BAC Information

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BAC

Clone NameB6Ng01-240H13
Chromosome16 (Build37)
Map Location 72,533,963 - 72,712,161
singlet/doubletdoublet
Overlap geneRobo1
Upstream genenone
Downstream geneLOC100039310, LOC100039318, LOC100039326
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240H13.bB6Ng01-240H13.g
ACCGA050634GA050635
length1,1701,080
definitionB6Ng01-240H13.b B6Ng01-240H13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,533,963 - 72,535,145)(72,711,152 - 72,712,161)
sequence
gaattcatttaataatcagtatgtatttaccttatcaaaacttaggatat
gtgtaattctacagtatataaaaggctttatattgatgggaaacagtaat
caattcaatgttacattcagaaaacaagttagttagacagagctgagcct
gcagaagagacttccaccagtttcagatgttgaaaggcattttaactgaa
atatgaatttgactcaaattaagggtcctcagctgtcagtggaagaccag
aaaggcagctgggaactagtgattaaaaccttttcagactttcctgaaac
ttcaagctaacttagcagacattcaggactgtaagctgagtagagagagc
tgtttggtgagtccttggttataagaaccaatgagtgaatagtttgtgct
cagagggttagcggtgggggtgaaacctgacttcattcatggctataaag
taaattttattttctgaagctacttttgtagggtgatttggctaactctt
gggattctggttcaagttttgattctaccactttctaaccatgtaaattt
gataggtctctaaccgcatggagactatggtccttctttcataaacctga
ggcacatctggtcctgccttttacggctgttaggggtagataaaataatg
cccattgctaaggcagctctcagcacacatattgtgtacaccgctgcaaa
aatgagactggcctctcttagagttactggcccttgggatatacaaaata
ccaggctccatcttatatatacatcctatttttacaagatatttgagtca
ctgaatacttgtaggcaataaaaaaaaaagtttccttttcacccatcagc
atactcgacttttaagatttttgtatttcttttcactgggtttagttttc
atatgtaagtacaatcactcaagaaaggagtagaccctttccctactggg
tacctgcatgtactctggcccacacttctcatctcttctcttcaaaagtg
tcctattttcttttctttgtagaatggacttagcagccataaagcaacat
aacaaagtagatcttaaactctgcttctgtgatgtcacagtgactgtggc
cttgatgatgggagacctgtgtatcgtcttctgttctttgtttggtatca
gtgcatcatggttcagtgga

gaattcttattgctatgatgaaacatcatggcctggcggcagtggtggcg
cacgcctttaatcccagcacttgggaggcagaggcaggcggatttctgag
ttcgaggccagcctggtctacagagtgagttccaggacagtcagggcgat
acagagaaaccctgtctcgaacaaagaaaatgaaacatcaaggccaatag
caatttcgggaaggggtgagaggggggcgctgctatttggcttacaggtc
caaatcaatgttaatcactgaagaaagttaggtcaggaactcggacaaga
atctgaagcaagagctggtgcagaggaaatggagagatgctgctcacagg
ctttttcagtctactttcttacagaacctaagataaccaacccaggagtg
gctccacccacaatgggtggggccctcacacatcaatcactaattaagaa
aatgcccagcacccttttggacagcccaatcttctggatgcatttcctca
actgggcttctctcctcgcagatgactctaatctgtgtcaagtggacata
aaattatccaacacaccacatttgagaaactaactgccattctggtatac
aggacactttgcctaaaatacaagaagagtattgctgtaaccaataaaat
atgactccccctcaaaaaaaaataattaatttctaactgtattcaccaag
acaaatagctagtaaaaactggagtattatagaaactcacatatggaaaa
acctagttttaacagtaaggatgaatgaaggagtatagggcaaaagacca
tgatgtaggaacatgagcaggaaggagacctaattttagttttcttatgc
tgatgatgattttttgaatcacatattgagtagattgctaattgcctaga
aatctcacttagcactgcatggccttccatgatcagggcctgctcaagac
gaaagtaaaatgaaacaagcctacaataaactccacttactatatacact
ctaatttaccactggagaaacacagtatcacttcacttctcagtgggtgg
tgttggtgctgccatggaccagaaggtcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_72533963_72535145
seq2: B6Ng01-240H13.b_43_1212

seq1  GAATTCATTTAATAATCAGTATGTATTTACCTTATCAAAACTTAGGATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTAATAATCAGTATGTATTTACCTTATCAAAACTTAGGATAT  50

seq1  GTGTAATTCTACAGTATATAAAAGGCTTTATATTGATGGGAAACAGTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATTCTACAGTATATAAAAGGCTTTATATTGATGGGAAACAGTAAT  100

seq1  CAATTCAATGTTACATTCAGAAAACAAGTTAGTTAGACAGAGCTGAGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCAATGTTACATTCAGAAAACAAGTTAGTTAGACAGAGCTGAGCCT  150

seq1  GCAGAAGAGACTTCCACCAGTTTCAGATGTTGAAAGGCATTTTAACTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGAGACTTCCACCAGTTTCAGATGTTGAAAGGCATTTTAACTGAA  200

