BAC Information

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BAC

Clone NameB6Ng01-237F19
Chromosome16 (Build37)
Map Location 66,500,163 - 66,637,728
singlet/doubletdoublet
Overlap genenone
Upstream genePou1f1, Chmp2b, EG383186, Vgll3, LOC664846, LOC100039035
Downstream geneCadm2, 9330155M09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237F19.bB6Ng01-237F19.g
ACCGA048341GA048342
length590985
definitionB6Ng01-237F19.b B6Ng01-237F19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,500,163 - 66,500,760)(66,637,211 - 66,637,728)
sequence
gaattctaggtccagacaaggcatgaacatcaattcatcagaaacgcgaa
tgtatgcctctcctactcaggtaagtgcttcttttcttcttcttcttctt
cttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttct
tcttcttcttcttcttcttcttcttcttcttcttcttcttctcttcttct
tcttcttcagtttatttttaattagtttttattttttattagatattttc
tttatttacatttcaaatgctatcccaaaagttccctgtaccctcccccc
accctgctcccctaccaacccactcccacagggcccccaatggaggagct
atagaaaaagtacccaaggagttgaagggatctgcaaccctataggagaa
acaacaatatgaactaaccagtacccccccagagctcgtgtctctagggg
catatgtatcagaagatggcctagtcagccatcactgtgaagagagacct
cttggtctgcaaactttatatgtccaggtagtgcatcttgagtctttgga
cttcatgcaattcatgtgtgtgtgattagcgtgtgattaa

gaattcagtctttgaactgaagtatcaattcatattcaatgcttctgaaa
gatagactgaaatttcactattacctttcacaaattttgaaaacataaac
aaggggtggggtcataatctcttatcctcattaagaattttccatccaca
cttttaaataaagaaacagctatattatttgtttataaatagcattaatg
tacaaagtatagctttgtttctaaaactccctatgctatgtatgtctcta
ccttgaattcctttgaaatactaccatgcaacctccaacgataggccatg
tactccagaattcaacactattatgacttttccaatgtgtacttttgaga
attccggggtttttatctgttaataattataaataaatctgttataaata
attttagtcacataataaaactacaaatggtttcacttatattaaaatat
cctttcaagtagaaaaactatatatatatatatatatatatatatatata
tatatacacacacatataattttattcttttacttactcaattacatccc
actcactgccccctcgcagtcccaaaatccttccccaatggcccgctccc
cttctaatctcagcaggtgaccctaacaccctagagagccccaacccctg
ccacttcaagtatttaagtgttctcaagcaccctaggctgcaggtggtgg
tctgactggctgcaaatggtggtctatttaggttccatatcatcaatgta
gtgagtcacatctaagatcacccccattgattcttgggtgccttccttat
cccaggtttctgtcttgtcctggagatgccctatctcctcattcttgttc
atttgcagattttcattcatttttcatggtcatctcgccatctcttctgt
tcctgaatccatcattcaccttgtcagcatcccctcctttccagttccca
ccctccatcttcatcttatgactattttattcccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_66500163_66500760
seq2: B6Ng01-237F19.b_45_634

seq1  GAATTCTAGGTCCAGACAAGGCATGAACATCAATTCATCAGAAACGCGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGTCCAGACAAGGCATGAACATCAATTCATCAGAAACGCGAA  50

seq1  TGTATGCCTCTCCTACTCAGGTAAGTGCTTCTTTTCTTCTTCTTCTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCCTCTCCTACTCAGGTAAGTGCTTCTTTTCTTCTTCTTCTTCTT  100

seq1  CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT  150

seq1  TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTTCTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTTCTTCT  200

seq1  TCTTCTTCAGTTTATTTTTAATTAGTTTTTATTTTTTATTAGATATTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCAGTTTATTTTTAATTAGTTTTTATTTTTTATTAGATATTTTC  250

seq1  TTTATTTACATTTCAAATGCTATCCCAAAAGTTCCCTGTACCCTCCCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTACATTTCAAATGCTATCCCAAAAGTTCCCTGTACCCTCCCCCC  300

