BAC Information

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BAC

Clone NameB6Ng01-236G23
Chromosome16 (Build37)
Map Location 66,600,201 - 66,708,618
singlet/doubletdoublet
Overlap geneCadm2
Upstream geneEG383186, Vgll3, LOC664846, LOC100039035
Downstream gene9330155M09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236G23.bB6Ng01-236G23.g
ACCGA047653GA047654
length1,2131,075
definitionB6Ng01-236G23.b B6Ng01-236G23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,707,387 - 66,708,618)(66,600,201 - 66,601,275)
sequence
gaattctcttatccactatgcaatctcccctaccccttaactgccacatt
tttttccttttccattttttattaggtatttagctcatttacatttccaa
tgctataccaaaagtcccccatacccacccaccaccactcccctacacac
ccactccccctttttggccctggcgttcccctgtactggggcatataaag
tttgcgtgtccaatgggcctctctttccagtgatggccgactaggccatc
ttttgatacatatgcagctagagtcaagagctccggggtactggttagtt
cataatgttgttccacctatagggttgcagatccctttagctccttgggt
tctttctctagctcctccattgggagccctgtgatccatccattagctga
ctgtgagcatccgccacattttaatagaggggatttcttccctagagaca
ttgagtggttacagaaattgaaatctgtgtgtttaatttggtaaagtaag
gtttatattgtcttcaatttaagtagtggaataatattttgtgattggca
tttgtaaattaatgctgagaagcaaactacaaaattacatgagaaaaata
aaaggattctaagcttgtgcttatccataaccctcatggaatataaaata
ctaacatatagaagcaaatccacacaaggaatatttgaattgtcaatatt
ctaatcagcataaaatctagtaatttattttaaatgttttccttgtgttt
acaaattgatgaataaaaattgcctagaaactggtacaaaattatatcaa
gggtcataagaaaaaccaatctccaaaatgtatcatcaaacaatgtaaga
gtttttaagttcttttgtaaggtctttctcaactgttccttcctttaggt
cccctttcttttagagaacatcttcactttggaactatggaaataagatt
tacaactcaatacttactttcttcctgtctctttatttggcctaaacttc
tgatttcaatatgtaaatagctgttggatcatttctgagggatgcttaaa
ggagacactttgcagccaagagaactacttggagtgatttgaatgagtgt
gcttggaaatgaagtgtcttcaatttataatataatgggctttgatggag
atggtaagaaactctttggaaagtctataactggtgatctcaggtcggac
actagattttgtg
gaattccatacatcatgtaagccaaggttccaagtctatggtttggactg
catgcctctagtttccacaactttatttttatttatatattttttgaaag
tttgttgattgcttatcaaaaacacatgtggtccagtgaagaaacaaaat
ttctaacttcaaacaaaaccctaaacatgacacaattctagacattggaa
caacaatttattcacagctatgcatattttgttgtctgtggactacagtt
tgagtccagaaagggtaaaagcactgtgttcccagcctcaaataaaccac
acccattgcagagattacttaaagctgtttcaagatgttaaataaataag
gactgtttttttttttttgaaagatcattgatttcttattaaaaacacat
gtgttcaagtgaagaaacaaatttctaacttgaaacaaaaccctaaacat
gacacagttctagatattaggacaaagaattacccacaggcatgaacata
ttgtggcctatggtctgcctgtgggacaaaacaggaaatgagaacaactg
tgttcacgtatgcaaaaagcagggtggggggacattttttgggaaatgtc
ctgtatatgctcagcccagagagggagtggcactatcagaaggtgtggcc
ctgttggagtgggtgtgtcattgtgggtttgggcttcaaaccctcatcct
agttgcctggaagccagtattctgctagcagccttcagatgaagatgtac
aactctcagcttctcctgtaccatgcctgcttggatgctgccatattccc
accttgatgacactggaatgaatctctgaacctgtaagcagccccagtta
aatgttgtcctttataagagttgcccttgggttatggtgtctgttcacag
aagtaaaaccctaactaagacaaggaagtgtgtacgttataaaagttaat
ttgtacagcaaatctttcagttggcttgctcattaattagatttatcagt
taaaggatcttattgagttttgatacctaaagttaaattattgcaaagaa
tgagagactcaactccttttactac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_66707387_66708618
seq2: B6Ng01-236G23.b_46_1258 (reverse)

seq1  CACAAAATCTTGTTGTCTTGGACCTGAGTATCCACCAAGTAAATTAAGAC  50
      |||||||||| | ||||   |||||||| || |||||  ||     ||||
seq2  CACAAAATCTAG-TGTC--CGACCTGAG-AT-CACCAGTTA----TAGAC  41

seq1  ATTCTCAAGAGTATCTTTACCATCTTCCATTCAAAGACCCATTATAATTA  100
       |||  |||||| || |||||||| |||| |||||| |||||||| ||||
seq2  TTTCCAAAGAGTTTC-TTACCATC-TCCA-TCAAAG-CCCATTAT-ATTA  86

