BAC Information

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BAC

Clone NameB6Ng01-238C05
Chromosome16 (Build37)
Map Location 63,124,996 - 63,126,113
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1
Downstream geneEpha3, LOC100043540
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238C05.bB6Ng01-238C05.g
ACCGA048912GA048913
length1,1141,179
definitionB6Ng01-238C05.b B6Ng01-238C05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcttcagtgtgcttttttcttcaaagtccttctaatatacaaac
atttccagtccccttggtggtggagtgtaagctcactgtcagtatattga
tcgcaaggttaaaatgcttctatttttataaattttgtgtattttttcct
ccaattttttattaggcatttacttcatttacatttcaaatgctatcccg
aaagtcctctatctcccccccccccccgcctacctccctacccacccact
cccacttcttggccctggtatttcccctgtactggggcatatacagtttg
caagaccaaggggcctctcttcccaatgatggccgactaggccatcttct
gctacatatgcagctagagacacgagctctggggggtactggttagttca
tattgttgttccacctatagggttgcagacccctttagctccttgggtac
tctctctagctcctccactgggggccatgtgttccatccaatagctgact
gtgagcatccacttctgtgtttgctaggcactagcttagcctcacaagag
acagctatatcagggttccttcagcaaaatcttgctggcatatgcaatag
tgtctgcatttggtggctgattatgagatggacctccaggtgcggcaagt
gtctggatagtccatcctttcgtctcagctccaaactttgtctctgtaac
tccttccatgggtgtttagttcccaattctaagaagtggcgaattgtcca
cactttgctcttcctccttcttgagtttcatgtgttttgcaagttgtatc
ttgggtattctacgtttctgggctgaaactctgttgggatatttttgtat
tcctaagtgcttaattaaatgcttgggtatctgcatttgtacatatgcac
acacctgcccccacacacacccatgcacatacacacagacctcccactgt
ctatagcagctaagatatgtttaaaataattgcactttgaaactcaaggt
ctgttcactcctttcattattggaagaacctggtaatagcagaatgtaga
ccaatgaaccagttcctccatggacatactctaggaagagacagggcttg
cgacggatcagtgc
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtttggagctgagatga
aaggatggaccacgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatatactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacaggctcccaa
tggaggagctagagaaagtatccaagagctaaagggatcttcaccctata
ggtggaaaaacatatgactaccagtacccctgagctcttgactctagctg
caatatgtatcaaagaatgcttagtcgcatcactggcagaagagtcaatt
gaaccgcagacttggtgtgtcggtacagggaatccaaggtcaatggggag
aatgcgtgtggactaagtcgcatactcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_63124996_63126113
seq2: B6Ng01-238C05.b_43_1156

seq1  GAATTCTCTTCAGTGTGCTTTTTTCTTCAAAGTCCTTCTAATATACAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCAGTGTGCTTTTTTCTTCAAAGTCCTTCTAATATACAAAC  50

seq1  ATTTCCAGTCCCCTTGGTGGTGGAGTGTAAGCTCACTGTCAGTATATTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAGTCCCCTTGGTGGTGGAGTGTAAGCTCACTGTCAGTATATTGA  100

seq1  TCGCAAGGTTAAAATGCTTCTATTTTTATAAATTTTGTGTATTTTTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCAAGGTTAAAATGCTTCTATTTTTATAAATTTTGTGTATTTTTTCCT  150

seq1  CCAATTTTTTATTAGGCATTTACTTCATTTACATTTCAAATGCTATCCCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTTTTATTAGGCATTTACTTCATTTACATTTCAAATGCTATCCCG  200

seq1  AAAGTCCTCTATCTCCCCCCCCCCCCCGCCTACCTCCCTACCCACCCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCTCTATCTCCCCCCCCCCCCCGCCTACCTCCCTACCCACCCACT  250

seq1  CCCACTTCTTGGCCCTGGTATTTCCCCTGTACTGGGGCATATACAGTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTCTTGGCCCTGGTATTTCCCCTGTACTGGGGCATATACAGTTTG  300

