BAC Information

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BAC

Clone NameB6Ng01-230K20
Chromosome16 (Build37)
Map Location 77,238,397 - 77,425,727
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039457, Nrip1, LOC100039316, 1700063K16Rik, LOC665120, Usp25
Downstream gene2810055G20Rik, LOC435483, LOC100039561, Cxadr, Btg3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230K20.bB6Ng01-230K20.g
ACCGA043479GA043480
length1,0601,142
definitionB6Ng01-230K20.b B6Ng01-230K20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,238,397 - 77,239,447)(77,424,582 - 77,425,727)
sequence
gaattcatttatctacggaaagacatttggaagtacaatgttgtctcgca
catttgtgttttgttggtcaggataacacactttgttcgatagatggctt
aaaaagtctgaaacatgtggtctgagaagatttctatttgctttacagat
gcccaaagactgaaactgggacagactttagtgtgatttctcttaattca
tatattccatgcgttgttgccatgaaaagcatgtggttgtctagaactga
tagccaaagtccattgtctattttctattaaaggaatgctttggatataa
ttattcaaagacatggaattttaaaatacaccaacaaaggtgtcataact
gtgcacggttttttaaaagaagcttagcgagcacaatgataggcatagcc
acacgaagggtttagacaagaagcccatggcccttttaattcatgaggca
ttccgtcatcccgtcatctgtattcagggggcgactgtcctgaatcagtc
atgagctcccctgctgcagatcctgtaatttgaatcatgtgtaataatat
attatcctactgggggccctctctcagtaggaaaatggtttctacattct
ggtataagagaacttttggctgctagccgcctcacagccattactcacat
ggacagtcacagttgtcccccttaaggaataacatctgcacaaccttgtc
agccaaaattctgcaacctcccctcctcgttatgaattatgatttcttag
aattgggaaagctagaaaaactgaagcctgaaagtggaaaggctgaaaga
aacggatcaaaattttatagcacatgccaggtgacaacagctcaaattcc
catctctttgaattgatgggtaagtgggtgggaggggataacagcgatta
cacctaaatgcatttgcttgggctagacactgcttaaatgtcatgtgttc
ggtgaggacatggttgtatgttgtgtttctgtggatatcctagccaggtc
ctataaagggtggtggcaaatgggaggcgttagctggagatggaggcccc
acatgttcaa

gaattccacagttcataattattgaaatgttgtttatttctaagaagtct
aacttaagatgcaaattaggtgaaaacatgagataaaattcctaaaatta
aatgatatgctatagataatcacacactgcttaaaaagggtcatcatgtc
agctttctaagacagaaacatagtgaggtgaggatgggctatttttaagg
tgtctgtctgtttttagaatcttgttaccaagtcattatttagttctgat
ttgacaattgaaagatataactgttttctctctttgttttttgaaagtgt
ctcaaacttttggtccttctaccttgttctccagattatatatagtaaat
gtaggcttgcttgagcacacctggccattatagtactgttgatcgaggca
gggtaaagggatcaagacatgtttatctacctaaataaataaaaatacag
tagtataaattcctgatataatagccaaatactgaaagaaaaaattactg
tccagtatcccccatggctgtccattttctatatctaatatttattatta
aatagtttctaacttcaatgtgtttggacttatttatttccatcattgtt
tccatgacttaactatagagaaaaaaaaaatgcagggaaggattcaggtt
acagtattaaaatatccaaacacatgctatcctagcactggtattcctga
cacagataacatttctgtttcaccctagtctcaagataaagaaaatcctg
ttggtgaaagtgagtgtaataagatactggtataaattagtactttatat
ttactctaattcagctttggctgatcctgaaattaggtggatcatcttat
aaaaagttgattgcctgctatatgcccttcttagaggcattatgatatac
attgatatttttaaatgccataaaaactgtggtacctaagatatcatttt
tagatatgaaatctatgtaatttaacatcacccgtcctcacatttatggt
cttcctttcctcctaaatgcatacaaatgacagtggagattagtatttgg
agttcacatagttaaaaactgttacattactttcgttatgaatgatgtat
ctctaccattggacaattgttcaggtattaaagtcattacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_77238397_77239447
seq2: B6Ng01-230K20.b_45_1103

seq1  GAATTCATTTATCTACGGAAAGACATTTGGAAGTACAATGTTGTCTCGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTATCTACGGAAAGACATTTGGAAGTACAATGTTGTCTCGCA  50

seq1  CATTTGTGTTTTGTTGGTCAGGATAACACACTTTGTTCGATAGATGGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTGTTTTGTTGGTCAGGATAACACACTTTGTTCGATAGATGGCTT  100

seq1  AAAAAGTCTGAAACATGTGGTCTGAGAAGATTTCTATTTGCTTTACAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTCTGAAACATGTGGTCTGAGAAGATTTCTATTTGCTTTACAGAT  150

seq1  GCCCAAAGACTGAAACTGGGACAGACTTTAGTGTGATTTCTCTTAATTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAAGACTGAAACTGGGACAGACTTTAGTGTGATTTCTCTTAATTCA  200

