BAC Information

Click to search

BAC

Clone NameB6Ng01-233L20
Chromosome16 (Build37)
Map Location 70,414,707 - 70,415,897
singlet/doubletsinglet
Overlap geneGbe1
Upstream geneSpeer2, EG664930
Downstream geneD16Ertd519e, LOC100039231
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233L20.bB6Ng01-233L20.g
ACCGA045710GA045711
length1,173989
definitionB6Ng01-233L20.b B6Ng01-233L20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctgcatcctatgcgcttgttggaagaagactacagacattttct
gggactgttttcccgtgttgttgctgttgatttgctacaactaaaatggt
tgtgtcttatgaggaagtaaaattcaaatatagatgctgaggaaaaggaa
gaaaacattcagtaaagatgtcactgcctttagcttctctgctgaacaaa
gtaaactaacatccgctcttctcatctgatctgtgtacttcctcattaaa
atcagcacaggtttaatattacaactaatcaaaattgtcttcacattttt
gctagacctgatatctacaaaagagttaagaaattaaaaaaaaaaaaaaa
aaaagaaatgatatataaggaaacaattccattcttcaaagtcctagatc
ccaatcaaacaattatgtgcctcaaataacggaatccttggaacagttat
tagaatgtgacctaggaacagcagcatcagcaccacttggataattgtta
cattcaagttcccaggccagcctgacctactgagccagcatggctggtct
ctcgggtgatggagacacgtattaaagtttgagagcttagacttcggcat
actgctacacggacttgggtggaatggctatggtggaagcaaaaaaatca
cactatgactagttcctctttgacataagaatttttagctgaacgcaaat
aaaggaccagttctctctgcactccctcttttctgcaggagggcagaata
cagatatttctctgaagagagaaatcccagagaagataagggaaccagca
aataaaccttaccccattggtgtcatcccaagagtgacccccagggtgtc
tctctcctgaagagcctaaaactgcttcctattattcttaccttacctta
taatactatcattcattgtcaagtatggtacataccctagaactctaagc
accactctgaatacgtttttctttcagtttcccacatgtaatgtaccccc
accccaccccccacactcataacacagttattgtttgtttatatgtttgt
ctctgtcatttgtctagcctattgtcatttgtcaggtgccctatggaact
cctgaccggaagattcacctcaattcacatgctgaaggtacaaggtcaag
ggctagttttaggagagccaata

gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatccaacgagatgatcatgtggtttttgtcttt
gagtttgtttatatagtggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttgggt
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccattttgtccaggttttcca
gttttgttgagtataaccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taagattttgtccctgtgccctttagtgggtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
ataattcttcttgtttccacttggttgatttcacccctgagtttgattat
ttcctgccatctactcctcttgggtgaatttgcttccttttttctagagc
ttttatatgtgttgtcaagctgctagtatgtgctctctcccgtttcttct
tgggggcactcagagctatgagtttccctcttagaatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_70414707_70415897
seq2: B6Ng01-233L20.b_44_1216 (reverse)

seq1  TATTGGCTCTCCT-AAACTACCCCCTTGCCCTTGTCCCTCCCAGCCATGC  49
      ||||||||||||| ||||||  |||||| |||||| |||  ||| |||| 
seq2  TATTGGCTCTCCTAAAACTA-GCCCTTGACCTTGTACCT-TCAG-CATG-  46

seq1  TGATTTGAAGGTGAATCTTTTCCTGTCCAGGAATTTCAATTGGGCACCCT  99
      ||| ||| |||||||||  |||| || |||| | ||| || |||||||  
seq2  TGAATTG-AGGTGAATC--TTCCGGT-CAGG-AGTTCCATAGGGCACC--  89

seq1  TGACCAAATGACAAATAGCTAGACAAATGACAGAAGACAAAACATATAAA  149
      ||| ||||||||||   |||||||||||||||| |||| |||||||||||
seq2  TGA-CAAATGACAATAGGCTAGACAAATGACAG-AGAC-AAACATATAAA  136

seq1  CAAACAATAAACTGTGTTAATGAGTGTGGGGGGTGGGGGTGGGGGGTACA  199
      |||||||| ||||||||| |||||||||||||||||||   |||||||||
seq2  CAAACAAT-AACTGTGTT-ATGAGTGTGGGGGGTGGGG--TGGGGGTACA  182

