BAC Information

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BAC

Clone NameB6Ng01-236J18
Chromosome16 (Build37)
Map Location 47,439,078 - 47,440,215
singlet/doubletsinglet
Overlap genenone
Upstream genePvrl3, LOC628757
Downstream geneLOC628776, EG667741, EG639644, EG637273, Dppa4, Dppa2, EG433023, Morc1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236J18.bB6Ng01-236J18.g
ACCGA047786GA047787
length1,1301,193
definitionB6Ng01-236J18.b B6Ng01-236J18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctggctaatattgcctattagaagaatctctgtcttccatagg
catgttaactttataacgacaatacttatgccttgactgggtctattgtg
gaatacatgcccttagagataagaagggtgcattctgtgcactgtagctg
gggattttagccaagatttttagagttggtctgcaagatacactgccatg
gttgacatagcatatcctggtcatatttttctttccattgagtaaattta
ttcagtctgatataccataatgaactctgcaatggtattcccattgtctt
gcaggtggttgatgaaacaattccaaactccatgatacttcctttcatct
ttaattaagacagacatgggaagtgttcatttgagaagttgaagaagcag
atatcaagatggaaaaagatgtgtaagatatttggggaggtctctgaaag
ttatcaatgaaagggaattgtagtgatttgtataagaatgaccaccaagg
gtttatatttgaatgcttcttgagtggcactatttgaaaagattaggagt
tgtggccttgttggaggcaatatgtcactatgggtgggctttgaggtttc
aaaagtccaaatcatgcccagtctctctttctttctgttgaccccaatac
ctggatgtagaactctcagttatttctccagaaccatgtctgtggactaa
atcactgtaactaaagaaagccccaagtaaatgctttattttatagtttg
agatggtcatttattttgcacaaaagtagcacactgactaaaacagaagt
tggtaccagggagcttccttctatgctgttaatagagtaaagttctgaaa
gtgtaagcaaacaccagttaaatgttttcctttgtaagagttgctattgt
cacagcaatagagcaatgactaagataggatgtacaatgactaggtgatc
acaccacagtgtaggtgtaaggactttgaaaggagtatggagagggaaaa
agaagcttttaacagagatctgtgcagcagcttaaagaaatttttctata
tcatagagtgtgagtactatcacttcatgagaggagttttatatctttag
aaaggcctatactcatagttacacatgatc
gaattcaacacaccactttcatcaatggacagatcctggaaacagaaact
aaacagggacacattgaaactaatagaagttatgaaacaaatggacttaa
cagatatctacagagcattttatcctaaaacaaaaggatacaccttcttc
tcagcacctcatggtactttctccaaaactgaccatataattggtcacaa
aacaggcctcaacagatacaaaaatattgaaattgtcccatgcatcctat
ctgaccaccatggactaaggctgatcgtccttaacaacataaataatgga
aagccaacattcacatggaaaatgaacaatactcttctcaatgatacctt
ggtcaaggaaggaataaagaaagaaattaaagactttttagagtttaatg
aaaatgaagctacaacatacccaaacttatgggagacaatgaaagcattt
ctatgaggaaaacttatagctctgagtgtctcccaaaagaaactagagag
agcacacactagcagcttgacaacacacctaaaatctctagaaaaaaaaa
aggaagcaaattcacccaagaggagtagatggcaggaaataatcaaaatc
aggggtgaaatcaaccaagtggaaacaagaactattcaaagaatcaacca
aaagaagagctggtttttgagaaaatcaacaagataaataaacccttagc
cagactcactagagagcacagggacagcatcctaattaacaaaatcagaa
atgaaaagggagacataacaacagatcctgaagaaatccaaaacaccatc
aaatccttctacaaaaggctatactcaacaaaactggaaaacctggtcga
aatggacaaatttctagacagatactaggtaccaaagttgaatcagatca
agtcaatgatctaaacagtcccatatcaactaaagaaataaaagcagtca
ttaatagtctcccaaccaaaaaaagcccagatcagatgggttagtgcaca
gttttatagacgtcaagaagatctaattccagttctgcacaactatccac
aaatagagtagaagtatttctacccacacatctatgagctacagttactc
tgatacttaaaccacgaaagatcacaagaatgagactcaactaatttccg
ttatggaatatcaatgacagaatatcctcaaataaaagttctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_47439078_47440215
seq2: B6Ng01-236J18.b_46_1175 (reverse)

seq1  GATCATGGTGTACTTATGAGTATAGCCCCTTTTCTAAAGATATAAAACTC  50
      |||||| |||||  ||||||||||| ||  ||||||||||||||||||||
seq2  GATCAT-GTGTAACTATGAGTATAGGCC--TTTCTAAAGATATAAAACTC  47

seq1  CTCTCATG-AGTGATAGTAACTCAACAACTTCCTATGGATATAG-AAAAT  98
      |||||||| ||||||||| |||||   |||  |||| ||||||| |||||
seq2  CTCTCATGAAGTGATAGT-ACTCA--CACT--CTAT-GATATAGAAAAAT  91

