BAC Information

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BAC

Clone NameB6Ng01-239M02
Chromosome16 (Build37)
Map Location 71,340,466 - 71,493,062
singlet/doubletdoublet
Overlap genenone
Upstream geneGbe1, D16Ertd519e, LOC100039231
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239M02.bB6Ng01-239M02.g
ACCGA050099GA050100
length1,1441,109
definitionB6Ng01-239M02.b B6Ng01-239M02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,491,898 - 71,493,062)(71,340,466 - 71,341,363)
sequence
gaattcttactgataccaaaatgtacaaatattttatgtaaaaaactacc
ttagaaattgttcataacttgtaacattcttcaacatatttttttaaatc
aatgattagttctgagtgtagtataaatgaaataaatataattgatattc
aatattgtttaggaaataatgttaggctattaagtctgcatattcagaaa
atgaaaagaaaattccctattttcaacttgaagtttgtagagtcaattta
tgcagacatggaaatgaagaaccagctatatatattaagggtaaacatca
atactaaaatcacttttggcaatataaatagcatatatgagtgcatatat
ttaaattttcagtatttagtcattgttcacgtagtgtaaaattttaacat
attttaaatatgctctgtacaaattgtgtgcggtgcatgtgtaaatgttc
tttgttctgtgtgtttatgactgagcatatacataataaagcaataggac
attttggctattattcctgttagtagaacattgtagtgataaatgttaaa
atggtattgttattcatattctgcattcgttgttatcatcttaatacttc
ttttagttttcaacagtgaaaatcagttacattgtgataagaaaatgctc
accagctataattgcacttgctgaaatagtttcacttttccttggaaagt
gttatggctaagtttgatggcaacaggtttatataaaatgaggaacaaaa
ttgatcagtatataagaatatagttcaatgttcttaataatcaaataata
caaagtaattaaagaacaaattactacttttatgttatgaattgttatac
aaaggaataaaatgtcattccttttttgtgatgcctatttctaaaatgct
caaaagaatttataatcatttttatgctactgagaatgtggtcatgtcaa
taggaaatcctttctaaaatgtatattctatgtgctttactatctcattt
agtggccacatcaaccatgtgtcaaggtgtactgtgatagtgggcagcat
gttgatgagtatgagcagtcatttcgatgcacactacttgtgacagttcc
aacgagagtatatatccaggcgaagaacgaatctacaagtcttt

gaattctttgtttagctctgaaccccaattttaatggggttatttgaatt
tctggagtccagcttctcgagctctttgtatatattggatattagtcccc
tctcagatttaggattggtcctttcccaatctgttggtggccttttttgt
cttattgacagtgtcttttgccttgtagaagctttgcaattttatgaggt
cccatttatcaattcttgatcttatagtacaagccattgctgttctgttt
aggactttttcccctgtgcccatatcttcgaggcttttccccactttctc
ttctattaatttcagtgtctctggtcttatgtggaggtctttgatccact
tagacttgagctttgtacaaggagataagaatggatcaactcacattctt
tacatgataactgcttgttgtgtcagcaccatttgttgaaaatgctgtct
ttatttccactggatggtttctctcagtacagttttgagggtatataaaa
atccaggtcgtcatgtctgtcagatctcacagtatgtattctttcattca
gcataatcacttggacattcatataagttctgtaagacaatggctctttt
attgatgagttatagcttgtgctataagccctgttattccctgaaactct
ttgtgccatatcaacaatatacagtcagtgaatatgacccgagttataag
tgtctgtgttctgtctttcacgtgaccataaatttttatgctgtctcatt
aaatgaatctaatgactttcttgaaacaagacatggctaaccatgctgcc
aaacttgttccccttccagactcagtgagcaacttttcactcagcatcat
ttcagtgtgagattcatttgtctttcctgtcatgactaagaactcttact
tcactgggacccccaaaagatgtttgttttttttttctcttaatgctaca
cagttcaaattttatatggatctacattcatttatgggttaacattgata
gatattctatagatttgtgtttctaataagatatgtattggaataaaaat
agtttatattttgaaataaataagtgactatattggcacgactctcatct
agctctatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_71491898_71493062
seq2: B6Ng01-239M02.b_43_1186 (reverse)

seq1  AAAGACTTTGTAAGATTTTGTTCTTCGCCTGAATATATACTCTCGTTGGA  50
      |||||| |||| ||| || |||||||||||| ||||||||||||||||||
seq2  AAAGAC-TTGT-AGA-TTCGTTCTTCGCCTGGATATATACTCTCGTTGGA  47

