BAC Information

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BAC

Clone NameB6Ng01-231P18
Chromosome16 (Build37)
Map Location 41,174,519 - 41,280,240
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneEG667450, Lsamp, Gap43
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231P18.bB6Ng01-231P18.g
ACCGA044437GA044438
length1,023289
definitionB6Ng01-231P18.b B6Ng01-231P18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,279,225 - 41,280,240)(41,174,519 - 41,174,807)
sequence
gaattccaccaaaatatctctaagttagatatgtgaggctgagcaaatta
ttttgccctctgatgtgcttgtgactcttcttcccattctgtaatctctg
tggtgaatactaaggagttactcaggcatccaacaaaagacatttgaggt
gcatcacaaattcttttgctggtgccttgtctttactcttttcctgtgta
taacttgactcgatgccattgaggtcctttgtccaaatgaagaccatgtc
atcttaatttctgtctgatcatatgacctgtttccaaatctagctatgta
ggtctttctcctcaaaatgttcagtggagtcattagtttccaattacgac
tgctagtaaagaaatcatgccataaattagcatctaggacttttcaggat
ctaatttgttatgtgttttcacctcagtctcaatttcatgtcctgtttct
tcaacattaatcatcaggcagcatagaaagatggagcttatcctctgtca
tctaacaggtttgtggttctttgcatggatacatgccatttttctccatt
tatattgtgttctatttgcatatcacttatatcattacatattcaataaa
ttctggctgaatggtattctgaagccagacttttaacagcacttttcttg
ctaaccagtccaaaaatatatcctttaaaattcagtgagttcctcatgat
atcatggtcatgtgcaatttttcttgctgctaatctctgacccgaagttt
tgcagccttgttgagagagcactggccactgtgtccttctttcattcatg
ttgttcatcacactgaggttctctttggggtttgcctcttcttagacttc
ttgcagaattgcagcttttcctgaaaatactttcatattcgcacagggaa
accttgtttctttttggaaaggattcttacttcttaagttcacaagcttg
ttcaggtgtgtgagaagcaaagactaaggtgttcatttctatggagagct
tgccctacactcatctatctgaa

tctggaccactgagagtgctggcattttttagaaagggttgtataagaaa
tactgtggtttgtccatggcaagcaggtgagcagcatttttcaatgaact
ttgcttcaatccctccttccagcttcctggccttagctcagaccttggtt
tcctttgatatcagctcatgacctgtgaacaaaattaaccttttcctcct
caaggtagttgttctcagtgttttttttccagcaaccaagaaacaaatta
gaacacacaccaagaggtagggggattagggagggggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_41279225_41280240
seq2: B6Ng01-231P18.b_46_1068 (reverse)

seq1  TTCAGACTGATGAGGTGAGGGCAAAGCTCTC---ATGAATGAACACTCTA  47
      ||||||  ||||||   ||||| ||||||||   |  |||||||||  ||
seq2  TTCAGATAGATGAGTGTAGGGC-AAGCTCTCCATAGAAATGAACACCTTA  49

seq1  GTCTTTGCTTCTCAC-CACCTTGAACAGCTTTGTGGACTTAAGAAGTA--  94
      ||||||||||||||| |||| ||||||   ||||| ||||||||||||  
seq2  GTCTTTGCTTCTCACACACC-TGAACAAGCTTGTGAACTTAAGAAGTAAG  98

seq1  GATCCTTTCC-AAAAGAAACAGGGTTTCCTTGGTCGTATATTGAAGTATT  143
       ||||||||| |||||||||| ||||||| ||  || ||||  |||||||
seq2  AATCCTTTCCAAAAAGAAACAAGGTTTCCCTGTGCGAATATGAAAGTATT  148

seq1  TTCAGGAAAAGCTGCATTTCTGCAAG-AGTCTTAAGAGAGCAAAACCCCA  192
      |||||||||||||||| ||||||||| ||||| |  ||||  ||||||||
seq2  TTCAGGAAAAGCTGCAATTCTGCAAGAAGTCTAAGAAGAGGCAAACCCCA  198

seq1  AAGAGA--CTCAGTGTTGATGAACAACATGAATGAAAGAA-GACACAGTG  239
      ||||||  ||||||| |||||||||||||||||||||||| |||||||||
seq2  AAGAGAACCTCAGTG-TGATGAACAACATGAATGAAAGAAGGACACAGTG  247

seq1  GCCAGTGCTTCTCTCAACAAGGCTGCAAAACTTCGGGTCAGAGATTAGCA  289
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGC-TCTCTCAACAAGGCTGCAAAACTTCGGGTCAGAGATTAGCA  296

