BAC Information

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BAC

Clone NameB6Ng01-237G16
Chromosome16 (Build37)
Map Location 19,980,237 - 19,981,440
singlet/doubletsinglet
Overlap geneKlhl6
Upstream geneIgl, Igl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1, Igl-C4, Igl-J4, Igl-C2, Igl-J2, Igl-V3, Igl-V2, Olfr164, Olfr165, Olfr166, Olfr167, Olfr168, Olfr169, Olfr170, Olfr171, LOC100043444, Lamp3, B3gnt5, LOC100042935, A930003A15Rik
Downstream geneLOC100042938, Klhl24, Yeats2, LOC100043459, Map6d1, Parl, EG224044, Abcc5, Eif2b5, Dvl3, Ap2m1, LOC100042948, Abcf3, BC052055, EG328644, Alg3, 1810009K13Rik, Camk2n2, Ece2, Psmd2, LOC100043475, Eif4g1, 2900046G09Rik, Clcn2, Polr2h, Thpo, Chrd, LOC666255, LOC671504, EG666274, EG625060
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237G16.bB6Ng01-237G16.g
ACCGA048379GA048380
length1,1851,179
definitionB6Ng01-237G16.b B6Ng01-237G16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaacaacagagttagacagttgtatgtaaagaactcccatatgt
tgacaaggccagaggcagagcctatgtgaattgagggaagtcatgactgc
tttctaccacaaacaacggtcactggtttcgctttgcactggcatgatag
aggtgacagatgcccccttttcagatgtggaaatgaaaactgcacattac
ttacctggccattgcaggagcaaggattccacacattctaagagtctttg
ttttaactgacgtatgagttgccactaagtatggagcatcattctatctg
cagcctatcttggtaaaatataagcatggtcataaaaatgggttgacaca
aacacactgcttaacctgcccctgtactggccactagatttcccattcag
gagggaatgaaagtcaatttgtctcagtgccctgggtattccttttcagt
ttattctttatgttttgagtcactgagaaattgctatcattggttggtag
tttcatagatgtgtttgcttgcttagaagacaggactattggctggcttc
ccctgagacatcaatttttttctggttcttgggcttctcctcataaacag
aaggtgctttagttcagatatgtccttgccagtgcagaaaacactctgtt
ggtcctcaaggccagtatggcagtaagaagctggaacacacacaggtgta
agtgtctgcctgtggatgtagactttcttaacctttcttttgatttacat
ctaggtatttccaatgtagttttcatcctataatggatacaggtctggct
ataggactctgttttctgttcattgagcaactgtgtggaataggctttgt
atcacatgcacttagcccatttaatgtgtacaaaattttgtgttcaacaa
ttttgtgcataatatattgtgcttgtcttacacatggtgggggctgaagt
ctagtgccagttaattaaaaaaaaaaaatagtcacttgatcctaggacca
gatcagcattgggtctgacagtgactcactgcttctttgctttgtttcta
agtttgaggggtgaaacatctgtttaaagttcggacacctcactgagaac
aaattagcactctgttatatggtacgagccaggcacacttgccataactg
catggcttgtctataatattggagctgtttaactc
gaattcacagagatctacctgcttctacctcccaagtgctgcgattaaag
gcatgcctcaccacacctggtgtaaacatccttttatttgaggttaccag
taccatccatatctagggtgtggcttctcaattcaaatagcctatcaaaa
aaaaaattgcagcttacttcttaaacgaattctgagccagtcaagctgag
aagcaagaaaaccatcacacagagggaagtagcagaaaacatgtaataga
aagcagagggaaggagaacactaaaaatgaaaaggtttaagtcaagacaa
gggcaggggcttgggaagagatggagtgtgaaagagagcaaaccaaaact
aaggacaaataaaagaagacatacagaggcccactatataatctaatttt
aaaatgcaattttttaaaaaagtaacttgaatagaggtaccctgaatagg
tggataatgatattcccagaaaataccaagtggaaattgtagtgtcaaga
gtgggacatctccctatgagttgttggtcctatgggcctacgaggccccc
aaacgaacatagtctattcccattgtttttagttgcctaccagaatagta
tggtgagagcctatcgatggaaacaatccacattttggtctcatgacaga
gaaatcaaactggaacagagatggaaacagagatggaagcttctttccta
caagctagcattcatagtgctggaagatgctctgcagtctttaagggaag
aaaacacaccaacagtcctgctcagctgtcaatcctgtgtgtaccataac
tgatctgccaagcaagttgtgtccactggtgcaattggatttaaggcctt
ttttgatgggagagtactcctattgtaaatctactcaaaacccatagttg
gggagatcacaggctctaataagaaaccaacagtattgcttatttaaatg
tacaagttgtgaagctgtttctaaatatttgcaattatacctatagatag
tggtggcactcagtcagaaaaccttctctttgcaaccttttggcagaggg
atgtggtcctgcagtcatgagcctcactgcattctgtgatacttcacagg
acgtggaacaaagaattgagcttgacattccagagatactatcaatggct
gttactctttagagatcctctaaagtgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_19980237_19981440
seq2: B6Ng01-237G16.b_46_1230 (reverse)

seq1  GAGTTAAACAACTCCCATATATTTATTGACAAGGCCATGGGCAGAGTTTG  50
      |||||||||| |||| |||   |||| ||||| |||||  ||||   || 
seq2  GAGTTAAACAGCTCCAATA---TTATAGACAA-GCCAT--GCAG---TTA  41