seq1  AACTTGTCACAAGTTAAGTGTGCATTCGAAAATGAACTGCTCAATAACCT  100
      |   ||||||||||  |||||||| ||| ||||| ||||||| |||  ||
seq2  A--CTGTCACAAGT--AGTGTGCA-TCG-AAATG-ACTGCTC-ATA--CT  87

seq1  CATCAAACATGCTTGCCCACTATTCACCTTGTACACCTTGACACATTGGT  150
      |||| ||||||| ||||||||| ||||   ||||||||||||||| ||||
seq2  CATC-AACATGC-TGCCCACTA-TCAC--AGTACACCTTGACACA-TGGT  131

seq1  TGATGTGGCCACTAAATGAGATAGTTAAAAGCACATAGAATATACATTTT  200
      |||||||||||||||||||||||||  |||||||||||||||||||||||
seq2  TGATGTGGCCACTAAATGAGATAGT--AAAGCACATAGAATATACATTTT  179

seq1  AGAAAGGATTTCCTATTGACATGACCACATTCTCAGTAGCATAAAAATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGATTTCCTATTGACATGACCACATTCTCAGTAGCATAAAAATGA  229

seq1  TTATAAATTCTTTTGAGCATTTTAGAAATAGGCATCACAAAAAAGGAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATTCTTTTGAGCATTTTAGAAATAGGCATCACAAAAAAGGAATG  279

seq1  ACATTTTATTCCTTTGTATAACAATTCATAACATAAAAGTAGTAATTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTATTCCTTTGTATAACAATTCATAACATAAAAGTAGTAATTTGT  329

seq1  TCTTTAATTACTTTGTATTATTTGATTATTAAGAACATTGAACTATATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAATTACTTTGTATTATTTGATTATTAAGAACATTGAACTATATTC  379

seq1  TTATATACTGATCAATTTTGTTCCTCATTTTATATAAACCTGTTGCCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATACTGATCAATTTTGTTCCTCATTTTATATAAACCTGTTGCCATC  429

seq1  AAACTTAGCCATAACACTTTCCAAGGAAAAGTGAAACTATTTCAGCAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTAGCCATAACACTTTCCAAGGAAAAGTGAAACTATTTCAGCAAGT  479

seq1  GCAATTATAGCTGGTGAGCATTTTCTTATCACAATGTAACTGATTTTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTATAGCTGGTGAGCATTTTCTTATCACAATGTAACTGATTTTCAC  529

seq1  TGTTGAAAACTAAAAGAAGTATTAAGATGATAACAACGAATGCAGAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAAAACTAAAAGAAGTATTAAGATGATAACAACGAATGCAGAATAT  579

seq1  GAATAACAATACCATTTTAACATTTATCACTACAATGTTCTACTAACAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAACAATACCATTTTAACATTTATCACTACAATGTTCTACTAACAGG  629

seq1  AATAATAGCCAAAATGTCCTATTGCTTTATTATGTATATGCTCAGTCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAGCCAAAATGTCCTATTGCTTTATTATGTATATGCTCAGTCATA  679

seq1  AACACACAGAACAAAGAACATTTACACATGCACCGCACACAATTTGTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACAGAACAAAGAACATTTACACATGCACCGCACACAATTTGTACA  729

seq1  GAGCATATTTAAAATATGTTAAAATTTTACACTACGTGAACAATGACTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATATTTAAAATATGTTAAAATTTTACACTACGTGAACAATGACTAA  779

seq1  ATACTGAAAATTTAAATATATGCACTCATATATGCTATTTATATTGCCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGAAAATTTAAATATATGCACTCATATATGCTATTTATATTGCCAA  829

seq1  AAGTGATTTTAGTATTGATGTTTACCCTTAATATATATAGCTGGTTCTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATTTTAGTATTGATGTTTACCCTTAATATATATAGCTGGTTCTTC  879

seq1  ATTTCCATGTCTGCATAAATTGACTCTACAAACTTCAAGTTGAAAATAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCATGTCTGCATAAATTGACTCTACAAACTTCAAGTTGAAAATAGG  929

seq1  GAATTTTCTTTTCATTTTCTGAATATGCAGACTTAATAGCCTAACATTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTCTTTTCATTTTCTGAATATGCAGACTTAATAGCCTAACATTAT  979

seq1  TTCCTAAACAATATTGAATATCAATTATATTTATTTCATTTATACTACAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAAACAATATTGAATATCAATTATATTTATTTCATTTATACTACAC  1029

seq1  TCAGAACTAATCATTGATTTAAAAAAATATGTTGAAGAATGTTACAAGTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACTAATCATTGATTTAAAAAAATATGTTGAAGAATGTTACAAGTT  1079

seq1  ATGAACAATTTCTAAGGTAGTTTTTTACATAAAATATTTGTACATTTTGG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAATTTCTAAGGTAGTTTTTTACATAAAATATTTGTACATTTTGG  1129

