BAC Information

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BAC

Clone NameB6Ng01-239G10
Chromosome16 (Build37)
Map Location 81,202,864 - 81,203,923
singlet/doubletsinglet
Overlap geneNcam2
Upstream geneLOC621365, LOC100039724
Downstream geneLOC621470, LOC435484, Pgk1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239G10.bB6Ng01-239G10.g
ACCGA049838GA049839
length1,0621,165
definitionB6Ng01-239G10.b B6Ng01-239G10.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaacaaggcagtctgaaaaatctaacttagatgcaattgcaatt
aggagagtgtagtgtgaagtaatatgggggcaagtttgtgccgattgatg
cgctgtctggaggaaatcatcccagttgtagagtctgtgcatttatcatc
gctgatgccaagtgtgctggaattcagggaaaggggagaggttggaatgc
ttaagtagctaggcataaacagtgcacaaaggcagatacactttgggtct
ctagatgtagcctgtatttgaaattgtgatttagctgatttataatcagc
acgcagggtggttagagaggagaactgtggcaaggaagcctgcctgcagg
ggaacccatattcctcgtcaatgaaacaggacagacggatggcatctttg
taaagaagatctctctgtctcgtgcagtggcatgccatgcagacaccctt
agtggagtatccgggggaaccagcttttctgtgaacaagcatgtagtatc
gctgtgccatgtgctgtaaggaagtcaaagacgcctggaaacagaaatcc
ttatccaggagtctaaatttctctaggctgctgttttcttctctaattac
gggtgcagccgcaagtatcagacacaccattgggagctattttttttttc
tctttttttaatgaaccatgtgtaacttgcatttctgtttgttctttttt
tcttttctttctttctttctttctttctttcttttttttttttttttttt
ttttttgatgggagccatgaaaacctacaagacagtgaccctcaaggttt
gccttggaaatactaaaagctcaaatggctgatttacgtttcccaacaat
atacttgcaggggatttttatgaagcatgattgaagctattgcttgagaa
agtggtgtgcagttttgactggggaaagaccaccgatgatgtattcctct
tttaagtagtcaaaccgttttgaaccacaacagtagaatggagaaaatgc
tcaagtgaaaaaaaaaaactaacttaagtggatgcccattccatattagc
tacaagacctat

gaattcccaacaataaaagaacttctgtggggaaatcaccatcactgacc
tcaagctgtgttacagagtgagagtaataaaaaccaaatggtattggtaa
cagataggttgaaaaatagaagataattgaagaccggggggggggggata
cctatggacacttaattggtctttgacaaagaagcaaaaacaatactatt
gaaaaagaaatcatcttcaacaaatagtgctggtctaaccagcagtctgc
atatagaagaacgcaaattaatccatatttatctccttttacaaagcaca
agtccaagaggatcaaggagcagcacataaaaccagatatactgaattaa
atacaagagaaagtaggacataaccttgaatgcattggcacaggggaaaa
tttcctgaacagaacacagtagctcaggctctaagatcaacaattgacaa
atgggacctcagtaaactaaaatgcttctgtagagccaaggacactgtca
gtaggacaaaacagaaacctacagatttggaaaagagtttcactaaccct
acatccaatatatacaaagaactcaagaagttagactccaagaaaccata
caaccctcttttaaaatggggtacagagctaaacagagaattctcaacag
aaatcttgggtggccaagaagaagttaaagaaatgttcagcattcttaat
catcagcgaaatgcaaattaaaatgaccctgcaattctacctcacaccaa
tgagaatgactaagatcagaaactcagttgacagcagatgctggcaagga
tgtggacgaagaggaacactcctcccttgctggtaggattgcaaactggt
acaaccactctggaaatcaatctgatgaaccatcagaaaattggaatagt
tctatctgaaaaccaagctatactgcccctgggaatatacccaaagatgc
tccaccctaccacaagacacatgctgcactatgtcatagcagccttattt
atatagccagagctggaaacacccacatgtctcgtctgagagtgactcag
aaaacgtgggttcatacccatagactatccaagcctattataattgagtg
atcatgtacctgcagggaatggatggactagaaaacctttatcctgagct
tagaataacccccga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_81202864_81203923
seq2: B6Ng01-239G10.b_42_1103

seq1  GAATTCAAACAAGGCAGTCTGAAAAATCTAACTTAGATGCAATTGCAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACAAGGCAGTCTGAAAAATCTAACTTAGATGCAATTGCAATT  50

seq1  AGGAGAGTGTAGTGTGAAGTAATATGGGGGCAAGTTTGTGCCGATTGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGTGTAGTGTGAAGTAATATGGGGGCAAGTTTGTGCCGATTGATG  100