seq1  GCAAGAAAAATTGCACATGACCATGATATCATGAGGAACTCACTGAATTT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAAAAATTGCACATGACCATGATATCATGAGGAACTCACTGAATTT  346

seq1  TAAAGGATATATTTTTGGACTGGTTAGCAAGAAAAGTGCTGTTAAAAGTC  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGATATATTTTTGGACTGGTTAGCAAGAAAAGTGCTGTTAAAAGTC  396

seq1  TGGCTTCAGAATACCATTCAGCCAGAATTTATTGAATATGTAATGATATA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCAGAATACCATTCAGCCAGAATTTATTGAATATGTAATGATATA  446

seq1  AGTGATATGCAAATAGAACACAATATAAATGGAGAAAAATGGCATGTATC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATATGCAAATAGAACACAATATAAATGGAGAAAAATGGCATGTATC  496

seq1  CATGCAAAGAACCACAAACCTGTTAGATGACAGAGGATAAGCTCCATCTT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAAAGAACCACAAACCTGTTAGATGACAGAGGATAAGCTCCATCTT  546

seq1  TCTATGCTGCCTGATGATTAATGTTGAAGAAACAGGACATGAAATTGAGA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGCTGCCTGATGATTAATGTTGAAGAAACAGGACATGAAATTGAGA  596

seq1  CTGAGGTGAAAACACATAACAAATTAGATCCTGAAAAGTCCTAGATGCTA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTGAAAACACATAACAAATTAGATCCTGAAAAGTCCTAGATGCTA  646

seq1  ATTTATGGCATGATTTCTTTACTAGCAGTCGTAATTGGAAACTAATGACT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGGCATGATTTCTTTACTAGCAGTCGTAATTGGAAACTAATGACT  696

seq1  CCACTGAACATTTTGAGGAGAAAGACCTACATAGCTAGATTTGGAAACAG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAACATTTTGAGGAGAAAGACCTACATAGCTAGATTTGGAAACAG  746

seq1  GTCATATGATCAGACAGAAATTAAGATGACATGGTCTTCATTTGGACAAA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATATGATCAGACAGAAATTAAGATGACATGGTCTTCATTTGGACAAA  796

seq1  GGACCTCAATGGCATCGAGTCAAGTTATACACAGGAAAAGAGTAAAGACA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTCAATGGCATCGAGTCAAGTTATACACAGGAAAAGAGTAAAGACA  846

seq1  AGGCACCAGCAAAAGAATTTGTGATGCACCTCAAATGTCTTTTGTTGGAT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACCAGCAAAAGAATTTGTGATGCACCTCAAATGTCTTTTGTTGGAT  896

seq1  GCCTGAGTAACTCCTTAGTATTCACCACAGAGATTACAGAATGGGAAGAA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAGTAACTCCTTAGTATTCACCACAGAGATTACAGAATGGGAAGAA  946

seq1  GAGTCACAAGCACATCAGAGGGCAAAATAATTTGCTCAGCCTCACATATC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACAAGCACATCAGAGGGCAAAATAATTTGCTCAGCCTCACATATC  996

seq1  TAACTTAGAGATATTTTGGTGGAATTC  1016
      |||||||||||||||||||||||||||
seq2  TAACTTAGAGATATTTTGGTGGAATTC  1023


seq1: chr16_41174519_41174807
seq2: B6Ng01-231P18.g_74_362

seq1  TCTGGACCACTGAGAGTGCTGGCATTTTTTAGAAAGGGTTGTATAAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGACCACTGAGAGTGCTGGCATTTTTTAGAAAGGGTTGTATAAGAAA  50

seq1  TACTGTGGTTTGTCCATGGCAAGCAGGTGAGCAGCATTTTTCAATGAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGGTTTGTCCATGGCAAGCAGGTGAGCAGCATTTTTCAATGAACT  100

seq1  TTGCTTCAATCCCTCCTTCCAGCTTCCTGGCCTTAGCTCAGACCTTGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCAATCCCTCCTTCCAGCTTCCTGGCCTTAGCTCAGACCTTGGTT  150

seq1  TCCTTTGATATCAGCTCATGACCTGTGAACAAAATTAACCTTTTCCTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGATATCAGCTCATGACCTGTGAACAAAATTAACCTTTTCCTCCT  200

seq1  CAAGGTAGTTGTTCTCAGTGTTTTTTTTCCAGCAACCAAGAAACAAATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTAGTTGTTCTCAGTGTTTTTTTTCCAGCAACCAAGAAACAAATTA  250

seq1  GAACACACACCAAGAGGTAGGGGGATTAGGGAGGGGGAG  289
      |||||||||||||||||||||||||||||||||||||||
seq2  GAACACACACCAAGAGGTAGGGGGATTAGGGAGGGGGAG  289


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