, Mrpl39, Jam2, Atp5j, LOC100039950, Gabpa, Gm311
Downstream geneCyyr1, LOC100039994, LOC622000, Adamts1, Adamts5, LOC100040025
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229O20.bB6Ng01-229O20.g
ACCGA042925GA042926
length1,1011,172
definitionB6Ng01-229O20.b B6Ng01-229O20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
aagcaagtatatgtagaggtcaaaggacaactctcaaaggtcatttctct
ccaagatgtgggccctgaactcagctttcccatcctatgcacaaacatct
ctatccactgagccatatccttggtccctagctttaggacagtcctaaat
tctcctcataaaataacatcattctaaactagagaccacatctatatttt
taaccaatactttgcaaccaatcttatatttataccgaagtattccaaaa
tgctttttagaagtcaaaatttaagaatgtgttaattacacagtaccact
ttaaaatatattaaaaatcaggccatgaatgcttgccaggtattggcagc
aggactcctagttcacatggacttaattagttcttaagcaaggaaccaag
agtcctggagactttgataaaagaaaggaacaggcgtagggggtgtacat
gcacaaacaccctcccttcttgctttctccagcccttctcaatctctcat
aactaccccttctctctctctctcgtgagtatgtaccacacacatgcaca
cacacatatacattcatgcatgtgcacagatatacctatctgcatagttt
tcagaaggctgagaataactatactcctctcttatgacaaattgtaatca
ttgcaaatggtatttagcaataaattaagtgataaaaatagcatactgtt
taagcacggtttaatctaaaaatctcaaatttatcatctattagtagtgt
ttcatttggcagtgctggagctcgaacccaggacctcactcacggcaggc
aaatgctcgaccactgcccagcatttcttcataaggaactggcatctacc
ggtatctcctgaaatgtccaagaagctatgtgccagtactccagaggtca
caccaaatctgagactcttcctagagaagaaaccttgccttgggcatgat
aactcagacggctattagggaaaccacagcatggatggaatttctggcaa
gcatgtgagttatacaaaatgaacgaccagggagaaagctgtagaaaaaa
caccagtagttaggatttctgaagttctacaaaagagcctgttgatggaa
a
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccgtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactctag
aagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagaaagattttatcgaaa
ggaccagatgtagctgtctcttgtgagactatgccggggcctagcaaaca
cagaagtggatgctcacagtcagctaatggatggatcatagggctcccaa
tggaggagctagagaaagtagccaaggagctaaagggatctgcaacctat
agtgaacaacattatgaactaccagtacccgagctctgactctagctgca
tatgtatcaaagattgctagttcgcaatcactggaaagagaaggccattg
gacatgcaactttaatgcctagttacaggtaacctcatgcataaatggga
attgggtgtgtggccaagacga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_85094342_85095444
seq2: B6Ng01-229O20.b_56_1156

seq1  AAGCAAGTATATGTAGAGGTCAAAGGACAACTCTCAAAGGTCATTTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGTATATGTAGAGGTCAAAGGACAACTCTCAAAGGTCATTTCTCT  50

seq1  CCAAGATGTGGGCCCTGAACTCAGCTTTCCCATCCTATGCACAAACATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATGTGGGCCCTGAACTCAGCTTTCCCATCCTATGCACAAACATCT  100

seq1  CTATCCACTGAGCCATATCCTTGGTCCCTAGCTTTAGGACAGTCCTAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCACTGAGCCATATCCTTGGTCCCTAGCTTTAGGACAGTCCTAAAT  150

seq1  TCTCCTCATAAAATAACATCATTCTAAACTAGAGACCACATCTATATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCATAAAATAACATCATTCTAAACTAGAGACCACATCTATATTTT  200

seq1  TAACCAATACTTTGCAACCAATCTTATATTTATACCGAAGTATTCCAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAATACTTTGCAACCAATCTTATATTTATACCGAAGTATTCCAAAA  250

seq1  TGCTTTTTAGAAGTCAAAATTTAAGAATGTGTTAATTACACAGTACCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTTAGAAGTCAAAATTTAAGAATGTGTTAATTACACAGTACCACT  300

