BAC Information

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BAC

Clone NameB6Ng01-236O09
Chromosome16 (Build37)
Map Location 3,325,694 - 3,326,838
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042177, LOC100042915, LOC100042188, LOC100042251, LOC100042925
Downstream geneLOC100042270, LOC100042937, LOC100042283, Olfr161, Olfr162-ps1, Olfr163-ps1, LOC100042949, Mefv, EG620395, Zfp263, Olfr15, Zfp174, Zfp597, 1200013P24Rik, 1700037C18Rik, Cluap1, LOC664851, Nlrc3, Btbd12, Dnase1, Trap1, Crebbp, EG436332, Adcy9, EG620313
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236O09.bB6Ng01-236O09.g
ACCGA048002GA048003
length1,088695
definitionB6Ng01-236O09.b B6Ng01-236O09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactcggcttctagtgtagtgttttgtcacttacagggtcattag
gtagctcaggacttttttttttattaacatctttttgcatctttctcata
tgcagaccccttttcatatgagggttatgtatgcctcttaacaaaactct
ttacagtatgtgaatttttgcaaatgtttcaaattgagtgtggagaattc
ccagaaattgtaacataaagcaaaaagaaaaggataagaatgatctttta
aaacctcaacagtgatcacaactggacagagattttttttttaatctctt
gcttttttttttttaaaggaaagtgtcagaaaggggtgctaaccacatcc
tctaagccaagtcatttccctctcctaccagataccacacacacacacac
acacacacacacacacacacatattttcatgcttgggttcatctacctcc
acagttagccttctctcaagcccttctttgcagctcatcatcttgaaagt
cagcaagggcattctaaatcagtcccatgctttgaatttctctgacctct
ctccatgtgttaccagccataaagaatgctctgcttttaaagaaatgtaa
tgaggctgaacctagttgtatgacctcccttttgattatctcaacatcaa
gtcattattatttttaaacacatcttcaaaacttcccttggcaataacat
aatattatcatgggttgaaaatatgataaaaattcaagacctaagttgta
gctgtccagcagccacagagaactgggtatacctgaaagggaggctggga
atgaaataggacgggtgggccagagaggaatgaagtcaagagaaagattt
ctgatcaaggttcaaaatttaatttttgccgggcatggtggcaacaccca
gcacttaagagtctgaggcagtgaatttctgagtcgaggtcagcctggtc
tacagagtgagtccaggacagtcagtctacacagagaaatcctgtcttgc
aaaacaaacaacaacaaccaatcaatcaaaccaaaacaacacacgactac
acacaaaaaaacaaacaagtttattttcagcttgcatt
gaattctctgaactcactgtcctttcaggtccacatttgctctggctctg
gcaactgactgaaccaaacaattaggctcatacctagaactttggaaatg
gtaatggagttgataacacaccctaacagaaagaggaaggctccactcac
tagtacactttcactagaagcctcgccctgtcagcagtttaggaatttgt
aaagccaatctggacaatatttaaatggtttggaatttctacttcatgtt
taatttttttttttttttttttttttttgagacagggtttctctgtatag
ccctggctgtcctggaactcactttgtagaccaggctggcctcgaactca
gaaatacgcctgcctctgcctcccgagtgctgtgattaaaggcgtgcacc
accacgccaggccccatgtttaatgtttagtaaacatttaataaacattt
aataaacattgtgaaggtctgaagaaatggatcagcagttaagagcattg
acttttcttgcagaggtcctgagttcaattcccaggaatcacatggtgcc
tttggaatccgatgcacactttttggtgtgtgttggaagacagctgcagt
gtactcatataaataaaaaataaataaaacattcaaaaataaagtaaaac
aaagattgtgatgaaattgagcattttaattttattttattgtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_3325694_3326838
seq2: B6Ng01-236O09.b_47_1134 (reverse)

seq1  AATGCAAAGCTGAAAATTAAACTTTGTTTTTGTTTTTGTTTTTGTTTTTT  50
      ||||| |||||||||| ||||||               | ||||||||||
seq2  AATGC-AAGCTGAAAA-TAAACT---------------TGTTTGTTTTTT  33

seq1  TAATTTTATTTATTTATTTATTTGTTTATTTGTTTGTTTGTTTGTTGTTG  100
      |   | || |  | | ||  ||||    |||| ||| ||| |||||||||
seq2  TGTGTGTAGTCGTGTGTTGTTTTG---GTTTGATTGATTGGTTGTTGTTG  80

seq1  TTGTTTTTGCAAGACAGAGTTTCTCTGTGAAGACCTGACTGTCCTGGAAC  150
      ||  |||||||||||||  |||||||||| ||| ||||||||||||| ||
seq2  TTTGTTTTGCAAGACAGGATTTCTCTGTGTAGA-CTGACTGTCCTGG-AC  128

seq1  TCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATTCACCTGCCTCTG  200
      |||||||||||||||||||| ||||| ||||||||||||| ||||||| |
seq2  TCACTCTGTAGACCAGGCTGACCTCG-ACTCAGAAATTCA-CTGCCTCAG  176

seq1  ACTCTTAAGTGCTGGGTGTTGCCACCATGCCCAGCAAAAATTAAATTTTG  250
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACTCTTAAGTGCTGGGTGTTGCCACCATGCCCGGCAAAAATTAAATTTTG  226