seq1  TAATATTTTAAAAGAACAC-TCATTCTCAAGGCACTACTCCATTCAAATC  149
      ||| |||    ||| |||| ||||| || | |||| ||| ||||||||||
seq2  TAA-ATT---GAAG-ACACTTCATT-TCCAAGCAC-ACT-CATTCAAATC  128

seq1  ACTC--AGTAGTTCTCTTTGGCTGCAAAGTGTCTC--TTTAGCATCCCTC  195
      ||||  |||||||||| ||||||||||||||||||  || ||||||||||
seq2  ACTCCAAGTAGTTCTC-TTGGCTGCAAAGTGTCTCCTTTAAGCATCCCTC  177

seq1  AGAAATGATCCAACAGCTATTTACATATTTGAAATCAG-AGTTTAGGCCA  244
      ||||||||||||||||||||||||||| |||||||||| |||||||||||
seq2  AGAAATGATCCAACAGCTATTTACATA-TTGAAATCAGAAGTTTAGGCCA  226

seq1  AATAAAGAGACAGGAAGAAAGTAAGTATTTGAGTTGTAAATCTTATTTCC  294
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AATAAAGAGACAGGAAGAAAGTAAGTA-TTGAGTTGTAAATCTTATTTCC  275

seq1  ATAGTTCCAAAGTGAAGATGTTCTCTAAAAGAAAGGGGACCTAAAGGAAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCCAAAGTGAAGATGTTCTCTAAAAGAAAGGGGACCTAAAGGAAG  325

seq1  GAACAGTTGAGAAAGACCTTACAAAAGAACTTAAAAACTCTTACATTGTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTTGAGAAAGACCTTACAAAAGAACTTAAAAACTCTTACATTGTT  375

seq1  TGATGATACATTTTGGAGATTGGTTTTTCTTATGACCCTTGATATAATTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATACATTTTGGAGATTGGTTTTTCTTATGACCCTTGATATAATTT  425

seq1  TGTACCAGTTTCTAGGCAATTTTTATTCATCAATTTGTAAACACAAGGAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCAGTTTCTAGGCAATTTTTATTCATCAATTTGTAAACACAAGGAA  475

seq1  AACATTTAAAATAAATTACTAGATTTTATGCTGATTAGAATATTGACAAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTAAAATAAATTACTAGATTTTATGCTGATTAGAATATTGACAAT  525

seq1  TCAAATATTCCTTGTGTGGATTTGCTTCTATATGTTAGTATTTTATATTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATATTCCTTGTGTGGATTTGCTTCTATATGTTAGTATTTTATATTC  575

seq1  CATGAGGGTTATGGATAAGCACAAGCTTAGAATCCTTTTATTTTTCTCAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGGGTTATGGATAAGCACAAGCTTAGAATCCTTTTATTTTTCTCAT  625

seq1  GTAATTTTGTAGTTTGCTTCTCAGCATTAATTTACAAATGCCAATCACAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTTGTAGTTTGCTTCTCAGCATTAATTTACAAATGCCAATCACAA  675

seq1  AATATTATTCCACTACTTAAATTGAAGACAATATAAACCTTACTTTACCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTATTCCACTACTTAAATTGAAGACAATATAAACCTTACTTTACCA  725

seq1  AATTAAACACACAGATTTCAATTTCTGTAACCACTCAATGTCTCTAGGGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAACACACAGATTTCAATTTCTGTAACCACTCAATGTCTCTAGGGA  775

seq1  AGAAATCCCCTCTATTAAAATGTGGCGGATGCTCACAGTCAGCTAATGGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCCCCTCTATTAAAATGTGGCGGATGCTCACAGTCAGCTAATGGA  825

seq1  TGGATCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGAACCCAAGGAGCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGAACCCAAGGAGCT  875

seq1  AAAGGGATCTGCAACCCTATAGGTGGAACAACATTATGAACTAACCAGTA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGATCTGCAACCCTATAGGTGGAACAACATTATGAACTAACCAGTA  925

seq1  CCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTC  975

seq1  GGCCATCACTGGAAAGAGAGGCCCATTGGACACGCAAACTTTATATGCCC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATCACTGGAAAGAGAGGCCCATTGGACACGCAAACTTTATATGCCC  1025

seq1  CAGTACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGGTGTGTAGGGGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGGTGTGTAGGGGA  1075

seq1  GTGGTGGTGGGTGGGTATGGGGGACTTTTGGTATAGCATTGGAAATGTAA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGTGGGTGGGTATGGGGGACTTTTGGTATAGCATTGGAAATGTAA  1125

seq1  ATGAGCTAAATACCTAATAAAAAATGGAAAAGGAAAAAAATGTGGCAGTT  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCTAAATACCTAATAAAAAATGGAAAAGGAAAAAAATGTGGCAGTT  1175

seq1  AAGGGGTAGGGGAGATTGCATAGTGGATAAGAGAATTC  1232
      ||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGTAGGGGAGATTGCATAGTGGATAAGAGAATTC  1213

seq1: chr16_66600201_66601275
seq2: B6Ng01-236G23.g_66_1140

seq1  GAATTCCATACATCATGTAAGCCAAGGTTCCAAGTCTATGGTTTGGACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATACATCATGTAAGCCAAGGTTCCAAGTCTATGGTTTGGACTG  50

