BAC Information

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BAC

Clone NameB6Ng01-239G14
Chromosome16 (Build37)
Map Location 26,609,919 - 26,718,284
singlet/doubletdoublet
Overlap geneIl1rap
Upstream geneTrp63, LOC100043571, Leprel1, Cldn1, Cldn16, LOC100043057
Downstream geneGm606, Ostn, Uts2d, Ccdc50
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239G14.bB6Ng01-239G14.g
ACCGA049846GA049847
length1,104353
definitionB6Ng01-239G14.b B6Ng01-239G14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,717,180 - 26,718,284)(26,609,919 - 26,610,271)
sequence
gaattctgttatcatttaactctgtctgatagttgtttattaactgagta
gaaatctgtgtgctcactagtttggtccatacatcttggctccattcttt
tgtggttggaaagagttgtctgtacattagcaaagttagaaactacaacc
agagacataagtgcgcttttgttttaaagtagcactaattgtggcttctg
catccctccatctacacatgtatacccctatcctagagcaccgaataatc
cattttattcaagcagttcttttacttatatgcaaagaaaacactcttga
tataaagttcgcacctttcttagcttttcctcaataaatatttaactatt
ataatatctttcatttctttttataaatataatcactctttttactctca
cttctcaagcccaaacatgaagataaggacacaaaacacatgcacaaaat
aaaattcaaaggtgaaaataaacggtttattgcaaaaatatgtaaatata
caaatcaaatgaaaatggaaaatacatatgtttatgaataaaattaaaaa
tggtcttacagtactaaaacctatggaaacaattgggtagttaacaagtg
gagtgatccttttgtttctcaatacaagacagtacttttttttttattag
catctctgggactcatctaagatacaaaagagaattaaatcccatgtggc
tgtatacatatacactctacatagcatgctgctttgttaacctgggtgca
gaagttctcattatcataaatacaagtgtgtgtccccctctctctgctgt
tctatttgaagcatcttctgaaacactgagtcttgaaattaaatctactt
aggatgagatatgttatttagatttgatatgctttatgctatagcactag
agtgggctcagaataagaaggccctataaatagaaaaaacatggaggtga
tataatagtgggctggggatgaataacagactccaaccgtgcagaaacta
cagaggaacagaggaacagctgtggtgacaagtctgggccccttgtgttc
catagtccatgcgaagtaacattcaagtttatgtggcactatctgtactg
tgat
taatgtttggagatattatgaaagggcaatcttcacagttggttaagatg
gaagaatactgtgattaatgcctaaataatttagttttgtaataggcatt
agcattgtaaaagacccaagacttcctgcaggaaagatctcttctttatt
tagtccttcacgtattatttatagcctagtactacatgcctaaaatgtag
gcccaacaccaatccaaaacttaccaaaaaaaaaaaaaaaaaaaaaaaac
attctgtaaaagtctaggcatgtgatctacagagtctggatagtaattta
agagtaaagagttgaagtatccagagtttattgactgtactcatttgtgt
gtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_26717180_26718284
seq2: B6Ng01-239G14.b_44_1147 (reverse)

seq1  ATCACAGTACCAGATAAGTTCCACATAAACTTTGAATGTTACCTTCCGCA  50
      ||||||||| ||||| ||| |||||||||| |||||||||||  | ||||
seq2  ATCACAGTA-CAGAT-AGTGCCACATAAAC-TTGAATGTTAC--TTCGCA  45

seq1  TGGACTTATGGGAACACAAGGG--CCAGACTTGTCACCACAGCTGTTCCC  98
      ||||| ||| ||||||||||||  ||||||||||||||||||||||| ||
seq2  TGGAC-TAT-GGAACACAAGGGGCCCAGACTTGTCACCACAGCTGTT-CC  92

seq1  TCTGTT-CTCTGTAGTTTCTGCACGGTTGGAGTCTG-TATTCAT-CCCAG  145
      |||||| ||||||||||||||||||||||||||||| ||||||| |||||
seq2  TCTGTTCCTCTGTAGTTTCTGCACGGTTGGAGTCTGTTATTCATCCCCAG  142

seq1  -CCACTATTATATCACCTCCATG-TTTTTCTATTTATAGGCCCTTCTTAT  193
       |||||||||||||||||||||| |||||||||||||||| |||||||||
seq2  CCCACTATTATATCACCTCCATGTTTTTTCTATTTATAGGGCCTTCTTAT  192

seq1  TCTGAGCCCACTCTAGTGCTATAGCATAAAGCATATCAAATCTAAATAAC  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCCCACTCTAGTGCTATAGCATAAAGCATATCAAATCTAAATAAC  242

seq1  ATATCTCATCCTAAGTAGATTTAATTTCAAGACTCAGTGTTTCAGAAGAT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCATCCTAAGTAGATTTAATTTCAAGACTCAGTGTTTCAGAAGAT  292

seq1  GCTTCAAATAGAACAGCAGAGAGAGGGGGACACACACTTGTATTTATGAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAAATAGAACAGCAGAGAGAGGGGGACACACACTTGTATTTATGAT  342

