BAC Information

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BAC

Clone NameB6Ng01-235L06
Chromosome16 (Build37)
Map Location 63,161,354 - 63,316,684
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1
Downstream geneEpha3, LOC100043540
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235L06.bB6Ng01-235L06.g
ACCGA047112GA047113
length1,1121,048
definitionB6Ng01-235L06.b B6Ng01-235L06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,315,569 - 63,316,684)(63,161,354 - 63,162,397)
sequence
gaattcaacatccggcttcagggtaagttttatatttttcaggtcagcaa
agcaaaccactttttttaaaatagactagtagccatgagggacaaaggag
ttcctcatttcattccatacagattcattgctatgaggacaaaggtgact
ttgggctaactactcactaactgctgtatgctgctgcccatgaactagac
agcacagtcatgcctactgccccaaactgaggtaacacacgctgcacaaa
gatgctatgccatctttccaaaccttcagataccattggaaaattagtct
gtgtaggctccattttcctgggatacatctttacaaataaataagtatag
acctagaaaaatattttgctcgatcttattgatatcccagatcaatgact
ttgagtacttcttgatacatagaatgcataaagaattacaaattctaaaa
cataaaggaattgtctcagaattttaaaattggaactcggtggtctgggg
aaatgcctcagtgagtaaacacactagccacaaacttcataatctgagta
cgctccccagaggccacgtaggaaaccagatgtgcacatttgtaatccct
gcattcatagctcaagatgggaggcgagactgaggtattaacttttgggc
aaagcctggagcaagctacacatcacagaaaaaaaaaaagagagagaggc
agcttcaatgaagtggataaaagacctcattcctgaaagtcagcctctta
cctctgacctccacacacctgtacctgctcacatacacacacacacacac
acacacactgatgcatataggcacatacaggcacagttgcacacacacaa
acacaaaggcacacaaacacacacacacaaacacgtgcctgtggacactt
gcacgtagtgtgctgaagtatttccaatgagcaactcccatttgtgtagt
ttgttagagtaaccattccagaataacttcactttttgtaccaaatgtct
atgtgcttactataaaacatgtgaactgaccagctttatttggaacattt
agtttacaagtatatattggggtagactgcatttttattgcaagttttgg
aacaatagctat

gaattccaaagttctcatgtcaaaacgaggaaattcagatctagaaagtt
caattgtttcagaaatgttatacactaagtgttagtaggaaatctgaatg
gaacagtgtctgcctcaggtttcaactgtggcaccataaaggacggtata
acataacagatttgggggcggacatgcccagcccattactgatgtttgaa
agaattgtatgaaacacagtcttggagtgcagtgattgctcagtggtcag
agtgctttcagtgccagtgtgaggacacagttaagattctgagaacctat
atgccaatgttttgtgggtgtgtcagactgcctgaaatatgcctctcaaa
gacattggatccctagagaaagctgggtagggagacttgccagatatgtg
agggctgggtggattgagagaatctgcctaaatgcataaagtggaagaat
tattgaggaaaattcctgatatcaatattaggcatccacctacacctgtc
cacatacatacatacatgcatacacacacacacacacacacacagacaca
cacacacacagacacacacacacacacacacacaaacacacacacacaca
cacacacacacacacacacacacacacacacacagaggaaattttacaaa
gagggaaatcacacatttctttgcctgattaggaactagacgcagccatt
ctatctgagacagtgaacaaaagaagaaattggtatggagacatctctgt
agtaaattcttgcactgatttgagcttccaagtgatagggaatacggaac
atttacattgagcagtcttgtggcccatgagagcatactttacattctac
acccatactttggtgatagagttgtgggctgcactggaattgcctgactg
ccccacagttcacgcgcatgctttttttttttttttttttggacaaccac
ataattgggtcatgttaaaaaaaaaatcttatgtaaatagaaagcaatta
gggtgggtttctctctctctctctctctctcttctctctctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_63315569_63316684
seq2: B6Ng01-235L06.b_48_1159 (reverse)

seq1  ATAGCTTATTTGTTCCAAAACTTGC-ATAAAATTGCAGTCTTACCCAATA  49
      ||||||   |||||||||||||||| |||||| ||||||||  |||||||
seq2  ATAGCT--ATTGTTCCAAAACTTGCAATAAAAATGCAGTCTACCCCAATA  48

seq1  TATTACTTGTAAACTAAATGTTCCAAATTAAAAGCTGGTCAGTTCACATG  99
      || |||||||||||||||||||||||||  ||||||||||||||||||||
seq2  TA-TACTTGTAAACTAAATGTTCCAAAT--AAAGCTGGTCAGTTCACATG  95

seq1  TTTTTATAGTAAGCACATAGACATTTGGTACAAAAAGTGAAGTTATTCTG  149
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTTTATAGTAAGCACATAGACATTTGGTACAAAAAGTGAAGTTATTCTG  144