seq1  ATATGAATTTGACTCAAATTAAGGGTCCTCAGCTGTCAGTGGAAGACCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAATTTGACTCAAATTAAGGGTCCTCAGCTGTCAGTGGAAGACCAG  250

seq1  AAAGGCAGCTGGGAACTAGTGATTAAAACCTTTTCAGACTTTCCTGAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCAGCTGGGAACTAGTGATTAAAACCTTTTCAGACTTTCCTGAAAC  300

seq1  TTCAAGCTAACTTAGCAGACATTCAGGACTGTAAGCTGAGTAGAGAGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGCTAACTTAGCAGACATTCAGGACTGTAAGCTGAGTAGAGAGAGC  350

seq1  TGTTTGGTGAGTCCTTGGTTATAAGAACCAATGAGTGAATAGTTTGTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGTGAGTCCTTGGTTATAAGAACCAATGAGTGAATAGTTTGTGCT  400

seq1  CAGAGGGTTAGCGGTGGGGGTGAAACCTGACTTCATTCATGGCTATAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGTTAGCGGTGGGGGTGAAACCTGACTTCATTCATGGCTATAAAG  450

seq1  TAAATTTTATTTTCTGAAGCTACTTTTGTAGGGTGATTTGGCTAACTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTTATTTTCTGAAGCTACTTTTGTAGGGTGATTTGGCTAACTCTT  500

seq1  GGGATTCTGGTTCAAGTTTTGATTCTACCACTTTCTAACCATGTAAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTCTGGTTCAAGTTTTGATTCTACCACTTTCTAACCATGTAAATTT  550

seq1  GATAGGTCTCTAACCGCATGGAGACTATGGTCCTTCTTTCATAAACCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGTCTCTAACCGCATGGAGACTATGGTCCTTCTTTCATAAACCTGA  600

seq1  GGCACATCTGGTCCTGCCTTTTACGGCTGTTAGGGGTAGATAAAATAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACATCTGGTCCTGCCTTTTACGGCTGTTAGGGGTAGATAAAATAATG  650

seq1  CCCATTGCTAAGGCAGCTCTCAGCACACATATTGTGTACACCGCTGCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTGCTAAGGCAGCTCTCAGCACACATATTGTGTACACCGCTGCAAA  700

seq1  AATGAGACTGGCCTCTCTTAGAGTTACTGGCCCTTGGGATATACAAAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGACTGGCCTCTCTTAGAGTTACTGGCCCTTGGGATATACAAAATA  750

seq1  CCAGGCTCCATCTTATATATACATCCTATTTTTACAAGATATTTGAGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTCCATCTTATATATACATCCTATTTTTACAAGATATTTGAGTCA  800

seq1  CTGAATACTTGTAGGCAATAAAAAAAAAAGTTTCCTTTTCACCCATCAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATACTTGTAGGCAATAAAAAAAAAAGTTTCCTTTTCACCCATCAGC  850

seq1  ATACTCGACTTTTAAGATTTTTGTATTTCTTTTCACTGGGTTTAGTTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCGACTTTTAAGATTTTTGTATTTCTTTTCACTGGGTTTAGTTTTC  900

seq1  ATATGTAAGTACAAATCACTCAAGAAAGGAGTAGACCCTTTCCCTACTGG  950
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATATGTAAGTAC-AATCACTCAAGAAAGGAGTAGACCCTTTCCCTACTGG  949

seq1  GTACCTGCATGTACTCTGGCCCACACTTCTCATCTCTTCCTCTTCAAAAA  1000
      |||||||||||||||||||||||||||||||||||||| |||||||||| 
seq2  GTACCTGCATGTACTCTGGCCCACACTTCTCATCTCTT-CTCTTCAAAA-  997

seq1  GGTGTCCTATTTTCTTTTCTTTGTAGAAGGGGACTTAGCAAGCCATAAAG  1050
       |||||||||||||||||||||||||||  ||||||||| ||||||||||
seq2  -GTGTCCTATTTTCTTTTCTTTGTAGAA-TGGACTTAGC-AGCCATAAAG  1044

seq1  CAAACCATAACAAAGTAGATCCTTAAAACTCTGCCTTCTGTGATGTCCAC  1100
      |||  ||||||||||||||||  | |||||||| |||||||||||| |||
seq2  CAA--CATAACAAAGTAGATC--TTAAACTCTG-CTTCTGTGATGT-CAC  1088

seq1  AGTGACCTGTTGCCCTTGGTGAT-GGAGAACTGTGTATCGTCTTCTG-TC  1148
      ||||| ||| || ||||| |||| ||||| ||||||||||||||||| ||
seq2  AGTGA-CTG-TGGCCTTGATGATGGGAGACCTGTGTATCGTCTTCTGTTC  1136

seq1  TTTGTTTGTGAATCACGTGCATCATGG-TCAGTGGA  1183
      |||||||| | |||| ||||||||||| ||||||||
seq2  TTTGTTTG-GTATCA-GTGCATCATGGTTCAGTGGA  1170


