BAC Information

Click to search

BAC

Clone NameB6Ng01-232C15
Chromosome16 (Build37)
Map Location 21,838,849 - 21,980,129
singlet/doubletdoublet
Overlap geneLOC546659, Map3k13, LOC624037, Tmem41a, Liph
Upstream geneEG625060, LOC625123, LOC676915, 2310042E22Rik, Ephb3, 6430590I03Rik, Vps8, 2510009E07Rik, Ehhadh, LOC100043489
Downstream geneSenp2, EG239760, Igf2bp2, EG545152, EG666421, Sfrs10, LOC100043507, Etv5, Dgkg, LOC671242, LOC666459, Crygs, Tbccd1, Dnajb11, Ahsg, Fetub, Hrg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232C15.bB6Ng01-232C15.g
ACCGA044569GA044570
length2611,135
definitionB6Ng01-232C15.b B6Ng01-232C15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,979,869 - 21,980,129)(21,838,849 - 21,839,971)
sequence
tgagtctcagtgttcttgcttgggtgtgctcactgggtcacggggtggaa
tgtgatctgtcacattcactattctttcttttttttcttccttctgaacc
ttccttttcaaaagccaatgcttattttgcacctacagcccatctcagtt
cacaccggcttcatttcaagtgtccagtggctacagggacctaacagtta
ctgtattgtttgtgattggacacaagtcattgttatttcctgagaccagg
gtaggtcagct
gaattctcaggaaggtatttaaaggctagagcaccaagaagtttatgggt
tgttggttggttgctgttggttgttgttggttgcagttggttgcagttgg
tcacagtttattaagtagtcctatgcaagaataaattagatattctgaca
gcaaagatgaaacttgttccaaggagctcgacattgttaatcagcaggac
gtcgtctaatgataacatcaccccctttcctttctatttctcctagctag
tgttgggggttgaaaaggtgaaaaaagggtggagaagggtggaagaaaga
agaacccatgaagtagcaaaagacagctacagaaacctctgtgtgtggtt
tccagggtatctgtacactgccgagtcctcttctcgcacactttgctctg
tttttgccatctcttacttaagttacctgccaagctttaatcctcagcca
tattgagattaggtcagaacttatggattcatttgggcagaagtagtttt
tagccaccagcagtttctatctgttactaaaacagacaggtctcccttat
tttggcatagtgactgaatgtgacaggaaaccgagagcttttccattgtg
gcttgttacttggttgtaagtatattgtctgaacatagcatcaattatac
tatggagtgaatattaaaataattcttttcttgagagatttttgcacact
gtcctctttgctccgctattgttgttaactgtaaagtgagggcagtagta
ctaattgtgactctacacagtaacagcctatttgtggagagttgtataaa
cacatttttataactgagtccatactttccttgattcagttgtttatgtc
tataatctgtaagacttctatttctttcttttcttttttttgaagtattt
gtacactatgatctcaccagaaggatgctttttaaatatttttcgagcca
gagtgtcatggagtctgagctagcctcaactcactctgtagtcgaggatg
acaatcaacttctgagcctcctgtgtcacttcccaagttgtgcacgtgtg
ccagcccccacactctaatgcacttgtgtccctttactcatggaagttcc
taatatgtgcttcgacagtgttgtacactgggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_21979869_21980129
seq2: B6Ng01-232C15.b_50_310 (reverse)

seq1  AGCTGACCTACCCTGGTCTCAGGAAATAACAATGACTTGTGTCCAATCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACCTACCCTGGTCTCAGGAAATAACAATGACTTGTGTCCAATCAC  50

seq1  AAACAATACAGTAACTGTTAGGTCCCTGTAGCCACTGGACACTTGAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATACAGTAACTGTTAGGTCCCTGTAGCCACTGGACACTTGAAATG  100

seq1  AAGCCGGTGTGAACTGAGATGGGCTGTAGGTGCAAAATAAGCATTGGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCGGTGTGAACTGAGATGGGCTGTAGGTGCAAAATAAGCATTGGCTT  150

seq1  TTGAAAAGGAAGGTTCAGAAGGAAGAAAAAAAAGAAAGAATAGTGAATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAGGAAGGTTCAGAAGGAAGAAAAAAAAGAAAGAATAGTGAATGT  200

seq1  GACAGATCACATTCCACCCCGTGACCCAGTGAGCACACCCAAGCAAGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATCACATTCCACCCCGTGACCCAGTGAGCACACCCAAGCAAGAAC  250

seq1  ACTGAGACTCA  261
      |||||||||||
seq2  ACTGAGACTCA  261

seq1: chr16_21838849_21839971
seq2: B6Ng01-232C15.g_68_1202

seq1  GAATTCTCAGGAAGGTATTTAAAGGCTAGAGCACCAAGAAGTTTATGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGGAAGGTATTTAAAGGCTAGAGCACCAAGAAGTTTATGGGT  50

seq1  TGTTGGTTGGTTGCTGTTGGTTGTTGTTGGTTGCAGTTGGTTGCAGTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGTTGGTTGCTGTTGGTTGTTGTTGGTTGCAGTTGGTTGCAGTTGG  100

seq1  TCACAGTTTATTAAGTAGTCCTATGCAAGAATAAATTAGATATTCTGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTTTATTAAGTAGTCCTATGCAAGAATAAATTAGATATTCTGACA  150