seq1  GAATGGTTACTCTAACAAACTACACAAATGGGAGTTGCTCATTGGAAATA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGTTACTCTAACAAACTACACAAATGGGAGTTGCTCATTGGAAATA  194

seq1  CTTCAGCACACTACGTGCAAGTGTCCACAGGCACGTGTTTGTGTGTGTGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCACACTACGTGCAAGTGTCCACAGGCACGTGTTTGTGTGTGTGT  244

seq1  GTTTGTGTGCCTTTGTGTTTGTGTGTGTGCAACTGTGCCTGTATGTGCCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGTGCCTTTGTGTTTGTGTGTGTGCAACTGTGCCTGTATGTGCCT  294

seq1  ATATGCATCAGTGTGTGTGTGTGTGTGTGTGTGTATGTGAGCAGGTACAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCATCAGTGTGTGTGTGTGTGTGTGTGTGTATGTGAGCAGGTACAG  344

seq1  GTGTGTGGAGGTCAGAGGTAAGAGGCTGACTTTCAGGAATGAGGTCTTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGGAGGTCAGAGGTAAGAGGCTGACTTTCAGGAATGAGGTCTTTT  394

seq1  ATCCACTTCATTGAAGCTGCCTCTCTCTCTTTTTTTTTTTCTGTGATGTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTTCATTGAAGCTGCCTCTCTCTCTTTTTTTTTTTCTGTGATGTG  444

seq1  TAGCTTGCTCCAGGCTTTGCCCAAAAGTTAATACCTCAGTCTCGCCTCCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTGCTCCAGGCTTTGCCCAAAAGTTAATACCTCAGTCTCGCCTCCC  494

seq1  ATCTTGAGCTATGAATGCAGGGATTACAAATGTGCACATCTGGTTTCCTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGAGCTATGAATGCAGGGATTACAAATGTGCACATCTGGTTTCCTA  544

seq1  CGTGGCCTCTGGGGAGCGTACTCAGATTATGAAGTTTGTGGCTAGTGTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGCCTCTGGGGAGCGTACTCAGATTATGAAGTTTGTGGCTAGTGTGT  594

seq1  TTACTCACTGAGGCATTTCCCCAGACCACCGAGTTCCAATTTTAAAATTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCACTGAGGCATTTCCCCAGACCACCGAGTTCCAATTTTAAAATTC  644

seq1  TGAGACAATTCCTTTATGTTTTAGAATTTGTAATTCTTTATGCATTCTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAATTCCTTTATGTTTTAGAATTTGTAATTCTTTATGCATTCTAT  694

seq1  GTATCAAGAAGTACTCAAAGTCATTGATCTGGGATATCAATAAGATCGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAAGAAGTACTCAAAGTCATTGATCTGGGATATCAATAAGATCGAG  744

seq1  CAAAATATTTTTCTAGGTCTATACTTATTTATTTGTAAAGATGTATCCCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATTTTTCTAGGTCTATACTTATTTATTTGTAAAGATGTATCCCA  794

seq1  GGAAAATGGAGCCTACACAGACTAATTTTCCAATGGTATCTGAAGGTTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATGGAGCCTACACAGACTAATTTTCCAATGGTATCTGAAGGTTTG  844

seq1  GAAAGATGGCATAGCATCTTTGTGCAGCGTGTGTTACCTCAGTTTGGGGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATGGCATAGCATCTTTGTGCAGCGTGTGTTACCTCAGTTTGGGGC  894

seq1  AGTAGGCATGACTGTGCTGTCTAGTTCATGGGCAGCAGCATACAGCAGTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGCATGACTGTGCTGTCTAGTTCATGGGCAGCAGCATACAGCAGTT  944

seq1  AGTGAGTAGTTAGCCCAAAGTCACCTTTGTCCTCATAGCAATGAATCTGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTAGTTAGCCCAAAGTCACCTTTGTCCTCATAGCAATGAATCTGT  994

seq1  ATGGAATGAAATGAGGAACTCCTTTGTCCCTCATGGCTACTAGTCTATTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATGAAATGAGGAACTCCTTTGTCCCTCATGGCTACTAGTCTATTT  1044

seq1  TAAAAAAAGTGGTTTGCTTTGCTGACCTG-ACAATATAAAACTTACCCTG  1098
      ||||||||||||||||||||||||||||| | ||||||||||||||||||
seq2  TAAAAAAAGTGGTTTGCTTTGCTGACCTGAAAAATATAAAACTTACCCTG  1094