seq1  CAAGACCAAGGGGCCTCTCTTCCCAATGATGGCCGACTAGGCCATCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACCAAGGGGCCTCTCTTCCCAATGATGGCCGACTAGGCCATCTTCT  350

seq1  GCTACATATGCAGCTAGAGACACGAGCTCTGGGGGGTACTGGTTAGTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATATGCAGCTAGAGACACGAGCTCTGGGGGGTACTGGTTAGTTCA  400

seq1  TATTGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGGTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGGTAC  450

seq1  TCTCTCTAGCTCCTCCACTGGGGGCCATGTGTTCCATCCAATAGCTGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTAGCTCCTCCACTGGGGGCCATGTGTTCCATCCAATAGCTGACT  500

seq1  GTGAGCATCCACTTCTGTGTTTGCTAGGCACTAGCTTAGCCTCACAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCATCCACTTCTGTGTTTGCTAGGCACTAGCTTAGCCTCACAAGAG  550

seq1  ACAGCTATATCAGGGTTCCTTCAGCAAAATCTTGCTGGCATATGCAATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTATATCAGGGTTCCTTCAGCAAAATCTTGCTGGCATATGCAATAG  600

seq1  TGTCTGCATTTGGTGGCTGATTATGAGATGGACCTCCAGGTGCGGCAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCATTTGGTGGCTGATTATGAGATGGACCTCCAGGTGCGGCAAGT  650

seq1  GTCTGGATAGTCCATCCTTTCGTCTCAGCTCCAAACTTTGTCTCTGTAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGATAGTCCATCCTTTCGTCTCAGCTCCAAACTTTGTCTCTGTAAC  700

seq1  TCCTTCCATGGGTGTTTAGTTCCCAATTCTAAGAAGTGGCGAATTGTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCATGGGTGTTTAGTTCCCAATTCTAAGAAGTGGCGAATTGTCCA  750

seq1  CACTTTGCTCTTCCTCCTTCTTGAGTTTCATGTGTTTTGCAAGTTGTATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGCTCTTCCTCCTTCTTGAGTTTCATGTGTTTTGCAAGTTGTATC  800

seq1  TTGGGTATTCTACGTTTCTGGGCTGAAACTCTGTTGGGATATTTTTGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTATTCTACGTTTCTGGGCTGAAACTCTGTTGGGATATTTTTGTAT  850

seq1  TCCTAAGTGCTTAATTAAATGCTTGGGTATCTGCATTTTGTACATATGCA  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCCTAAGTGCTTAATTAAATGCTTGGGTATCTGCA-TTTGTACATATGCA  899

seq1  CACACCTGCCCCCACACACACCCATGCACATACACACAGACCTCCCACTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTGCCCCCACACACACCCATGCACATACACACAGACCTCCCACTG  949

seq1  TCTAATAGCAGCTAAGATATGTTTAAAAATAATTGCACTTTGAAACTCAA  1000
      ||| |||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCT-ATAGCAGCTAAGATATGTTT-AAAATAATTGCACTTTGAAACTCAA  997

seq1  GGGTCTGTTTCACTC--TTCATTATTGGAAGAACCTGGTATTAGCAGAAT  1048
       |||||| |||||||  ||||||||||||||||||||||| |||||||||
seq2  -GGTCTG-TTCACTCCTTTCATTATTGGAAGAACCTGGTAATAGCAGAAT  1045

seq1  GTAGGACAATGAACCAGT--CCACATGGACATACTCTAGGGAAGGAGACA  1096
      ||||  ||||||||||||  |  |||||||||||||||||  | ||||||
seq2  GTAGACCAATGAACCAGTTCCTCCATGGACATACTCTAGG--AAGAGACA  1093

seq1  -GGCTTGCAGAACGTATCAGTGC  1118
       |||||||   ||| ||||||||
seq2  GGGCTTGC--GACGGATCAGTGC  1114