seq1  AATGAGAACTTCTGCACCCAGGTTAACAAAGCAGCATGCTATGTAGAGTG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGAACTTCTGCACCCAGGTTAACAAAGCAGCATGCTATGTAGAGTG  392

seq1  TATATGTATACAGCCACATGGGATTTAATTCTCTTTTGTATCTTAGATGA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTATACAGCCACATGGGATTTAATTCTCTTTTGTATCTTAGATGA  442

seq1  GTCCCAGAGATGCTAATAAAAAAAAAAGTACTGTCTTGTATTGAGAAACA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGAGATGCTAATAAAAAAAAAAGTACTGTCTTGTATTGAGAAACA  492

seq1  AAAGGATCACTCCACTTGTTAACTACCCAATTGTTTCCATAGGTTTTAGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATCACTCCACTTGTTAACTACCCAATTGTTTCCATAGGTTTTAGT  542

seq1  ACTGTAAGACCATTTTTAATTTTATTCATAAACATATGTATTTTCCATTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAAGACCATTTTTAATTTTATTCATAAACATATGTATTTTCCATTT  592

seq1  TCATTTGATTTGTATATTTACATATTTTTGCAATAAACCGTTTATTTTCA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGATTTGTATATTTACATATTTTTGCAATAAACCGTTTATTTTCA  642

seq1  CCTTTGAATTTTATTTTGTGCATGTGTTTTGTGTCCTTATCTTCATGTTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGAATTTTATTTTGTGCATGTGTTTTGTGTCCTTATCTTCATGTTT  692

seq1  GGGCTTGAGAAGTGAGAGTAAAAAGAGTGATTATATTTATAAAAAGAAAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTGAGAAGTGAGAGTAAAAAGAGTGATTATATTTATAAAAAGAAAT  742

seq1  GAAAGATATTATAATAGTTAAATATTTATTGAGGAAAAGCTAAGAAAGGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATATTATAATAGTTAAATATTTATTGAGGAAAAGCTAAGAAAGGT  792

seq1  GCGAACTTTATATCAAGAGTGTTTTCTTTGCATATAAGTAAAAGAACTGC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAACTTTATATCAAGAGTGTTTTCTTTGCATATAAGTAAAAGAACTGC  842

seq1  TTGAATAAAATGGATTATTCGGTGCTCTAGGATAGGGGTATACATGTGTA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATAAAATGGATTATTCGGTGCTCTAGGATAGGGGTATACATGTGTA  892

seq1  GATGGAGGGATGCAGAAGCCACAATTAGTGCTACTTTAAAACAAAAGCGC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGGGATGCAGAAGCCACAATTAGTGCTACTTTAAAACAAAAGCGC  942

seq1  ACTTATGTCTCTGGTTGTAGTTTCTAACTTTGCTAATGTACAGACAACTC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATGTCTCTGGTTGTAGTTTCTAACTTTGCTAATGTACAGACAACTC  992

seq1  TTTCCAACCACAAAAGAATGGAGCCAAGATGTATGGACCAAACTAGTGAG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAACCACAAAAGAATGGAGCCAAGATGTATGGACCAAACTAGTGAG  1042

seq1  CACACAGATTTCTACTCAGTTAATAAACAACTATCAGACAGAGTTAAATG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGATTTCTACTCAGTTAATAAACAACTATCAGACAGAGTTAAATG  1092

seq1  ATAACAGAATTC  1105
      ||||||||||||
seq2  ATAACAGAATTC  1104

seq1: chr16_26609919_26610271
seq2: B6Ng01-239G14.g_71_423

seq1  TAATGTTTGGAGATATTATGAAAGGGCAATCTTCACAGTTGGTTAAGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTTGGAGATATTATGAAAGGGCAATCTTCACAGTTGGTTAAGATG  50

seq1  GAAGAATACTGTGATTAATGCCTAAATAATTTAGTTTTGTAATAGGCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATACTGTGATTAATGCCTAAATAATTTAGTTTTGTAATAGGCATT  100

seq1  AGCATTGTAAAAGACCCAAGACTTCCTGCAGGAAAGATCTCTTCTTTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTGTAAAAGACCCAAGACTTCCTGCAGGAAAGATCTCTTCTTTATT  150

seq1  TAGTCCTTCACGTATTATTTATAGCCTAGTACTACATGCCTAAAATGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCTTCACGTATTATTTATAGCCTAGTACTACATGCCTAAAATGTAG  200

seq1  GCCCAACACCAATCCAAAACTTACCAAAAAAAAAAAAAAAAAAAAAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAACACCAATCCAAAACTTACCAAAAAAAAAAAAAAAAAAAAAAAAC  250

seq1  ATTCTGTAGAAGTCTAGGCATGTGATCTACAGAGTCTGGATAGTAATTTA  300
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTAAAAGTCTAGGCATGTGATCTACAGAGTCTGGATAGTAATTTA  300

seq1  AGAGTAAAGAGTTGAAGTATCCAGAGTTTATTGACTGTACTCATTTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAAGAGTTGAAGTATCCAGAGTTTATTGACTGTACTCATTTGTGT  350

seq1  GTG  353
      |||
seq2  GTG  353