seq1  AAGCCGGATGTTGAATTC  1116
      ||||||||||||||||||
seq2  AAGCCGGATGTTGAATTC  1112


seq1: chr16_63161354_63162397
seq2: B6Ng01-235L06.g_66_1113

seq1  GAATTCCAAAGTTCTCATGTCAAAACGAGGAAATTCAGATCTAGAAAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAGTTCTCATGTCAAAACGAGGAAATTCAGATCTAGAAAGTT  50

seq1  CAATTGTTTCAGAAATGTTATACACTAAGTGTTAGTAGGAAATCTGAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGTTTCAGAAATGTTATACACTAAGTGTTAGTAGGAAATCTGAATG  100

seq1  GAACAGTGTCTGCCTCAGGTTTCAACTGTGGCACCATAAAGGACGGTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTGTCTGCCTCAGGTTTCAACTGTGGCACCATAAAGGACGGTATA  150

seq1  ACATAACAGATTTGGGGGCGGACATGCCCAGCCCATTACTGATGTTTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAACAGATTTGGGGGCGGACATGCCCAGCCCATTACTGATGTTTGAA  200

seq1  AGAATTGTATGAAACACAGTCTTGGAGTGCAGTGATTGCTCAGTGGTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTGTATGAAACACAGTCTTGGAGTGCAGTGATTGCTCAGTGGTCAG  250

seq1  AGTGCTTTCAGTGCCAGTGTGAGGACACAGTTAAGATTCTGAGAACCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTTCAGTGCCAGTGTGAGGACACAGTTAAGATTCTGAGAACCTAT  300

seq1  ATGCCAATGTTTTGTGGGTGTGTCAGACTGCCTGAAATATGCCTCTCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAATGTTTTGTGGGTGTGTCAGACTGCCTGAAATATGCCTCTCAAA  350

seq1  GACATTGGATCCCTAGAGAAAGCTGGGTAGGGAGACTTGCCAGATATGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTGGATCCCTAGAGAAAGCTGGGTAGGGAGACTTGCCAGATATGTG  400

seq1  AGGGCTGGGTGGATTGAGAGAATCTGCCTAAATGCATAAAGTGGAAGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGGGTGGATTGAGAGAATCTGCCTAAATGCATAAAGTGGAAGAAT  450

seq1  TATTGAGGAAAATTCCTGATATCAATATTAGGCATCCACCTACACCTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGGAAAATTCCTGATATCAATATTAGGCATCCACCTACACCTGTC  500

seq1  CACATACATACATACATGCATACACACACACACACACACACACAGACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACATACATACATGCATACACACACACACACACACACACAGACACA  550

seq1  CACACACACAGACACACACACACACACACACACAAACACACACACACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACAGACACACACACACACACACACACAAACACACACACACACA  600

seq1  CACACACACACACACACACACACACACACACACAGAGGAAATTTTACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACAGAGGAAATTTTACAAA  650

seq1  GAGGGAAATCACACATTTCTTTGCCTGATTAGGAACTAGACGCAGCCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAATCACACATTTCTTTGCCTGATTAGGAACTAGACGCAGCCATT  700

seq1  CTATCTGAGACAGTGAACAAAAGAAGAAATTGGTATGGAGACATCTCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGAGACAGTGAACAAAAGAAGAAATTGGTATGGAGACATCTCTGT  750

seq1  AGTAAATTCTTGCACTGATTTGAGCTTCCAAGTGATAGGGAATACGGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATTCTTGCACTGATTTGAGCTTCCAAGTGATAGGGAATACGGAAC  800

seq1  ATTTACATTGAGCAGTCTTGTGGCCCATGAGAGCATACTTTACATTCTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACATTGAGCAGTCTTGTGGCCCATGAGAGCATACTTTACATTCTAC  850

seq1  ACCCATACTTTGGTGATAGAGTTGTGGGCTGCACTGGAATTGCCTGACTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATACTTTGGTGATAGAGTTGTGGGCTGCACTGGAATTGCCTGACTG  900

seq1  CCCCACAGTTCACGCGCATGCTTTTTTTTTTTTTTTTTT--GACAACCAC  948
      |||||||||||||||||||||||||||||||||||||||  |||||||||
seq2  CCCCACAGTTCACGCGCATGCTTTTTTTTTTTTTTTTTTTGGACAACCAC  950

seq1  ATA--TTGGTCATGTT--AAAAAAAATCTTATGTAAAATAGAAAAGCATT  994
      |||  | |||||||||  |||||||||||||||| |||||||||   |||
seq2  ATAATTGGGTCATGTTAAAAAAAAAATCTTATGT-AAATAGAAAGCAATT  999

seq1  AGTGTGTGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  1044
      || ||| |||||||||||||||||||||||||| ||||||||||||||||
seq2  AGGGTGGGTTTCTCTCTCTCTCTCTCTCTCTCT-TCTCTCTCTCTCTCTC  1048


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