seq1  CGCTGTCTGGAGGAAATCATCCCAGTTGTAGAGTCTGTGCATTTATCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGTCTGGAGGAAATCATCCCAGTTGTAGAGTCTGTGCATTTATCATC  150

seq1  GCTGATGCCAAGTGTGCTGGAATTCAGGGAAAGGGGAGAGGTTGGAATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGCCAAGTGTGCTGGAATTCAGGGAAAGGGGAGAGGTTGGAATGC  200

seq1  TTAAGTAGCTAGGCATAAACAGTGCACAAAGGCAGATACACTTTGGGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTAGCTAGGCATAAACAGTGCACAAAGGCAGATACACTTTGGGTCT  250

seq1  CTAGATGTAGCCTGTATTTGAAATTGTGATTTAGCTGATTTATAATCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATGTAGCCTGTATTTGAAATTGTGATTTAGCTGATTTATAATCAGC  300

seq1  ACGCAGGGTGGTTAGAGAGGAGAACTGTGGCAAGGAAGCCTGCCTGCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCAGGGTGGTTAGAGAGGAGAACTGTGGCAAGGAAGCCTGCCTGCAGG  350

seq1  GGAACCCATATTCCTCGTCAATGAAACAGGACAGACGGATGGCATCTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCCATATTCCTCGTCAATGAAACAGGACAGACGGATGGCATCTTTG  400

seq1  TAAAGAAGATCTCTCTGTCTCGTGCAGTGGCATGCCATGCAGACACCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAGATCTCTCTGTCTCGTGCAGTGGCATGCCATGCAGACACCCTT  450

seq1  AGTGGAGTATCCGGGGGAACCAGCTTTTCTGTGAACAAGCATGTAGTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGTATCCGGGGGAACCAGCTTTTCTGTGAACAAGCATGTAGTATC  500

seq1  GCTGTGCCATGTGCTGTAAGGAAGTCAAAGACGCCTGGAAACAGAAATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCCATGTGCTGTAAGGAAGTCAAAGACGCCTGGAAACAGAAATCC  550

seq1  TTATCCAGGAGTCTAAATTTCTCTAGGCTGCTGTTTTCTTCTCTAATTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCAGGAGTCTAAATTTCTCTAGGCTGCTGTTTTCTTCTCTAATTAC  600

seq1  GGGTGCAGCCGCAAGTATCAGACACACCATTGGGAGCTATTTTTTTTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCAGCCGCAAGTATCAGACACACCATTGGGAGCTATTTTTTTTTTC  650

seq1  TCTTTTTTTAATGAACCATGTGTAACTTGCATTTCTGTTTGTTCTTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTAATGAACCATGTGTAACTTGCATTTCTGTTTGTTCTTTTTT  700

seq1  TCTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTT  750

seq1  TTTTTTGAT-GGAGCCATGAAAACCTACAAGACAGTGACCCTC-AGGTTT  798
      ||||||||| ||||||||||||||||||||||||||||||||| ||||||
seq2  TTTTTTGATGGGAGCCATGAAAACCTACAAGACAGTGACCCTCAAGGTTT  800

seq1  GCCTTGGAAATACTAAAAGCTCAAATGGCTGATTTACGTTT-CCAACAAT  847
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCCTTGGAAATACTAAAAGCTCAAATGGCTGATTTACGTTTCCCAACAAT  850

seq1  ATACTTGCAGGGGA-TTTTATGAAGCATGATTGAAGCTATTGCTTGAGAA  896
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATACTTGCAGGGGATTTTTATGAAGCATGATTGAAGCTATTGCTTGAGAA  900

seq1  AGTGGTGTGCAG-TTTGACTGGGGAAAGA-CAACGATGATGTATTCC-CT  943
      |||||||||||| |||||||||||||||| || |||||||||||||| ||
seq2  AGTGGTGTGCAGTTTTGACTGGGGAAAGACCACCGATGATGTATTCCTCT  950

seq1  TTTAAGTAGTCAAAACGTTTTGAACCACAACAGTAGAATGGAAGAAAATG  993
      |||||||||||||| |||||||||||||||||||||||||| ||||||| 
seq2  TTTAAGTAGTCAAACCGTTTTGAACCACAACAGTAGAATGG-AGAAAAT-  998

seq1  GCTCAAGTGAAAAAAAAAAAACTAACTTAAGTGGATGCCAATCCCATAAT  1043
      ||||||||| ||||||||||||||||||||||||||||| || |||| ||
seq2  GCTCAAGTG-AAAAAAAAAAACTAACTTAAGTGGATGCCCATTCCAT-AT  1046

seq1  TAGCTAACAAGACCTAT  1060
      ||||| |||||||||||
seq2  TAGCT-ACAAGACCTAT  1062


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