seq1  TATCAGTAAGAATTC  1165
      |||||||||||||||
seq2  TATCAGTAAGAATTC  1144


seq1: chr16_71340466_71341363
seq2: B6Ng01-239M02.g_289_1175

seq1  TATAGTACAAGCCATTGCTGTTCTGTTTAGGACTTTTTCCCCTGTGCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTACAAGCCATTGCTGTTCTGTTTAGGACTTTTTCCCCTGTGCCCA  50

seq1  TATCTTCGAGGCTTTTCCCCACTTTCTCTTCTATTAATTTCAGTGTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCGAGGCTTTTCCCCACTTTCTCTTCTATTAATTTCAGTGTCTCT  100

seq1  GGTCTTATGTGGAGGTCTTTGATCCACTTAGACTTGAGCTTTGTACAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTATGTGGAGGTCTTTGATCCACTTAGACTTGAGCTTTGTACAAGG  150

seq1  AGATAAGAATGGATCAACTCACATTCTTTACATGATAACTGCTTGTTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGAATGGATCAACTCACATTCTTTACATGATAACTGCTTGTTGTG  200

seq1  TCAGCACCATTTGTTGAAAATGCTGTCTTTATTTCCACTGGATGGTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACCATTTGTTGAAAATGCTGTCTTTATTTCCACTGGATGGTTTCT  250

seq1  CTCAGTACAGTTTTGAGGGTATATAAAAATCCAGGTCGTCATGTCTGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTACAGTTTTGAGGGTATATAAAAATCCAGGTCGTCATGTCTGTCA  300

seq1  GATCTCACAGTATGTATTCTTTCATTCAGCATAATCACTTGGACATTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCACAGTATGTATTCTTTCATTCAGCATAATCACTTGGACATTCAT  350

seq1  ATAAGTTCTGTAAGACAATGGCTCTTTTATTGATGAGTTATAGCTTGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTCTGTAAGACAATGGCTCTTTTATTGATGAGTTATAGCTTGTGC  400

seq1  TATAAGCCCTGTTATTCCCTGAAACTCTTTGTGCCATATCAACAATATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGCCCTGTTATTCCCTGAAACTCTTTGTGCCATATCAACAATATAC  450

seq1  AGTCAGTGAATATGACCCGAGTTATAAGTGTCTGTGTTCTGTCTTTCACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTGAATATGACCCGAGTTATAAGTGTCTGTGTTCTGTCTTTCACG  500

seq1  TGACCATAAATTTTTATGCTGTCTCATTAAATGAATCTAATGACTTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATAAATTTTTATGCTGTCTCATTAAATGAATCTAATGACTTTCTT  550

seq1  GAAACAAGACATGGCTAACCATGCTGCCAAACTTGTTCCCCTTCCAGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAGACATGGCTAACCATGCTGCCAAACTTGTTCCCCTTCCAGACT  600

seq1  CAGTGAGCAACTTTTCACTCAGCATCATTTCAGTGTGAGATTCATTTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGCAACTTTTCACTCAGCATCATTTCAGTGTGAGATTCATTTGTC  650

seq1  TTTCCTGTCATGACTAAGAACTCTTACTTCACT-GGACCCCCAAAAGATG  699
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTCCTGTCATGACTAAGAACTCTTACTTCACTGGGACCCCCAAAAGATG  700

seq1  TTTG-TTTTTTTTTCTCTTAAATGCTACACAGTTCAAATTTTATATGGAT  748
      |||| |||||||||||||| ||||||||||||||||||||||||||||| 
seq2  TTTGTTTTTTTTTTCTCTT-AATGCTACACAGTTCAAATTTTATATGGA-  748

seq1  TCTACAATTCATTTAT-GGTTAACATTGAATAAGATATTCTATTAGAATT  797
      ||||| |||||||||| ||||||||||||   |||||||||| ||| |||
seq2  TCTAC-ATTCATTTATGGGTTAACATTGA--TAGATATTCTA-TAG-ATT  793

seq1  TGTGTTTCTAAATAAGATTAATTGTTATTTGGGATAAAATAGGTTTATAT  847
      ||||||||| ||||||||    |||   |||| ||||||   ||||||||
seq2  TGTGTTTCT-AATAAGAT---ATGT--ATTGGAATAAAAATAGTTTATAT  837

seq1  TTTGAAATAAATAAGTGACTATATTTGCACGACTCTCCATCTAGCTCTAT  897
      ||||||||||||||||||||||||| |||||||||| |||||||||||||
seq2  TTTGAAATAAATAAGTGACTATATTGGCACGACTCT-CATCTAGCTCTAT  886

seq1  G  898
      |
seq2  G  887


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