BAC Information

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BAC

Clone NameB6Ng01-232N04
Chromosome16 (Build37)
Map Location 42,185,150 - 42,306,238
singlet/doubletdoublet
Overlap geneGap43
Upstream geneEG667450, Lsamp
Downstream geneBC002163
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232N04.bB6Ng01-232N04.g
ACCGA045060GA045061
length672571
definitionB6Ng01-232N04.b B6Ng01-232N04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,185,150 - 42,185,820)(42,305,678 - 42,306,238)
sequence
gaattctttctaggtgggggaattgcctcgattcaaaaacgcttgggtca
tgcatttgacatctcccttggtaagcagactttgtcagtatagaccgtgg
gaaggggaggtaagaggaccgggagtttgatacacagtgagtataaagcc
agcctaggctaaataatatcaagtctcgaaaagaaggaaaggaggggaga
aatggaagggaggagagaggaagaaagtgccttataattctggatcttct
aaccagcctcccacctcttcaccttcccacagaccccacccactacagtg
gtgcctggtgactatgggtcaggtcaggtgagttagggacccctttatct
ctcctgctgcgcacccacaatccacagctttcagcatgtgtcttgagggt
aatgactgttacaacctagaaagacaccgaggccttcttatacatctttt
ttatttattttattttaacatattccattttccagagagaactcaagccc
aagccagacttcttgttttagcagatgaaggtttcttattccatgtaaca
gcacgttggtgtttccttctcttaatcacaatgcatggaggtgtaaaggt
tctgtcaagaagtttaactaaccaagaatcccatttaaccaatgcagcct
tgcacccttgaatgcacagaag

gaattcttgtttgggaggtaattgcttcttgcataggcttgttttgaaga
acaaaagctcgagcctctgtcccagacctctcagaagaacagtgagggcc
aatgggctgggctcctttcttagtcttcttaaatcaaccagcttgctcct
gctgcttatgcagagacctgggtgggttacacagcaggtgacaaagaatg
ggaaaagctaactgggtcaattggaagtctgtctccatttttttttccct
gacttggaggctgctaagggcacattagcatcccttaggctatgttcact
gtttccttcagcgggacaaggggagaccatagcaaagggctggatggttt
ctttacctcagcagaatcagacatttgcaaactaagtaagaatcatggaa
gatgttacaaaagagaaagccagctaaggcaaaaccagggactccatttg
aaaacaatgacccttcggaattattagtattcatttacatttatttaggt
ttcttgagtaactgcacacagtcctctctctctctctctctctctctctc
tctctctctctgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_42185150_42185820
seq2: B6Ng01-232N04.b_49_720

seq1  GAATTCTTTCTAGGTGGGGGAATTGCCTCGATTCAAAAACGCTTGGGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTAGGTGGGGGAATTGCCTCGATTCAAAAACGCTTGGGTCA  50

seq1  TGCATTTGACATCTCCCTTGGTAAGCAGACTTTGTCAGTATAGACCGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTGACATCTCCCTTGGTAAGCAGACTTTGTCAGTATAGACCGTGG  100

seq1  GAAGGGGAGGTAAGAGGACCGGGAGTTTGATACACAGTGAGTATAAAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGAGGTAAGAGGACCGGGAGTTTGATACACAGTGAGTATAAAGCC  150

seq1  AGCCTAGGCTAAATAATATCAAGTCTCGAAAAGAAGGAAAGGAGGGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGGCTAAATAATATCAAGTCTCGAAAAGAAGGAAAGGAGGGGAGA  200

seq1  AATGGAAGGGAGGAGAGAGGAAGAAAGTGCCTTATAATTCTGGATCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAGGGAGGAGAGAGGAAGAAAGTGCCTTATAATTCTGGATCTTCT  250

seq1  AACCAGCCTCCCACCTCTTCACCTTCCCACAGACCCCACCCACTACAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGCCTCCCACCTCTTCACCTTCCCACAGACCCCACCCACTACAGTG  300

seq1  GTGCCTGGTGACTATGGGTCAGGTCAGGTGAGTTAGGGACCCCTTTATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGGTGACTATGGGTCAGGTCAGGTGAGTTAGGGACCCCTTTATCT  350