seq1  AGGCAAGTGGTGCCT-GCTCTGTACCATAT-ACAGAGGTTGCTAATTTTG  98
       ||||||| |||||| |||| ||||||||| ||||||  |||||| ||||
seq2  TGGCAAGT-GTGCCTGGCTC-GTACCATATAACAGAG--TGCTAA-TTTG  86

seq1  TTCTTCAGT--GGTGTCACGACTTT-AACAGATGTCTCACCCCTTCCAAA  145
      ||| |||||  ||||||   ||||| ||||||||| ||||||||  ||||
seq2  TTC-TCAGTGAGGTGTCCGAACTTTAAACAGATGTTTCACCCCT--CAAA  133

seq1  ACCTTAGAAACAAAGCAAAGAGGCAGTGAGTCACTGTCAGACCCAATGCT  195
        ||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  --CTTAGAAACAAAGCAAAGAAGCAGTGAGTCACTGTCAGACCCAATGCT  181

seq1  GATCCTTGGTCTTAGGATTCAAGTTGACTA-TTTTTTTTTTTAATTAACT  244
      ||||  ||||| ||||| ||||| |||||| |||||||||||||||||||
seq2  GATC--TGGTCCTAGGA-TCAAG-TGACTATTTTTTTTTTTTAATTAACT  227

seq1  GGCACCTAGACTTCAGCCCCCACCATGTGTAAGACAAGCACAATATTATT  294
      |||| |||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGCA-CTAGACTTCAGCCCCCACCATGTGTAAGACAAGCACAATA-TATT  275

seq1  ATGCACAAAATTGTTGAACACAAAATTTTGTACACATTAAATGGGCTAAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACAAAATTGTTGAACACAAAATTTTGTACACATTAAATGGGCTAAG  325

seq1  TGCATGTGATACAAAGCCTATTCCACACAGTTGCTCAATGAACAGAAAAC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTGATACAAAGCCTATTCCACACAGTTGCTCAATGAACAGAAAAC  375

seq1  AGAGTCCTATAGCCAGACCTGTATCCATTATAGGATGAAAACTACATTGG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCCTATAGCCAGACCTGTATCCATTATAGGATGAAAACTACATTGG  425

seq1  AAATACCTAGATGTAAATCAAAAGAAAGGTTAAGAAAGTCTACATCCACA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCTAGATGTAAATCAAAAGAAAGGTTAAGAAAGTCTACATCCACA  475

seq1  GGCAGACACTTACACCTGTGTGTGTTCCAGCTTCTTACTGCCATACTGGC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGACACTTACACCTGTGTGTGTTCCAGCTTCTTACTGCCATACTGGC  525

seq1  CTTGAGGACCAACAGAGTGTTTTCTGCACTGGCAAGGACATATCTGAACT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGGACCAACAGAGTGTTTTCTGCACTGGCAAGGACATATCTGAACT  575

seq1  AAAGCACCTTCTGTTTATGAGGAGAAGCCCAAGAACCAGAAAAAAATTGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACCTTCTGTTTATGAGGAGAAGCCCAAGAACCAGAAAAAAATTGA  625

seq1  TGTCTCAGGGGAAGCCAGCCAATAGTCCTGTCTTCTAAGCAAGCAAACAC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAGGGGAAGCCAGCCAATAGTCCTGTCTTCTAAGCAAGCAAACAC  675

seq1  ATCTATGAAACTACCAACCAATGATAGCAATTTCTCAGTGACTCAAAACA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATGAAACTACCAACCAATGATAGCAATTTCTCAGTGACTCAAAACA  725

seq1  TAAAGAATAAACTGAAAAGGAATACCCAGGGCACTGAGACAAATTGACTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAATAAACTGAAAAGGAATACCCAGGGCACTGAGACAAATTGACTT  775

seq1  TCATTCCCTCCTGAATGGGAAATCTAGTGGCCAGTACAGGGGCAGGTTAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCCTCCTGAATGGGAAATCTAGTGGCCAGTACAGGGGCAGGTTAA  825

seq1  GCAGTGTGTTTGTGTCAACCCATTTTTATGACCATGCTTATATTTTACCA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTGTTTGTGTCAACCCATTTTTATGACCATGCTTATATTTTACCA  875

seq1  AGATAGGCTGCAGATAGAATGATGCTCCATACTTAGTGGCAACTCATACG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGGCTGCAGATAGAATGATGCTCCATACTTAGTGGCAACTCATACG  925

seq1  TCAGTTAAAACAAAGACTCTTAGAATGTGTGGAATCCTTGCTCCTGCAAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTAAAACAAAGACTCTTAGAATGTGTGGAATCCTTGCTCCTGCAAT  975

seq1  GGCCAGGTAAGTAATGTGCAGTTTTCATTTCCACATCTGAAAAGGGGGCA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGTAAGTAATGTGCAGTTTTCATTTCCACATCTGAAAAGGGGGCA  1025

seq1  TCTGTCACCTCTATCATGCCAGTGCAAAGCGAAACCAGTGACCGTTGTTT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCACCTCTATCATGCCAGTGCAAAGCGAAACCAGTGACCGTTGTTT  1075

seq1  GTGGTAGAAAGCAGTCATGACTTCCCTCAATTCACATAGGCTCTGCCTCT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAGAAAGCAGTCATGACTTCCCTCAATTCACATAGGCTCTGCCTCT  1125

seq1  GGCCTTGTCAACATATGGGAGTTCTTTACATACAACTGTCTAACTCTGTT  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGTCAACATATGGGAGTTCTTTACATACAACTGTCTAACTCTGTT  1175

seq1  GTTTGAATTC  1204
      ||||||||||
seq2  GTTTGAATTC  1185