BAC Information

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BAC

Clone NameB6Ng01-239I08
Chromosome16 (Build37)
Map Location 90,197,179 - 90,362,687
singlet/doubletdoublet
Overlap geneLOC100040440, Sod1, Sfrs15, LOC545175
Upstream geneEG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik, Tiam1, LOC100040496, LOC640694
Downstream geneHunk, 2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2, Olig2, Olig1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239I08.bB6Ng01-239I08.g
ACCGA049923GA049924
length198373
definitionB6Ng01-239I08.b B6Ng01-239I08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,362,490 - 90,362,687)(90,197,179 - 90,197,557)
sequence
gaattccaaggtcaggggctgcaaatagtgcaagcctttgagcatggtgg
aagggcaggcaagcacatgcagagtataagaggccagatttacctatgcc
attgttgccacagcctcttcctcctccccctcctccccctcctcttcccc
ctcttccccccttcctcctcctcctcttcctcctccccctcctcctcc
tttattgcacaatctactctctctgcaacccactgttgtaagtgtgtgcc
ctgcgggccatcacattggatttatgtgagtttctgtgcccacagaaagg
gaaatccaatttgactacaaaacatgactgggaaatagaatgtgaacatc
ccagaaggggaagacaaggcacaggggacacataggtgaactttatgaag
acagaaatgcagtaagttccaaggacagagaagtcacgtctggagttttt
ctctgtgctgtccatgtagaagcaaagtgctggttggagcccattgattg
ctggttccagtcctgttcctgactgattgcacagaggacacctagggcaa
gttcggggttggggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_90362490_90362687
seq2: B6Ng01-239I08.b_41_238 (reverse)

seq1  GGAGGAGGAGGGGGAGGAGGAAGAGGAGGAGGAGGAAGGGGGGAAGAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGAGGGGGAGGAGGAAGAGGAGGAGGAGGAAGGGGGGAAGAGGG  50

seq1  GGAAGAGGAGGGGGAGGAGGGGGAGGAGGAAGAGGCTGTGGCAACAATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGGAGGGGGAGGAGGGGGAGGAGGAAGAGGCTGTGGCAACAATGG  100

seq1  CATAGGTAAATCTGGCCTCTTATACTCTGCATGTGCTTGCCTGCCCTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGTAAATCTGGCCTCTTATACTCTGCATGTGCTTGCCTGCCCTTCC  150

seq1  ACCATGCTCAAAGGCTTGCACTATTTGCAGCCCCTGACCTTGGAATTC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCTCAAAGGCTTGCACTATTTGCAGCCCCTGACCTTGGAATTC  198

seq1: chr16_90197179_90197557
seq2: B6Ng01-239I08.g_64_442

seq1  GAATTCTTTATTGCACAATCTACTCTCTCTGCAACCCACTGTTGTAAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATTGCACAATCTACTCTCTCTGCAACCCACTGTTGTAAGTG  50

seq1  TGTGCCCTGCGGGCCATCACATTGGATTTATGTGAGTTTCTGTGCCCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCTGCGGGCCATCACATTGGATTTATGTGAGTTTCTGTGCCCACA  100

seq1  GAAAGGGAAATCCAATTTGACTACAAAACATGACTGGGAAATAGAATGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGAAATCCAATTTGACTACAAAACATGACTGGGAAATAGAATGTG  150

seq1  AACATCCCAGAAGGGGAAGACAAGGCACAGGGGACACATAGGTGAACTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCCCAGAAGGGGAAGACAAGGCACAGGGGACACATAGGTGAACTTT  200

seq1  ATGAAGACAGAAATGCAGTAAGTTCCAAGGACAGAGAAGTCACGTCTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGACAGAAATGCAGTAAGTTCCAAGGACAGAGAAGTCACGTCTGGA  250

seq1  GTTTTTCTCTGTGCTGTCCATGTAGAAGCAAAGTGCTGGTTGGAGCCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCTCTGTGCTGTCCATGTAGAAGCAAAGTGCTGGTTGGAGCCCAT  300

seq1  TGATTGCTGGTTCCAGTCCTGTTCCTGACTGATTGCACAGAGGACACCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGCTGGTTCCAGTCCTGTTCCTGACTGATTGCACAGAGGACACCTA  350

seq1  GGGCAAGTTCGGGGTTGGGGGGGGGGGGG  379
      |||||||||||||||||||||||||||||
seq2  GGGCAAGTTCGGGGTTGGGGGGGGGGGGG  379