seq1  TATATTCCATGCGTTGTTGCCATGAAAAGCATGTGGTTGTCTAGAACTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCCATGCGTTGTTGCCATGAAAAGCATGTGGTTGTCTAGAACTGA  250

seq1  TAGCCAAAGTCCATTGTCTATTTTCTATTAAAGGAATGCTTTGGATATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAAAGTCCATTGTCTATTTTCTATTAAAGGAATGCTTTGGATATAA  300

seq1  TTATTCAAAGACATGGAATTTTAAAATACACCAACAAAGGTGTCATAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCAAAGACATGGAATTTTAAAATACACCAACAAAGGTGTCATAACT  350

seq1  GTGCACGGTTTTTTAAAAGAAGCTTAGCGAGCACAATGATAGGCATAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACGGTTTTTTAAAAGAAGCTTAGCGAGCACAATGATAGGCATAGCC  400

seq1  ACACGAAGGGTTTAGACAAGAAGCCCATGGCCCTTTTAATTCATGAGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGAAGGGTTTAGACAAGAAGCCCATGGCCCTTTTAATTCATGAGGCA  450

seq1  TTCCGTCATCCCGTCATCTGTATTCAGGGGGCGACTGTCCTGAATCAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGTCATCCCGTCATCTGTATTCAGGGGGCGACTGTCCTGAATCAGTC  500

seq1  ATGAGCTCCCCTGCTGCAGATCCTGTAATTTGAATCATGTGTAATAATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCTCCCCTGCTGCAGATCCTGTAATTTGAATCATGTGTAATAATAT  550

seq1  ATTATCCTACTGGGGGCCCTCTCTCAGTAGGAAAATGGTTTCTACATTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCCTACTGGGGGCCCTCTCTCAGTAGGAAAATGGTTTCTACATTCT  600

seq1  GGTATAAGAGAACTTTTGGCTGCTAGCCGCCTCACAGCCATTACTCACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAAGAGAACTTTTGGCTGCTAGCCGCCTCACAGCCATTACTCACAT  650

seq1  GGACAGTCACAGTTGTCCCCCTTAAGGAATAACATCTGCACAACCTTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGTCACAGTTGTCCCCCTTAAGGAATAACATCTGCACAACCTTGTC  700

seq1  AGCCAAAATTCTGCAACCTCCCCTCCTCGTTATGAATTATGATTTCTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAAATTCTGCAACCTCCCCTCCTCGTTATGAATTATGATTTCTTAG  750

seq1  AATTGGGAAAGCTAGAAAAACTGAAGCCTGAAAGTGG-AAGGCTGAAAGA  799
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AATTGGGAAAGCTAGAAAAACTGAAGCCTGAAAGTGGAAAGGCTGAAAGA  800

seq1  AACGGATCAAAATTTTATAGCACATGCCAGGTGACAACAGCTCAAATTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGATCAAAATTTTATAGCACATGCCAGGTGACAACAGCTCAAATTCC  850

seq1  CATCTCTTTGAATTGATGGGTAAGTGGGTGG--AGGGATAACAAGCGATT  897
      |||||||||||||||||||||||||||||||   |||||||| |||||||
seq2  CATCTCTTTGAATTGATGGGTAAGTGGGTGGGAGGGGATAAC-AGCGATT  899

seq1  ACACCTAAATGCATTTGCTT-GGCTAGACACTGCTAAAATGTCATGTGTT  946
      |||||||||||||||||||| |||||||||||||| ||||||||||||||
seq2  ACACCTAAATGCATTTGCTTGGGCTAGACACTGCTTAAATGTCATGTGTT  949

seq1  CGGTGAGGACATGGTTGTATG-TGTGTTTCTGTGGATATCCTAGCCAGGT  995
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CGGTGAGGACATGGTTGTATGTTGTGTTTCTGTGGATATCCTAGCCAGGT  999

seq1  CCTATAAAAGGGTGTGGCAAAATGGA-GCGTTAGCTGAGGATGGAG--CC  1042
      |||||||| ||  ||||||||  ||| ||||||||||  |||||||  ||
seq2  CCTATAAAGGGTGGTGGCAAATGGGAGGCGTTAGCTGGAGATGGAGGCCC  1049

seq1  CACA-GTTCA  1051
      |||| |||||
seq2  CACATGTTCA  1059


seq1: chr16_77424582_77425727
seq2: B6Ng01-230K20.g_67_1208 (reverse)

seq1  CTGTAATGACTTTTATATAAAACTGAACACTTTTGTCAATAGTAAGAGAT  50
      ||||||||||||| ||    | ||||||| || |  |||| || ||||| 
seq2  CTGTAATGACTTTAAT----ACCTGAACAATTGT-CCAATGGT-AGAGA-  43

seq1  TACTATCATTCATAACAGAAGTACATGATACAGTTTTTTACATAGTGAAC  100
      ||| ||||||||||||  ||||| |||  ||||||||| ||   ||||||
seq2  TAC-ATCATTCATAACGAAAGTA-ATGTAACAGTTTTTAACTATGTGAAC  91