seq1  CATGCCTCTAGTTTCCACAACTTTATTTTTATTTATATATTTTTTGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTCTAGTTTCCACAACTTTATTTTTATTTATATATTTTTTGAAAG  100

seq1  TTTGTTGATTGCTTATCAAAAACACATGTGGTCCAGTGAAGAAACAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGATTGCTTATCAAAAACACATGTGGTCCAGTGAAGAAACAAAAT  150

seq1  TTCTAACTTCAAACAAAACCCTAAACATGACACAATTCTAGACATTGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACTTCAAACAAAACCCTAAACATGACACAATTCTAGACATTGGAA  200

seq1  CAACAATTTATTCACAGCTATGCATATTTTGTTGTCTGTGGACTACAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATTTATTCACAGCTATGCATATTTTGTTGTCTGTGGACTACAGTT  250

seq1  TGAGTCCAGAAAGGGTAAAAGCACTGTGTTCCCAGCCTCAAATAAACCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCCAGAAAGGGTAAAAGCACTGTGTTCCCAGCCTCAAATAAACCAC  300

seq1  ACCCATTGCAGAGATTACTTAAAGCTGTTTCAAGATGTTAAATAAATAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATTGCAGAGATTACTTAAAGCTGTTTCAAGATGTTAAATAAATAAG  350

seq1  GACTGTTTTTTTTTTTTTGAAAGATCATTGATTTCTTATTAAAAACACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTTTTTTTTTTTTGAAAGATCATTGATTTCTTATTAAAAACACAT  400

seq1  GTGTTCAAGTGAAGAAACAAATTTCTAACTTGAAACAAAACCCTAAACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCAAGTGAAGAAACAAATTTCTAACTTGAAACAAAACCCTAAACAT  450

seq1  GACACAGTTCTAGATATTAGGACAAAGAATTACCCACAGGCATGAACATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGTTCTAGATATTAGGACAAAGAATTACCCACAGGCATGAACATA  500

seq1  TTGTGGCCTATGGTCTGCCTGTGGGACAAAACAGGAAATGAGAACAACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGCCTATGGTCTGCCTGTGGGACAAAACAGGAAATGAGAACAACTG  550

seq1  TGTTCACGTATGCAAAAAGCAGGGTGGGGGGACATTTTTTGGGAAATGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACGTATGCAAAAAGCAGGGTGGGGGGACATTTTTTGGGAAATGTC  600

seq1  CTGTATATGCTCAGCCCAGAGAGGGAGTGGCACTATCAGAAGGTGTGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATATGCTCAGCCCAGAGAGGGAGTGGCACTATCAGAAGGTGTGGCC  650

seq1  CTGTTGGAGTGGGTGTGTCATTGTGGGTTTGGGCTTCAAACCCTCATCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGAGTGGGTGTGTCATTGTGGGTTTGGGCTTCAAACCCTCATCCT  700

seq1  AGTTGCCTGGAAGCCAGTATTCTGCTAGCAGCCTTCAGATGAAGATGTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCCTGGAAGCCAGTATTCTGCTAGCAGCCTTCAGATGAAGATGTAC  750

seq1  AACTCTCAGCTTCTCCTGTACCATGCCTGCTTGGATGCTGCCATATTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCAGCTTCTCCTGTACCATGCCTGCTTGGATGCTGCCATATTCCC  800

seq1  ACCTTGATGACACTGGAATGAATCTCTGAACCTGTAAGCAGCCCCAGTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGATGACACTGGAATGAATCTCTGAACCTGTAAGCAGCCCCAGTTA  850

seq1  AATGTTGTCC-TTATAAGAGTTGCC--TTGGTTATGGTGTCTGTTCACAG  897
      |||||||||| ||||||||||||||  | |||||||||||||||||||||
seq2  AATGTTGTCCTTTATAAGAGTTGCCCTTGGGTTATGGTGTCTGTTCACAG  900

seq1  AAGTAAAACCCTAACTAAGAC-AGGAAGTGTGTACGTTATAAAAGTTAAT  946
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAGTAAAACCCTAACTAAGACAAGGAAGTGTGTACGTTATAAAAGTTAAT  950

seq1  TTGTACAGCAAATC-TTCAGTTGGCTTGCTCATTAATTAAGAATTTTATC  995
      |||||||||||||| ||||||||||||||||||||||| |||  ||||||
seq2  TTGTACAGCAAATCTTTCAGTTGGCTTGCTCATTAATT-AGA--TTTATC  997

seq1  AG-TAAAGGATCT--ATGAGTTTTGATACCTAAAGTAAAATTATTGCAAA  1042
      || ||||||||||   |||||||||||||||||||| ||||||||||  |
seq2  AGTTAAAGGATCTTATTGAGTTTTGATACCTAAAGTTAAATTATTGC--A  1045

seq1  AAGAATGAGAAGACTCAACTCCTTTTTAACTAC  1075
      ||||||||| ||||||||||||||||  |||||
seq2  AAGAATGAG-AGACTCAACTCCTTTT--ACTAC  1075