seq1  CTCCTGCTGCGCACCCACAATCCACAGCTTTCAGCATGTGTCTTGAGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCTGCGCACCCACAATCCACAGCTTTCAGCATGTGTCTTGAGGGT  400

seq1  AATGACTGTTACAACCTAGAAAGACACCGAGGCCTTCTTATACATCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTGTTACAACCTAGAAAGACACCGAGGCCTTCTTATACATCTTTT  450

seq1  TTATTTATTTTATTTTAACATATTCCATTTTCCAGAGAGAACTCAAGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTTTATTTTAACATATTCCATTTTCCAGAGAGAACTCAAGCCC  500

seq1  AAGCCAGACTTCTTGTTTTAGCAGATGAAGGTTTCTTATTCCATGTAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGACTTCTTGTTTTAGCAGATGAAGGTTTCTTATTCCATGTAACA  550

seq1  GCACGTTGGTGTTTCCTTCTCTTAATCACAATGCATGGAGGTGTAAAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGTTGGTGTTTCCTTCTCTTAATCACAATGCATGGAGGTGTAAAGGT  600

seq1  ACTGTCAAGAAGTTGAACAAACCAAGAATCCCATTTAACCAATGCTGCCT  650
       ||||||||||||| ||| |||||||||||||||||||||||||| ||||
seq2  TCTGTCAAGAAGTTTAACTAACCAAGAATCCCATTTAACCAATGCAGCCT  650

seq1  TGCA-CCTTGAATGCACAGAAG  671
      |||| |||||||||||||||||
seq2  TGCACCCTTGAATGCACAGAAG  672


seq1: chr16_42305678_42306238
seq2: B6Ng01-232N04.g_70_630 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGACTGTGTGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGACTGTGTGCAG  50

seq1  TTACTCAAGAAACCTAAATAAATGTAAATGAATACTAATAATTCCGAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCAAGAAACCTAAATAAATGTAAATGAATACTAATAATTCCGAAGG  100

seq1  GTCATTGTTTTCAAATGGAGTCCCTGGTTTTGCCTTAGCTGGCTTTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTGTTTTCAAATGGAGTCCCTGGTTTTGCCTTAGCTGGCTTTCTCT  150

seq1  TTTGTAACATCTTCCATGATTCTTACTTAGTTTGCAAATGTCTGATTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAACATCTTCCATGATTCTTACTTAGTTTGCAAATGTCTGATTCTG  200

seq1  CTGAGGTAAAGAAACCATCCAGCCCTTTGCTATGGTCTCCCCTTGTCCCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTAAAGAAACCATCCAGCCCTTTGCTATGGTCTCCCCTTGTCCCG  250

seq1  CTGAAGGAAACAGTGAACATAGCCTAAGGGATGCTAATGTGCCCTTAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGAAACAGTGAACATAGCCTAAGGGATGCTAATGTGCCCTTAGCA  300

seq1  GCCTCCAAGTCAGGGAAAAAAAAATGGAGACAGACTTCCAATTGACCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCAAGTCAGGGAAAAAAAAATGGAGACAGACTTCCAATTGACCCAG  350

seq1  TTAGCTTTTCCCATTCTTTGTCACCTGCTGTGTAACCCACCCAGGTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTTTCCCATTCTTTGTCACCTGCTGTGTAACCCACCCAGGTCTCT  400

seq1  GCATAAGCAGCAGGAGCAAGCTGGTTGATTTAAGAAGACTAAGAAAGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAGCAGCAGGAGCAAGCTGGTTGATTTAAGAAGACTAAGAAAGGAG  450

seq1  CCCAGCCCATTGGCCCTCACTGTTCTTCTGAGAGGTCTGGGACAGAGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCCATTGGCCCTCACTGTTCTTCTGAGAGGTCTGGGACAGAGGCT  500

seq1  CGAGCTTTTGTTCTTCAAAACAAGCCTATGCAAGAAGCAATTACCTCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCTTTTGTTCTTCAAAACAAGCCTATGCAAGAAGCAATTACCTCCCA  550

seq1  AACAAGAATTC  561
      |||||||||||
seq2  AACAAGAATTC  561


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