seq1  TTAAAATATATTAAAAATCAGGCCATGAATGCTTGCCAGGTATTGGCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATATATTAAAAATCAGGCCATGAATGCTTGCCAGGTATTGGCAGC  350

seq1  AGGACTCCTAGTTCACATGGACTTAATTAGTTCTTAAGCAAGGAACCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCCTAGTTCACATGGACTTAATTAGTTCTTAAGCAAGGAACCAAG  400

seq1  AGTCCTGGAGACTTTGATAAAAGAAAGGAACAGGCGTAGGGGGTGTACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGGAGACTTTGATAAAAGAAAGGAACAGGCGTAGGGGGTGTACAT  450

seq1  GCACAAACACCCTCCCTTCTTGCTTTCTCCAGCCCTTCTCAATCTCTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAACACCCTCCCTTCTTGCTTTCTCCAGCCCTTCTCAATCTCTCAT  500

seq1  AACTACCCCTTCTCTCTCTCTCTCGTGAGTATGTACCACACACATGCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACCCCTTCTCTCTCTCTCTCGTGAGTATGTACCACACACATGCACA  550

seq1  CACACATATACATTCATGCATGTGCACAGATATACCTATCTGCATAGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATATACATTCATGCATGTGCACAGATATACCTATCTGCATAGTTT  600

seq1  TCAGAAGGCTGAGAATAACTATACTCCTCTCTTATGACAAATTGTAATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGGCTGAGAATAACTATACTCCTCTCTTATGACAAATTGTAATCA  650

seq1  TTGCAAATGGTATTTAGCAATAAATTAAGTGATAAAAATAGCATACTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAATGGTATTTAGCAATAAATTAAGTGATAAAAATAGCATACTGTT  700

seq1  TAAGCACGGTTTAATCTAAAAATCTCAAATTTATCATCTATTAGTAGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCACGGTTTAATCTAAAAATCTCAAATTTATCATCTATTAGTAGTGT  750

seq1  TTCATTTGGCAGTGCTGGAGCTCGAACCCAGGACCTCACTCACGGCAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTGGCAGTGCTGGAGCTCGAACCCAGGACCTCACTCACGGCAGGC  800

seq1  AAATGCTCGACCACTGCCCAGCATTTCTTCATAAGGAACTGGCATCTACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTCGACCACTGCCCAGCATTTCTTCATAAGGAACTGGCATCTACC  850

seq1  GGTATCTCCTGAAATGTCCAAGAAAGCTATGTGCCAGTACTCCAGAGGTC  900
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGTATCTCCTGAAATGTCCAAG-AAGCTATGTGCCAGTACTCCAGAGGTC  899

seq1  ACACCAAATCTGAGACTCTTCCTAGAGAAGAAACCTTGCCTTGGGCATGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAAATCTGAGACTCTTCCTAGAGAAGAAACCTTGCCTTGGGCATGA  949

seq1  TAACTCAGGACGGCTATTAGGGAAACCACAGCATGGATGGAATTTTCTGG  1000
      ||||||| |||||||||||||||||||||||||||||||||| |||||||
seq2  TAACTCA-GACGGCTATTAGGGAAACCACAGCATGGATGGAA-TTTCTGG  997

seq1  CAAGCATGTGAGTTATACAAAATGAACGACCAGGGAGAAAGGCTGTAG-A  1049
      |||||||||||||||||||||||||||||||||||||||| ||||||| |
seq2  CAAGCATGTGAGTTATACAAAATGAACGACCAGGGAGAAA-GCTGTAGAA  1046

seq1  AAAACACCAGTAGTTAGGATTTCTGAAG-TCTACAAAAAGAGCCTG-TGA  1097
      |||||||||||||||||||||||||||| ||||| ||||||||||| |||
seq2  AAAACACCAGTAGTTAGGATTTCTGAAGTTCTAC-AAAAGAGCCTGTTGA  1095

seq1  TGGAAA  1103
      ||||||
seq2  TGGAAA  1101