seq1  TTCTTTAAGCTGCTGCACAGATCTTCTG-TAAAAGCTTCCTTTTTCCCTC  147
      ||||||||||||||||||||||| |||| ||||||||| |||||||||||
seq2  TTCTTTAAGCTGCTGCACAGATC-TCTGTTAAAAGCTT-CTTTTTCCCTC  139

seq1  TCCATACTCCTTTCAAAGTCCTTACACCTACACTGTGGTGTGATCACCTA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATACTCCTTTCAAAGTCCTTACACCTACACTGTGGTGTGATCACCTA  189

seq1  GTCATTGTACATCCTATCTTAGTCATTGCTCTATTGCTGTGACAATAGCA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTGTACATCCTATCTTAGTCATTGCTCTATTGCTGTGACAATAGCA  239

seq1  ACTCTTACAAAGGAAAACATTTAACTGGTGTTTGCTTACACTTTCAGAAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTACAAAGGAAAACATTTAACTGGTGTTTGCTTACACTTTCAGAAC  289

seq1  TTTACTCTATTAACAGCATAGAAGGAAGCTCCCTGGTACCAACTTCTGTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCTATTAACAGCATAGAAGGAAGCTCCCTGGTACCAACTTCTGTT  339

seq1  TTAGTCAGTGTGCTACTTTTGTGCAAAATAAATGACCATCTCAAACTATA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCAGTGTGCTACTTTTGTGCAAAATAAATGACCATCTCAAACTATA  389

seq1  AAATAAAGCATTTACTTGGGGCTTTCTTTAGTTACAGTGATTTAGTCCAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGCATTTACTTGGGGCTTTCTTTAGTTACAGTGATTTAGTCCAC  439

seq1  AGACATGGTTCTGGAGAAATAACTGAGAGTTCTACATCCAGGTATTGGGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGGTTCTGGAGAAATAACTGAGAGTTCTACATCCAGGTATTGGGG  489

seq1  TCAACAGAAAGAAAGAGAGACTGGGCATGATTTGGACTTTTGAAACCTCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGAAAGAAAGAGAGACTGGGCATGATTTGGACTTTTGAAACCTCA  539

seq1  AAGCCCACCCATAGTGACATATTGCCTCCAACAAGGCCACAACTCCTAAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCACCCATAGTGACATATTGCCTCCAACAAGGCCACAACTCCTAAT  589

seq1  CTTTTCAAATAGTGCCACTCAAGAAGCATTCAAATATAAACCCTTGGTGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAAATAGTGCCACTCAAGAAGCATTCAAATATAAACCCTTGGTGG  639

seq1  TCATTCTTATACAAATCACTACAATTCCCTTTCATTGATAACTTTCAGAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTTATACAAATCACTACAATTCCCTTTCATTGATAACTTTCAGAG  689

seq1  ACCTCCCCAAATATCTTACACATCTTTTTCCATCTTGATATCTGCTTCTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCCAAATATCTTACACATCTTTTTCCATCTTGATATCTGCTTCTT  739

seq1  CAACTTCTCAAATGAACACTTCCCATGTCTGTCTTAATTAAAGATGAAAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCTCAAATGAACACTTCCCATGTCTGTCTTAATTAAAGATGAAAG  789

seq1  GAAGTATCATGGAGTTTGGAATTGTTTCATCAACCACCTGCAAGACAATG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTATCATGGAGTTTGGAATTGTTTCATCAACCACCTGCAAGACAATG  839

seq1  GGAATACCATTGCAGAGTTCATTATGGTATATCAGACTGAATAAATTTAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATACCATTGCAGAGTTCATTATGGTATATCAGACTGAATAAATTTAC  889

seq1  TCAATGGAAAGAAAAATATGACCAGGATATGCTATGTCAACCATGGCAGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGGAAAGAAAAATATGACCAGGATATGCTATGTCAACCATGGCAGT  939

seq1  GTATCTTGCAGACCAACTCTAAAAATCTTGGCTAAAATCCCCAGCTACAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTTGCAGACCAACTCTAAAAATCTTGGCTAAAATCCCCAGCTACAG  989

seq1  TGCACAGAATGCACCCTTCTTATCTCTAAGGGCATGTATTCCACAATAGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGAATGCACCCTTCTTATCTCTAAGGGCATGTATTCCACAATAGA  1039

seq1  CCCAGTCAAGGCATAAGTATTGTCGTTATAAAGTTAACATGCCTATGGAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTCAAGGCATAAGTATTGTCGTTATAAAGTTAACATGCCTATGGAA  1089

seq1  GACAGAGATTCTTCTAATAGGCAATATTAGCCAGAGAATTC  1138
      |||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGATTCTTCTAATAGGCAATATTAGCCAGAGAATTC  1130