seq1  TTACATGTGGGAAACCTGAAAG-AAAACGTATTCAGAGTGGTTGCTTAGA  248
      |||||||||||||| ||||||| |||||||||||||||||| ||||||||
seq2  TTACATGTGGGAAA-CTGAAAGAAAAACGTATTCAGAGTGG-TGCTTAGA  230

seq1  GTTCTAGGGTATGTACCATACTTGACAATGAATGATAGTATTATAAGGTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAGGGTATGTACCATACTTGACAATGAATGATAGTATTATAAGGTA  280

seq1  AGGTAAGAATAATAGGAAGCAGTTTTAGGCTCTTCAGGAGAGAGACACCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGAATAATAGGAAGCAGTTTTAGGCTCTTCAGGAGAGAGACACCC  330

seq1  TGGGGGTCACTCTTGGGATGACACCAATGGGGTAAGGTTTATTTGCTGGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGTCACTCTTGGGATGACACCAATGGGGTAAGGTTTATTTGCTGGT  380

seq1  TCCCTTATCTTCTCTGGGATTTCTCTCTTCAGAGAAATATCTGTATTCTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTATCTTCTCTGGGATTTCTCTCTTCAGAGAAATATCTGTATTCTG  430

seq1  CCCTCCTGCAGAAAAGAGGGAGTGCAGAGAGAACTGGTCCTTTATTTGCG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTGCAGAAAAGAGGGAGTGCAGAGAGAACTGGTCCTTTATTTGCG  480

seq1  TTCAGCTAAAAATTCTTATGTCAAAGAGGAACTAGTCATAGTGTGATTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTAAAAATTCTTATGTCAAAGAGGAACTAGTCATAGTGTGATTTT  530

seq1  TTTGCTTCCACCATAGCCATTCCACCCAAGTCCGTGTAGCAGTATGCCGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTCCACCATAGCCATTCCACCCAAGTCCGTGTAGCAGTATGCCGA  580

seq1  AGTCTAAGCTCTCAAACTTTAATACGTGTCTCCATCACCCGAGAGACCAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAAGCTCTCAAACTTTAATACGTGTCTCCATCACCCGAGAGACCAG  630

seq1  CCATGCTGGCTCAGTAGGTCAGGCTGGCCTGGGAACTTGAATGTAACAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTGGCTCAGTAGGTCAGGCTGGCCTGGGAACTTGAATGTAACAAT  680

seq1  TATCCAAGTGGTGCTGATGCTGCTGTTCCTAGGTCACATTCTAATAACTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAAGTGGTGCTGATGCTGCTGTTCCTAGGTCACATTCTAATAACTG  730

seq1  TTCCAAGGATTCCGTTATTTGAGGCACATAATTGTTTGATTGGGATCTAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGGATTCCGTTATTTGAGGCACATAATTGTTTGATTGGGATCTAG  780

seq1  GACTTTGAAGAATGGAATTGTTTCCTTATATATCATTTCTTTTTTTTTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGAAGAATGGAATTGTTTCCTTATATATCATTTCTTTTTTTTTTT  830

seq1  TTTTTTTTAATTTCTTAACTCTTTTGTAGATATCAGGTCTAGCAAAAATG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAATTTCTTAACTCTTTTGTAGATATCAGGTCTAGCAAAAATG  880

seq1  TGAAGACAATTTTGATTAGTTGTAATATTAAACCTGTGCTGATTTTAATG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACAATTTTGATTAGTTGTAATATTAAACCTGTGCTGATTTTAATG  930

seq1  AGGAAGTACACAGATCAGATGAGAAGAGCGGATGTTAGTTTACTTTGTTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTACACAGATCAGATGAGAAGAGCGGATGTTAGTTTACTTTGTTC  980

seq1  AGCAGAGAAGCTAAAGGCAGTGACATCTTTACTGAATGTTTTCTTCCTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGAAGCTAAAGGCAGTGACATCTTTACTGAATGTTTTCTTCCTTT  1030

seq1  TCCTCAGCATCTATATTTGAATTTTACTTCCTCATAAGACACAACCATTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGCATCTATATTTGAATTTTACTTCCTCATAAGACACAACCATTT  1080

seq1  TAGTTGTAGCAAATCAACAGCAACAACACGGGAAAACAGTCCCAGAAAAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGTAGCAAATCAACAGCAACAACACGGGAAAACAGTCCCAGAAAAT  1130

seq1  GTCTGTAGTCTTCTTCCAACAAGCGCATAGGATGCAGGAATTC  1191
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTAGTCTTCTTCCAACAAGCGCATAGGATGCAGGAATTC  1173


| Home | SequenceCutter | Blast | Download |