seq1  AACCTTGATCAGAAATCTTTGCCTTGATTTCATTCCTCTCTTGCCCACCC  300
      ||||||||||||||||||||  ||||| ||||||||||||| ||||||||
seq2  AACCTTGATCAGAAATCTTTCTCTTGACTTCATTCCTCTCTGGCCCACCC  276

seq1  GTCCTATTTCATTCCCAGCCTCCCTTTCAGGTGTACCCACTTCTCTGTGG  350
      |||||||||||||||||||||||||||||||| |||||| ||||||||||
seq2  GTCCTATTTCATTCCCAGCCTCCCTTTCAGGTATACCCAGTTCTCTGTGG  326

seq1  CTGCTGGACAGCTACAACTTAGGTCTTGAATTTTTATCATATTTTCAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGACAGCTACAACTTAGGTCTTGAATTTTTATCATATTTTCAACC  376

seq1  CATGATAATATTATGTTATTACCAAGGGAAGTTTTGAAGATATGTTTAAA  450
      |||||||||||||||||||| |||||||||||||||||||| ||||||||
seq2  CATGATAATATTATGTTATTGCCAAGGGAAGTTTTGAAGATGTGTTTAAA  426

seq1  AATAATAATGACTTGATGTTGAGATAATCAAAAGGGAGGTCATACAACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAATGACTTGATGTTGAGATAATCAAAAGGGAGGTCATACAACTA  476

seq1  GGCTCAGCCTCATTACATTTCTTTAAAAGCAGAACATTCTTTATGGCTGG  550
      || |||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGTTCAGCCTCATTACATTTCTTTAAAAGCAGAGCATTCTTTATGGCTGG  526

seq1  TA----ATGGAGAGAGGTCAGAGAAATTTAAAGCATGGGACTGATTTAGA  596
      ||    |||||||||||||||||||||| |||||||||||||||||||||
seq2  TAACACATGGAGAGAGGTCAGAGAAATTCAAAGCATGGGACTGATTTAGA  576

seq1  ATGCCCTTGCTGACTTTCAAGATGATGAGCTGCAAAGAAGGGCTTGAGAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTTGCTGACTTTCAAGATGATGAGCTGCAAAGAAGGGCTTGAGAG  626

seq1  AAGGCTAACTGTGGATGAAGATGAACCCAAGCAGGAAAATATATATGTGT  696
      ||||||||||||||| | ||||||||||||||| |||||||        |
seq2  AAGGCTAACTGTGGAGGTAGATGAACCCAAGCATGAAAATA--------T  668

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTATCTGGTAGGAGA  746
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTATCTGGTAGGAGA  718

seq1  GGGAAATGACTTGGCTTAGAGGATGCGGTTAGCACCCCTTTCTGACACTT  796
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGGAAATGACTTGGCTTAGAGGATGTGGTTAGCACCCCTTTCTGACACTT  768

seq1  TCATGCGAGATGTGATGCCTCCTTAAAAAATAAAAATAAAAAAAGCAAGG  846
                         ||||| |||||       |||||||||||| 
seq2  -------------------TCCTTTAAAAA-------AAAAAAAGCAAGA  792

seq1  GATT--AAAAAAAATATCTGTCTAGTTGTGATCACTGTTGAGGTTTTAAA  894
      ||||  ||||||||| |||||| |||||||||||||||||||||||||||
seq2  GATTAAAAAAAAAATCTCTGTCCAGTTGTGATCACTGTTGAGGTTTTAAA  842

seq1  AGATCATCCTTATCCTTTTTTTTTTTTTTTGCTTTACGTTACAATTTCTG  944
      ||||||| |||||||     |||| ||||||||||| |||||||||||||
seq2  AGATCATTCTTATCC-----TTTTCTTTTTGCTTTATGTTACAATTTCTG  887

seq1  GGAATTCTCCACACTCAATTTGAAACATTTGCGAAAATTCACATGCTGTA  994
      |||||||||||||||||||||||||||||||| ||||||||||| |||||
seq2  GGAATTCTCCACACTCAATTTGAAACATTTGCAAAAATTCACATACTGTA  937

seq1  AAGAGTTTTGTTAAGAGGCATACATAACCCTCATTTGCAAAGGG----GC  1040
      |||||||||||||||||||||||||||||||||| || ||||||    ||
seq2  AAGAGTTTTGTTAAGAGGCATACATAACCCTCATATGAAAAGGGGTCTGC  987

seq1  CTATGAGAAAGATGCAAAAAGATGTTAATAATAATAAAAAAAAGTCCTGA  1090
       ||||||||||||||||||||||||||||||    |||||||||||||||
seq2  ATATGAGAAAGATGCAAAAAGATGTTAATAA----AAAAAAAAGTCCTGA  1033

seq1  GCCACCTAATGACCCTGTAAGTGCCAAAACACTACACTAGAAGCCGAGTA  1140
      || |||||||||||||||||||| ||||||||||||||||||||||||| 
seq2  GCTACCTAATGACCCTGTAAGTGACAAAACACTACACTAGAAGCCGAGTG  1083

seq1  AATTC  1145
      |||||
seq2  AATTC  1088