seq1  T-CAAATACTATTCT-CACTGTCATTTGTATGCATTTTAAGGAGGAAAGG  148
      | ||||||||| ||| |||||||||||||||||||||  |||||||||||
seq2  TCCAAATACTAATCTCCACTGTCATTTGTATGCATTT--AGGAGGAAAGG  139

seq1  AGGAACATAAATGTGA-GACGGGTGATG-TAAATTACATAGATTTCATAT  196
      | || ||||||||||| ||||||||||| |||||||||||||||||||||
seq2  AAGACCATAAATGTGAGGACGGGTGATGTTAAATTACATAGATTTCATAT  189

seq1  CTAAAAATTGATATCTTAGGTA-CACAGTTTTTATGGCATTT-AAAATAT  244
      ||||||| |||||||||||||| ||||||||||||||||||| |||||||
seq2  CTAAAAA-TGATATCTTAGGTACCACAGTTTTTATGGCATTTAAAAATAT  238

seq1  CAATGTATATCAT-ATGCCTCTAAGAAGGGCATATAGCAGGCAATCAACT  293
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAATGTATATCATAATGCCTCTAAGAAGGGCATATAGCAGGCAATCAACT  288

seq1  TTTTATAAGATGATCCACCTAATTTCAGGATCAGCCAAAGCTGAATTAGA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAAGATGATCCACCTAATTTCAGGATCAGCCAAAGCTGAATTAGA  338

seq1  GTAAATATAAAGTACTAATTTATACCAGTATCTTATTACACTCACTTTCA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATATAAAGTACTAATTTATACCAGTATCTTATTACACTCACTTTCA  388

seq1  CCAACAGGATTTTCTTTATCTTGAGACTA-GGTGAAACAGAAATGTTATC  442
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCAACAGGATTTTCTTTATCTTGAGACTAGGGTGAAACAGAAATGTTATC  438

seq1  TGTGTCAGGAATACCAGTGCTAGGATAGCATGTGTTTGGATATTTTAATA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCAGGAATACCAGTGCTAGGATAGCATGTGTTTGGATATTTTAATA  488

seq1  CTGTAACCTGAATCCTTCCCTGCATTTTTTTTTTCTCTATAGTTAAGTCA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACCTGAATCCTTCCCTGCATTTTTTTTTTCTCTATAGTTAAGTCA  538

seq1  TGGAAACAATGATGGAAATAAATAAGTCCAAACACATTGAAGTTAGAAAC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACAATGATGGAAATAAATAAGTCCAAACACATTGAAGTTAGAAAC  588

seq1  TATTTAATAATAAATATTAGATATAGAAAATGGACAGCCATGGGGGATAC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAATAATAAATATTAGATATAGAAAATGGACAGCCATGGGGGATAC  638

seq1  TGGACAGTAATTTTTTCTTTCAGTATTTGGCTATTATATCAGGAATTTAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGTAATTTTTTCTTTCAGTATTTGGCTATTATATCAGGAATTTAT  688

seq1  ACTACTGTATTTTTATTTATTTAGGTAGATAAACATGTCTTGATCCCTTT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTGTATTTTTATTTATTTAGGTAGATAAACATGTCTTGATCCCTTT  738

seq1  ACCCTGCCTCGATCAACAGTACTATAATGGCCAGGTGTGCTCAAGCAAGC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGCCTCGATCAACAGTACTATAATGGCCAGGTGTGCTCAAGCAAGC  788

seq1  CTACATTTACTATATATAATCTGGAGAACAAGGTAGAAGGACCAAAAGTT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTTACTATATATAATCTGGAGAACAAGGTAGAAGGACCAAAAGTT  838

seq1  TGAGACACTTTCAAAAAACAAAGAGAGAAAACAGTTATATCTTTCAATTG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACACTTTCAAAAAACAAAGAGAGAAAACAGTTATATCTTTCAATTG  888

seq1  TCAAATCAGAACTAAATAATGACTTGGTAACAAGATTCTAAAAACAGACA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCAGAACTAAATAATGACTTGGTAACAAGATTCTAAAAACAGACA  938

seq1  GACACCTTAAAAATAGCCCATCCTCACCTCACTATGTTTCTGTCTTAGAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCTTAAAAATAGCCCATCCTCACCTCACTATGTTTCTGTCTTAGAA  988

seq1  AGCTGACATGATGACCCTTTTTAAGCAGTGTGTGATTATCTATAGCATAT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACATGATGACCCTTTTTAAGCAGTGTGTGATTATCTATAGCATAT  1038

seq1  CATTTAATTTTAGGAATTTTATCTCATGTTTTCACCTAATTTGCATCTTA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAATTTTAGGAATTTTATCTCATGTTTTCACCTAATTTGCATCTTA  1088

seq1  AGTTAGACTTCTTAGAAATAAACAACATTTCAATAATTATGAACTGTGGA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGACTTCTTAGAAATAAACAACATTTCAATAATTATGAACTGTGGA  1138

seq1  ATTC  1146
      ||||
seq2  ATTC  1142


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