seq1: chr16_72711152_72712161
seq2: B6Ng01-240H13.g_130_1144 (reverse)

seq1  TTGA-CTTCTGTGTCCAT-GCAGCACACACA----CCACTGAGAAGTGAA  44
      |||| |||||| |||||| |||||||  |||    |||||||||||||||
seq2  TTGACCTTCTG-GTCCATGGCAGCACCAACACCACCCACTGAGAAGTGAA  49

seq1  GTGATACTGTG-TTCTCCAGTGGTAAATTAGGAGTGTATATAGTAAGTGG  93
      ||||||||||| |||||||||||||||||| |||||||||||||||||||
seq2  GTGATACTGTGTTTCTCCAGTGGTAAATTA-GAGTGTATATAGTAAGTGG  98

seq1  AGTTTATTGTAGGCTTGTTTCATTTTACTTTCGTCTTGGGCAGGCCCTGA  143
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGTTTATTGTAGGCTTGTTTCATTTTACTTTCGTCTTGAGCAGGCCCTGA  148

seq1  TCATGGAAGGCCATGCAGTGCTAAGTGAGATTTCTAGGCAATTAGCAATC  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGAAGGCCATGCAGTGCTAAGTGAGATTTCTAGGCAATTAGCAATC  198

seq1  TACTCAATATGTGATTCAAAAAATCATCATCAGCATAAGAAAACTAAAAT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAATATGTGATTCAAAAAATCATCATCAGCATAAGAAAACTAAAAT  248

seq1  TAGGTCTCCTTCCTGCTCATGTTCCTACATCATGGTCTTTTGCCCTATAC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCTCCTTCCTGCTCATGTTCCTACATCATGGTCTTTTGCCCTATAC  298

seq1  TCCTTCATTCATCCTTACTGTTAAAACTAGGTTTTTCCATATGTGAGTTT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCATTCATCCTTACTGTTAAAACTAGGTTTTTCCATATGTGAGTTT  348

seq1  CTATAATACTCCAGTTTTTACTAGCTATTTGTCTTGGTGAATACAGTTAG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATACTCCAGTTTTTACTAGCTATTTGTCTTGGTGAATACAGTTAG  398

seq1  AAATTAATTATTTTTTTTTGAGGGGGAGTCATATTTTATTGGTTACAGCA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAATTATTTTTTTTTGAGGGGGAGTCATATTTTATTGGTTACAGCA  448

seq1  ATACTCTTCTTGTATTTTAGGCAAAGTGTCCTGTATACCAGAATGGCAGT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTTCTTGTATTTTAGGCAAAGTGTCCTGTATACCAGAATGGCAGT  498

seq1  TAGTTTCTCAAATGTGGTGTGTTGGATAATTTTATGTCCACTTGACACAG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCTCAAATGTGGTGTGTTGGATAATTTTATGTCCACTTGACACAG  548

seq1  ATTAGAGTCATCTGCGAGGAGAGAAGCCCAGTTGAGGAAATGCATCCAGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAGTCATCTGCGAGGAGAGAAGCCCAGTTGAGGAAATGCATCCAGA  598

seq1  AGATTGGGCTGTCCAAAAGGGTGCTGGGCATTTTCTTAATTAGTGATTGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGGGCTGTCCAAAAGGGTGCTGGGCATTTTCTTAATTAGTGATTGA  648

seq1  TGTGTGAGGGCCCCACCCATTGTGGGTGGAGCCACTCCTGGGTTGGTTAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAGGGCCCCACCCATTGTGGGTGGAGCCACTCCTGGGTTGGTTAT  698

seq1  CTTAGGTTCTGTAAGAAAGTAGACTGAAAAAGCCTGTGAGCAGCATCTCT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGTTCTGTAAGAAAGTAGACTGAAAAAGCCTGTGAGCAGCATCTCT  748

seq1  CCATTTCCTCTGCACCAGCTCTTGCTTCAGATTCTTGTCCGAGTTCCTGA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCCTCTGCACCAGCTCTTGCTTCAGATTCTTGTCCGAGTTCCTGA  798

seq1  CCTAACTTTCTTCAGTGATTAACATTGATTTGGACCTGTAAGCCAAATAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACTTTCTTCAGTGATTAACATTGATTTGGACCTGTAAGCCAAATAG  848

seq1  CAGCGCCCCCCTCTCACCCCTTCCCGAAATTGCTATTGGCCTTGATGTTT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGCCCCCCTCTCACCCCTTCCCGAAATTGCTATTGGCCTTGATGTTT  898

seq1  CATTTTCTTTGTTCGAGACAGGGTTTCTCTGTATCGCCCTGACTGTCCTG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTTTGTTCGAGACAGGGTTTCTCTGTATCGCCCTGACTGTCCTG  948

seq1  GAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCC  998

seq1  TCTGCCTCCCAAGTGCT  1010
      |||||||||||||||||
seq2  TCTGCCTCCCAAGTGCT  1015


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