seq1  ACCCTGCTCCCCTACCAACCCACTCCCACAGGGCCCCCAATGGAGGAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGCTCCCCTACCAACCCACTCCCACAGGGCCCCCAATGGAGGAGCT  350

seq1  ATAGAAAAAGTACCCAAGGAGTTGAAGGGATCTGCAACCCTATAGGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAAAGTACCCAAGGAGTTGAAGGGATCTGCAACCCTATAGGAGAA  400

seq1  ACAACAATATGAACTAACCAGTACCCCCCCAGAGCTCGTGTCTCTAGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAATATGAACTAACCAGTACCCCCCCAGAGCTCGTGTCTCTAGGGG  450

seq1  CATATGTATCAGAAGATGGCCTAGTCAGCCATCACTGTGAAGAGAGACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CATATGTATCAGAAGATGGCCTAGTCAGCCATCACTGTGAAGAGAGACCT  500

seq1  CTTGGTCTTGCAAACTTTATATGTCCCAGGTAAGTGCATCTTGAGTCTTG  550
      ||||||| |||||||||||||||| |||||| ||||||||||||||||| 
seq2  CTTGGTC-TGCAAACTTTATATGT-CCAGGT-AGTGCATCTTGAGTCTTT  547

seq1  GGAACTTTCAAATGCAAATTCATGTGTGTGTGATTAGTGTGTGATTAA  598
      || ||||    |||| ||||||||||||||||||||| ||||||||||
seq2  GG-ACTT---CATGC-AATTCATGTGTGTGTGATTAGCGTGTGATTAA  590


seq1: chr16_66637211_66637728
seq2: B6Ng01-237F19.g_69_586 (reverse)

seq1  TATATGTGTGTGTATATATATATATATATATATATATATATATATATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTGTGTGTATATATATATATATATATATATATATATATATATATA  50

seq1  GTTTTTCTACTTGAAAGGATATTTTAATATAAGTGAAACCATTTGTAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCTACTTGAAAGGATATTTTAATATAAGTGAAACCATTTGTAGTT  100

seq1  TTATTATGTGACTAAAATTATTTATAACAGATTTATTTATAATTATTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATGTGACTAAAATTATTTATAACAGATTTATTTATAATTATTAAC  150

seq1  AGATAAAAACCCCGGAATTCTCAAAAGTACACATTGGAAAAGTCATAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAAACCCCGGAATTCTCAAAAGTACACATTGGAAAAGTCATAATA  200

seq1  GTGTTGAATTCTGGAGTACATGGCCTATCGTTGGAGGTTGCATGGTAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGAATTCTGGAGTACATGGCCTATCGTTGGAGGTTGCATGGTAGTA  250

seq1  TTTCAAAGGAATTCAAGGTAGAGACATACATAGCATAGGGAGTTTTAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAGGAATTCAAGGTAGAGACATACATAGCATAGGGAGTTTTAGAA  300

seq1  ACAAAGCTATACTTTGTACATTAATGCTATTTATAAACAAATAATATAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCTATACTTTGTACATTAATGCTATTTATAAACAAATAATATAGC  350

seq1  TGTTTCTTTATTTAAAAGTGTGGATGGAAAATTCTTAATGAGGATAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTTATTTAAAAGTGTGGATGGAAAATTCTTAATGAGGATAAGAG  400

seq1  ATTATGACCCCACCCCTTGTTTATGTTTTCAAAATTTGTGAAAGGTAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGACCCCACCCCTTGTTTATGTTTTCAAAATTTGTGAAAGGTAATA  450

seq1  GTGAAATTTCAGTCTATCTTTCAGAAGCATTGAATATGAATTGATACTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATTTCAGTCTATCTTTCAGAAGCATTGAATATGAATTGATACTTC  500

seq1  AGTTCAAAGACTGAATTC  518
      ||||||||||||||||||
seq2  AGTTCAAAGACTGAATTC  518


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