seq1  GCAAAGATGAAACTTGTTCCAAGGAGCTCGACATTGTTAATCAGCAGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGATGAAACTTGTTCCAAGGAGCTCGACATTGTTAATCAGCAGGAC  200

seq1  GTCGTCTAATGATAACATCACCCCCTTTCCTTTCTATTTCTCCTAGCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTCTAATGATAACATCACCCCCTTTCCTTTCTATTTCTCCTAGCTAG  250

seq1  TGTTGGGGGTTGAAAAGGTGAAAAAAGGGTGGAGAAGGGTGGAAGAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGGGTTGAAAAGGTGAAAAAAGGGTGGAGAAGGGTGGAAGAAAGA  300

seq1  AGAACCCATGAAGTAGCAAAAGACAGCTACAGAAACCTCTGTGTGTGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCATGAAGTAGCAAAAGACAGCTACAGAAACCTCTGTGTGTGGTT  350

seq1  TCCAGGGTATCTGTACACTGCCGAGTCCTCTTCTCGCACACTTTGCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGTATCTGTACACTGCCGAGTCCTCTTCTCGCACACTTTGCTCTG  400

seq1  TTTTTGCCATCTCTTACTTAAGTTACCTGCCAAGCTTTAATCCTCAGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCCATCTCTTACTTAAGTTACCTGCCAAGCTTTAATCCTCAGCCA  450

seq1  TATTGAGATTAGGTCAGAACTTATGGATTCATTTGGGCAGAAGTAGTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGATTAGGTCAGAACTTATGGATTCATTTGGGCAGAAGTAGTTTT  500

seq1  TAGCCACCAGCAGTTTCTATCTGTTACTAAAACAGACAGGTCTCCCTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCACCAGCAGTTTCTATCTGTTACTAAAACAGACAGGTCTCCCTTAT  550

seq1  TTTGGCATAGTGACTGAATGTGACAGGAAACCGAGAGCTTTTCCATTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCATAGTGACTGAATGTGACAGGAAACCGAGAGCTTTTCCATTGTG  600

seq1  GCTTGTTACTTGGTTGTAAGTATATTGTCTGAACATAGCATCAATTATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTACTTGGTTGTAAGTATATTGTCTGAACATAGCATCAATTATAC  650

seq1  TATGGAGTGAATATTAAAATAAT--CTTTCTTGAGAGATTTTTGCACACT  698
      |||||||||||||||||||||||   ||||||||||||||||||||||||
seq2  TATGGAGTGAATATTAAAATAATTCTTTTCTTGAGAGATTTTTGCACACT  700

seq1  GTCCTCTTTGCTCCGCTATTGTTGTTAACTGTAAAGTGAGGGCAGTAGTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTTTGCTCCGCTATTGTTGTTAACTGTAAAGTGAGGGCAGTAGTA  750

seq1  CTAATTGTGACTCTACACAGTAACAGCCTATTTGTGGAGAGTTGTATAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTGTGACTCTACACAGTAACAGCCTATTTGTGGAGAGTTGTATAAA  800

seq1  CACATTTTTATAACTGAGTCCATAC-TTCCTTGATTCAG-TGTTTATGTC  846
      ||||||||||||||||||||||||| ||||||||||||| ||||||||||
seq2  CACATTTTTATAACTGAGTCCATACTTTCCTTGATTCAGTTGTTTATGTC  850

seq1  TTATAATCTGTAAGACTTCTATTTCTTTCTTTTC-TTTTTTTGAAGTATT  895
       ||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  -TATAATCTGTAAGACTTCTATTTCTTTCTTTTCTTTTTTTTGAAGTATT  899

seq1  TGTACACTATGATCTCACCAGAAGGATGC-TTTTAAATA-TTTTCGAGCC  943
      ||||||||||||||||||||||||||||| ||||||||| ||||||||||
seq2  TGTACACTATGATCTCACCAGAAGGATGCTTTTTAAATATTTTTCGAGCC  949

seq1  AGAGTGTCATGGAGCCTGAGCTAGCCTCAAACTCACTCTGTAGTCGAGGA  993
      |||||||||||||| ||||||||||||| |||||||||||||||||||||
seq2  AGAGTGTCATGGAGTCTGAGCTAGCCTC-AACTCACTCTGTAGTCGAGGA  998

seq1  TGACAATCAACTTCTGAGCCTCCTGTGTCACCTCCCAAG-TGTGCACGTG  1042
      ||||||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  TGACAATCAACTTCTGAGCCTCCTGTGTCACTTCCCAAGTTGTGCACGTG  1048

seq1  TG-CAG-CCCCACAC-CTAATGCAC---TGTGCCCTTACACATGGAAAGT  1086
      || ||| |||||||| |||||||||   ||| || |||| |||||||  |
seq2  TGCCAGCCCCCACACTCTAATGCACTTGTGTCCCTTTACTCATGGAAGTT  1098

seq1  CCTAATATGTGCCTCAGCAGTGTTGTAC-CTGGTGTGG  1123
      |||||||||||| ||  ||||||||||| |||| ||||
seq2  CCTAATATGTGCTTCGACAGTGTTGTACACTGG-GTGG  1135